Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18] 14,731 sequences; 166,592,095 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq1553 241 1e-58 >seq1553 Length=5866729 Score = 241 bits (266), Expect = 1e-58 Identities = 329/460 (72%), Gaps = 6/460 (1%) Strand=Plus/Plus Query 20881 TCAGCCGCGGAAACGGACGCGGGGTCCTCCGCAGCTGAAGCAGCAGGGGATCAACGTGGT 20940 ||||| ||||| || ||||| || | | |||| || | ||| || || ||||||| Sbjct 1124581 TCAGCTTGGGAAAGGGTCGCGGTGTGCGCTGCAGTTGCTCCTTCAGCGGCTCTACGTGGT 1124640 Query 20941 TGTTGTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGA 21000 | ||| ||||| | || |||| |||||| |||||||| ||||| |||| ||||| | Sbjct 1124641 TCAGGTAGACGTGTGTATCGCCCATGGTGTGAACAAAGTCGCCCGGCTTCAGACCCGTCA 1124700 Query 21001 CGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGC 21060 | || || |||| | || || ||||||||| |||||||||||| || || || |||| Sbjct 1124701 CATGGGCAATCATGTGGGTGAGCAGGGCGTAGGAGGCGATGTTAAAGGGTACGCCCAGGC 1124760 Query 21061 CCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCG------AGCCACGT 21114 ||||||||||| ||||||||||||||||| |||||||| || || | |||| Sbjct 1124761 CCATGTCGGCGCTTCTCTGGTACAGCTGGCACGACAGCTCACCGCGCTTCTCGGAGACGT 1124820 Query 21115 AAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCC 21174 ||||||| ||| ||| || || || || |||||| | || |||| || |||| Sbjct 1124821 AAAACTGCGCCAAGCAGTGGCACGGCGGCAGGGCCATCTTTGGGATGTCCAGCGGATTCC 1124880 Query 21175 ACGCGCACATAACGATGCGCCGATCGTGGGGCCGCCTGTTAATTAGATCCACCACGTAAC 21234 | || |||| | |||||| || || |||| | | || || | ||| | | Sbjct 1124881 AAGCCGACATGATGATGCGTCGGTCTGAGGGCTTATTCCTGATGGTGTCGATCACTTGGC 1124940 Query 21235 GCAGCTGGTCCACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTACTCCGCCCCAA 21294 |||||||||| | |||| || |||||| ||||| | ||||| |||||| | Sbjct 1124941 GCAGCTGGTCGATGCCCTTGCCGCTGTAGTTATCGTCGCAGGTGCCGTACTGCGCCCCGA 1125000 Query 21295 AATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCGCC 21334 |||| ||||||||||| ||||||||||| ||||||||||| Sbjct 1125001 AATGCCTCCACTGGAAGCCGTACACCGGGCCCAGATCGCC 1125040 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427699199636880