Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18]
14,731 sequences; 166,592,095 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq1555 127 2e-24
seq1553 93.3 4e-14
seq1554 89.7 5e-13
>seq1555
Length=7220098
Score = 127 bits (140), Expect = 2e-24
Identities = 673/1061 (63%), Gaps = 34/1061 (3%)
Strand=Plus/Plus
Query 153345 GCCAGTTTCAAACTGGCATCGAGCGCGGCATGATACACAGTTTCGGAAATCTGTTTGTTC 153404
||||||| | ||||| || | ||| ||| || | |||||| | ||||| | |||
Sbjct 5751092 GCCAGTTCGCAGCTGGCTTCCAAGGCGCCATAGTAAATGGTTTCGAATATCTGCTGATTC 5751151
Query 153405 AGTAAAACGGCAGCATCGCTCACGTACGGTATGCGCAACATGACAAATGCATCGGCCAAA 153464
| | | |||| | ||||| ||||||| | |||| | | || ||||| || ||
Sbjct 5751152 AAAAGACCGGCTTCTTCGCTTTCGTACGGGAAACGCATGAGAATCAAGGCATCAGCGAAT 5751211
Query 153465 CCTTGAATGCCAATGCCTATGGGACGATGGCGCATATTAGAtttttttGCAGCTTCAACA 153524
|| ||||| |||||||| | |||||| || | || ||| || || |||| || | ||
Sbjct 5751212 CCCTGAATACCAATGCCCACGGGACGGTGCCTCAAATTGGACTTCCTTGC--CTCCGGCA 5751269
Query 153525 GG--ATAGAAATTGCGGTCGATAATTTTATTTAAACTAATCACGAC-ATGTT--TCACCA 153579
|| ||| | ||| || || || || |||| | | | || || || | ||
Sbjct 5751270 GGGGATAATAGTTGATATCAATTATCTTGTTTAGATTTTTGGTAACTATCTTGGTGACTT 5751329
Query 153580 CAGAATGCAACAGTTGAAAATCAAACGT--TC-CATTAATGATATATTTGTTGACGGCAA 153636
| || | | ||||||| |||| || | ||| | |||||| ||| |
Sbjct 5751330 CCTTGAGCTTC---TTAAAATCATACGTCTTCTCCGGCGTGACGAACATGTTGAGGGCGA 5751386
Query 153637 TCGACGCCAAGTTGCAAACGGCAGTTTCGTCGGGGGCGCAATATTGTACTATTTCCGCAC 153696
| || ||||||||||| || ||| | || || || | | |||||| || ||||||| |
Sbjct 5751387 TGGAGGCCAAGTTGCAGACTGCAATCTCATCCGGTGAGGAATATTCAACGATTTCCGTGC 5751446
Query 153697 ACAAATTGCTGCATTTTATCAGGCCGCAATTACTTTGATTGCTTTTGCGGTTACAAGCGT 153756
|||| |||||||| || || ||| ||| || ||||| || | ||| |||||||
Sbjct 5751447 ACAAGTTGCTGCACTTGATGGTGCCCACATTCTGCTGGTTGCTCTTCCTGTTGCAAGCGT 5751506
Query 153757 CCTTGTATAGCATGTATGGTGTGCCGGTTTCGGCTTGAATTTCTATAATAGTACGCATCA 153816
||||| | |||||||| || | ||||| || |||| || || || | | | ||
Sbjct 5751507 CCTTGAAGAGCATGTACGGATTTCCGGTCTCCACTTGCGCCTCAATGATGGCAAACCACA 5751566
Query 153817 ATG--TGA-CCGCGGGCATTTGATCGCGAAACTGGCCCTTGTCTTCGTAGTGTTTGTACC 153873
| ||| || | || | | | | | |||| | ||||| | | ||||
Sbjct 5751567 GGGATTGAGCCTTAACCGTTCGGTTG---GCCCGACCCTCTTGCTCGTATTTCTCGTACA 5751623
Query 153874 AGTATTCAAACTCATCACCAAACGTATTGTTAAGCTCGGGACATTCGTTGGGACACATCA 153933
| ||| || ||||| || || | || || | ||||| | || ||| ||||| |
Sbjct 5751624 GCTTTTCGAATTCATCGCCCCACACTTCGTGGAGACCAGGACACTTGTGGGGGCACATGA 5751683
Query 153934 GTGACCATCGGCCATTTTCTTGAACGCGACGCATAAATATATCGGGAACCCATAGGGCGT 153993
| ||||| || || | | |||||| ||| || | |||||| | ||| |||||||
Sbjct 5751684 GCGACCAATCACCGTTGGCCTCAACGCGTTTCATGAAGAGATCGGGTATCCACAGGGCGT 5751743
Query 153994 TCATCAGGTCGCGCGCTTTCGTGTCTTCGCTGCCAATGTTTCGACGCATGTGTAAGACGT 154053
| ||| ||||| || | ||||| |||| |||| || | | || |
Sbjct 5751744 AAAACAGATCGCGTGCGCGATTCTCTTCTTTGCCCGTGTTCTTCTTCAGTTCCAGGAACT 5751803
Query 154054 CCATTATGTCGCAATGCCACGGTTCCACGTAAACTGCTTGAGCGCCTTTACGCTTGCCG- 154112
| | | || | ||||| ||||||| |||| || || || ||||||||||
Sbjct 5751804 CAAAGACATCCGAGTGCCAGGGTTCCAAATAAATGGCAAAGGCACCGGGACGCTTGCCGC 5751863
Query 154113 --CCCTGATTTACGTGACGCACCATATTGTTGAAAACCCGAAGCATGGGTAGCAGACCGC 154170
||||||| || | ||| ||| ||| ||||| |||| |||||||| | || ||
Sbjct 5751864 CTCCCTGATCCACATAACGTGCCACATTATTGAAGACCCTCAGCATGGGAACCAACCCAT 5751923
Query 154171 TGGCGGTACCGTTTGTAGATTTAATCTTGCTG----TTGCGGCCTCGAACGCTGTTTACG 154226
||| ||||| ||||| |||| | || ||| | |||| || | |||
