Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18] 14,731 sequences; 166,592,095 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq1555 127 2e-24 seq1553 93.3 4e-14 seq1554 89.7 5e-13 >seq1555 Length=7220098 Score = 127 bits (140), Expect = 2e-24 Identities = 673/1061 (63%), Gaps = 34/1061 (3%) Strand=Plus/Plus Query 153345 GCCAGTTTCAAACTGGCATCGAGCGCGGCATGATACACAGTTTCGGAAATCTGTTTGTTC 153404 ||||||| | ||||| || | ||| ||| || | |||||| | ||||| | ||| Sbjct 5751092 GCCAGTTCGCAGCTGGCTTCCAAGGCGCCATAGTAAATGGTTTCGAATATCTGCTGATTC 5751151 Query 153405 AGTAAAACGGCAGCATCGCTCACGTACGGTATGCGCAACATGACAAATGCATCGGCCAAA 153464 | | | |||| | ||||| ||||||| | |||| | | || ||||| || || Sbjct 5751152 AAAAGACCGGCTTCTTCGCTTTCGTACGGGAAACGCATGAGAATCAAGGCATCAGCGAAT 5751211 Query 153465 CCTTGAATGCCAATGCCTATGGGACGATGGCGCATATTAGAtttttttGCAGCTTCAACA 153524 || ||||| |||||||| | |||||| || | || ||| || || |||| || | || Sbjct 5751212 CCCTGAATACCAATGCCCACGGGACGGTGCCTCAAATTGGACTTCCTTGC--CTCCGGCA 5751269 Query 153525 GG--ATAGAAATTGCGGTCGATAATTTTATTTAAACTAATCACGAC-ATGTT--TCACCA 153579 || ||| | ||| || || || || |||| | | | || || || | || Sbjct 5751270 GGGGATAATAGTTGATATCAATTATCTTGTTTAGATTTTTGGTAACTATCTTGGTGACTT 5751329 Query 153580 CAGAATGCAACAGTTGAAAATCAAACGT--TC-CATTAATGATATATTTGTTGACGGCAA 153636 | || | | ||||||| |||| || | ||| | |||||| ||| | Sbjct 5751330 CCTTGAGCTTC---TTAAAATCATACGTCTTCTCCGGCGTGACGAACATGTTGAGGGCGA 5751386 Query 153637 TCGACGCCAAGTTGCAAACGGCAGTTTCGTCGGGGGCGCAATATTGTACTATTTCCGCAC 153696 | || ||||||||||| || ||| | || || || | | |||||| || ||||||| | Sbjct 5751387 TGGAGGCCAAGTTGCAGACTGCAATCTCATCCGGTGAGGAATATTCAACGATTTCCGTGC 5751446 Query 153697 ACAAATTGCTGCATTTTATCAGGCCGCAATTACTTTGATTGCTTTTGCGGTTACAAGCGT 153756 |||| |||||||| || || ||| ||| || ||||| || | ||| ||||||| Sbjct 5751447 ACAAGTTGCTGCACTTGATGGTGCCCACATTCTGCTGGTTGCTCTTCCTGTTGCAAGCGT 5751506 Query 153757 CCTTGTATAGCATGTATGGTGTGCCGGTTTCGGCTTGAATTTCTATAATAGTACGCATCA 153816 ||||| | |||||||| || | ||||| || |||| || || || | | | || Sbjct 5751507 CCTTGAAGAGCATGTACGGATTTCCGGTCTCCACTTGCGCCTCAATGATGGCAAACCACA 5751566 Query 153817 ATG--TGA-CCGCGGGCATTTGATCGCGAAACTGGCCCTTGTCTTCGTAGTGTTTGTACC 153873 | ||| || | || | | | | | |||| | ||||| | | |||| Sbjct 5751567 GGGATTGAGCCTTAACCGTTCGGTTG---GCCCGACCCTCTTGCTCGTATTTCTCGTACA 5751623 Query 153874 AGTATTCAAACTCATCACCAAACGTATTGTTAAGCTCGGGACATTCGTTGGGACACATCA 153933 | ||| || ||||| || || | || || | ||||| | || ||| ||||| | Sbjct 5751624 GCTTTTCGAATTCATCGCCCCACACTTCGTGGAGACCAGGACACTTGTGGGGGCACATGA 5751683 Query 153934 GTGACCATCGGCCATTTTCTTGAACGCGACGCATAAATATATCGGGAACCCATAGGGCGT 153993 | ||||| || || | | |||||| ||| || | |||||| | ||| ||||||| Sbjct 5751684 GCGACCAATCACCGTTGGCCTCAACGCGTTTCATGAAGAGATCGGGTATCCACAGGGCGT 5751743 Query 153994 TCATCAGGTCGCGCGCTTTCGTGTCTTCGCTGCCAATGTTTCGACGCATGTGTAAGACGT 154053 | ||| ||||| || | ||||| |||| |||| || | | || | Sbjct 5751744 AAAACAGATCGCGTGCGCGATTCTCTTCTTTGCCCGTGTTCTTCTTCAGTTCCAGGAACT 5751803 Query 154054 CCATTATGTCGCAATGCCACGGTTCCACGTAAACTGCTTGAGCGCCTTTACGCTTGCCG- 154112 | | | || | ||||| ||||||| |||| || || || |||||||||| Sbjct 5751804 CAAAGACATCCGAGTGCCAGGGTTCCAAATAAATGGCAAAGGCACCGGGACGCTTGCCGC 5751863 Query 154113 --CCCTGATTTACGTGACGCACCATATTGTTGAAAACCCGAAGCATGGGTAGCAGACCGC 154170 ||||||| || | ||| ||| ||| ||||| |||| |||||||| | || || Sbjct 5751864 CTCCCTGATCCACATAACGTGCCACATTATTGAAGACCCTCAGCATGGGAACCAACCCAT 5751923 Query 154171 TGGCGGTACCGTTTGTAGATTTAATCTTGCTG----TTGCGGCCTCGAACGCTGTTTACG 154226 ||| ||||| ||||| |||| | || ||| | |||| || | ||| Sbjct 5751924 TGGAAGTACCATTTGTGCCGCAAATCGAGGTGCCCTTTG----CACGAATGCAATGCACG 5751979 Query 154227 TTTAATCCAATACCGCCGCCGTGTTTGGAGATCATGGCGCAATCGTTCAATGTGTTATAG 154286 || | ||| || || ||| || ||||||||||||||||| | | || | || | Sbjct 5751980 TTGAGTCCGATGCCACCGGCGGACTTGGAGATCATGGCGCATTGTTCCACAGACTTGAAA 5752039 Query 154287 ATACCACGAATGCTATCGCTTTCCATGGTCAATAGGAAACATGAACTCATCTGCGG--AG 154344 || || ||| ||| | |||||||| |||||||| || || |||||| | Sbjct 5752040 ATGCCCTCGATGGAGTCGGCTGTCATGGTCAGAAGGAAACACGACGACAACTGCGGCCGG 5752099 Query 154345 TTGGAGTGCCGGCAGCAAACATGGTCGGGCTTGCGTGCGTG 154385 || ||| | || ||||||| || || ||| |||||| Sbjct 5752100 TT--TGTGGCAGCGGCAAACAGTGTGGGCGATGCATGCGTG 5752138 Score = 102 bits (112), Expect = 8e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || ||||| | || ||||| || ||||||||||| || | |||| ||||| Sbjct 5837926 ACCAAGTGCAGAGTGGACTCCTTCTGAATGTTATAGTCAGAGAGGGTGCGGCCATCTTCC 5837867 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 ||||| || ||||| |||||||||| |||||||| ||||| || ||||||||||| || Sbjct 5837866 AGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTGTC-CTG 5837808 Query 139676 ATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734 | | || | ||| | | ||| | || || | || || ||||||| || | ||||| Sbjct 5837807 AATCTTGGCTTTGACATTTTCGATAGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTT 5837748 Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| || | || || ||||| || ||||| Sbjct 5837747 GCCCGTGAGGGTCTTAACGAAGATCTGCAT 5837718 >seq1553 Length=5866729 Score = 93.3 bits (102), Expect = 4e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || ||||| | || ||||| || || ||||| || ||| | |||| || || Sbjct 2325467 ACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCCTCC 2325408 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 ||||| || || || |||||||||| |||||||| || || ||||| || || || | Sbjct 2325407 AGCTGCTTGCCCGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTATCCTGG 2325348 Query 139676 ATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTG 139735 || || || | | || | ||||| | ||||||||||| | ||| | |||||| Sbjct 2325347 ATCTTAGCCTTGACATTCTCGATGGTGTCAGAAGGCTCCACCTCCAAGGTGATGGTCTTG 2325288 Query 139736 CCGGTCAACGTTTTTACGAATATTTGCATAG 139766 ||||| | ||||| ||||| || ||||||| Sbjct 2325287 CCGGTGAGGGTTTTCACGAAGATCTGCATAG 2325257 >seq1554 Length=6179234 Score = 89.7 bits (98), Expect = 5e-13 Identities = 150/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 139549 ACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGA 139608 ||||| || || |||| || ||||| || || ||||| || ||| || |||| Sbjct 592534 ACGCAGGACCAAATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCC 592475 Query 139609 GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 139668 ||| || | ||| || || || |||||| ||| |||||||| || || || || || || Sbjct 592474 GTCCTCCAACTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTT 592415 Query 139669 GTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 ||| ||| || || | | || | || |||| ||||| ||||| | || | Sbjct 592414 GTCCTGGATCTTGGCCTTGACGTTCTCGATGGTATCGGATGGCTCAACCTCCAAAGTGAT 592355 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||||||||||||| || || ||||| ||||||||| Sbjct 592354 GGTCTTGCCGGTCAGAGTCTTAACGAAAATTTGCATA 592318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495972656015200