Sbjct 5751924 TGGAAGTACCATTTGTGCCGCAAATCGAGGTGCCCTTTG----CACGAATGCAATGCACG 5751979
Query 154227 TTTAATCCAATACCGCCGCCGTGTTTGGAGATCATGGCGCAATCGTTCAATGTGTTATAG 154286
|| | ||| || || ||| || ||||||||||||||||| | | || | || |
Sbjct 5751980 TTGAGTCCGATGCCACCGGCGGACTTGGAGATCATGGCGCATTGTTCCACAGACTTGAAA 5752039
Query 154287 ATACCACGAATGCTATCGCTTTCCATGGTCAATAGGAAACATGAACTCATCTGCGG--AG 154344
|| || ||| ||| | |||||||| |||||||| || || |||||| |
Sbjct 5752040 ATGCCCTCGATGGAGTCGGCTGTCATGGTCAGAAGGAAACACGACGACAACTGCGGCCGG 5752099
Query 154345 TTGGAGTGCCGGCAGCAAACATGGTCGGGCTTGCGTGCGTG 154385
|| ||| | || ||||||| || || ||| ||||||
Sbjct 5752100 TT--TGTGGCAGCGGCAAACAGTGTGGGCGATGCATGCGTG 5752138
Score = 102 bits (112), Expect = 8e-17
Identities = 150/210 (71%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615
|| ||||| | || ||||| || ||||||||||| || | |||| |||||
Sbjct 5837926 ACCAAGTGCAGAGTGGACTCCTTCTGAATGTTATAGTCAGAGAGGGTGCGGCCATCTTCC 5837867
Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675
||||| || ||||| |||||||||| |||||||| ||||| || ||||||||||| ||
Sbjct 5837866 AGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTGTC-CTG 5837808
Query 139676 ATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734
| | || | ||| | | ||| | || || | || || ||||||| || | |||||
Sbjct 5837807 AATCTTGGCTTTGACATTTTCGATAGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTT 5837748
Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCAT 139764
||| || | || || ||||| || |||||
Sbjct 5837747 GCCCGTGAGGGTCTTAACGAAGATCTGCAT 5837718
>seq1553
Length=5866729
Score = 93.3 bits (102), Expect = 4e-14
Identities = 147/211 (70%), Gaps = 0/211 (0%)
Strand=Plus/Minus
Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615
|| ||||| | || ||||| || || ||||| || ||| | |||| || ||
Sbjct 2325467 ACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCCTCC 2325408
Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675
||||| || || || |||||||||| |||||||| || || ||||| || || || |
Sbjct 2325407 AGCTGCTTGCCCGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTATCCTGG 2325348
Query 139676 ATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTG 139735
|| || || | | || | ||||| | ||||||||||| | ||| | ||||||
Sbjct 2325347 ATCTTAGCCTTGACATTCTCGATGGTGTCAGAAGGCTCCACCTCCAAGGTGATGGTCTTG 2325288
Query 139736 CCGGTCAACGTTTTTACGAATATTTGCATAG 139766
||||| | ||||| ||||| || |||||||
Sbjct 2325287 CCGGTGAGGGTTTTCACGAAGATCTGCATAG 2325257
>seq1554
Length=6179234
Score = 89.7 bits (98), Expect = 5e-13
Identities = 150/217 (69%), Gaps = 0/217 (0%)
Strand=Plus/Minus
Query 139549 ACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGA 139608
||||| || || |||| || ||||| || || ||||| || ||| || ||||
Sbjct 592534 ACGCAGGACCAAATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCC 592475
Query 139609 GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 139668
||| || | ||| || || || |||||| ||| |||||||| || || || || || ||
Sbjct 592474 GTCCTCCAACTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTT 592415
Query 139669 GTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728
||| ||| || || | | || | || |||| ||||| ||||| | || |
Sbjct 592414 GTCCTGGATCTTGGCCTTGACGTTCTCGATGGTATCGGATGGCTCAACCTCCAAAGTGAT 592355
Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765
||||||||||||| || || ||||| |||||||||
Sbjct 592354 GGTCTTGCCGGTCAGAGTCTTAACGAAAATTTGCATA 592318
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 495972656015200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |