Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18] 14,731 sequences; 166,592,095 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq1555 340 3e-88 seq1557 178 2e-39 >seq1555 Length=7220098 Score = 340 bits (376), Expect = 3e-88 Identities = 1217/1886 (65%), Gaps = 34/1886 (2%) Strand=Plus/Plus Query 78708 CTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCC 78767 ||||| || ||||| ||||||| | | || || || || || |||||||||||||| Sbjct 5750470 CTTGTTCACGGTGAACTGAATGGCATTCGCAGCTGGCTTGGTGCGCAGATAGTACATTCC 5750529 Query 78768 CGTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGG 78827 ||||| ||||| |||| ||| || || || || || || ||| | || Sbjct 5750530 GGTTTTAAGACCTGCTTTCCAGGAGTAAAAGTGTATGGAAGTCAGCTTTCCATAGTTTGG 5750589 Query 78828 ATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGC 78887 || || | ||| || || | || ||||| ||||| ||||| || || | || || || Sbjct 5750590 CTCGGCCACATGTATGTTGAACGACTGACTCTGATCTATGAACGCACCACGATCGGCGGC 5750649 Query 78888 CATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAA---CTCGCTTAAT 78944 |||||| || | | ||| || |||||||| | || ||||| | ||||| Sbjct 5750650 CATTTTAATCGTGGACTTGACTGAGATTTCCCACACCGTCTTATACAGATCTCGC----- 5750704 Query 78945 ATCTTCTGG---AAGGTTTGTAT--TCTGAATGGATCCACCATCTGCC-ATAATCCTATT 78998 | ||||||| | ||| | || | ||||| ||||| || ||| || ||| || Sbjct 5750705 ACCTTCTGGGGGATGGTCTCAATGTTTTGAATCGATCC-CCTGCTGGATATGATCTGGTT 5750763 Query 78999 CTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAAC 79058 ||| || || || | ||| || | |||||||| | | | | ||| | || || Sbjct 5750764 CTTCATGTCGTCGTCCCACAAGTCCAGCTCGGTTAGGTCGCGCAACAAATGATGGTTGAC 5750823 Query 79059 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCAC 79118 || || ||||| || |||| |||| ||| ||||| || || |||| || || || | Sbjct 5750824 CACCTGGAATTCGCCGGACAGAACTCGCCGGGTGTATATGTTCGTGGTGTAGGGCTCGAA 5750883 Query 79119 CGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAA 79178 |||||||| || |||| || ||||| || ||||| || ||||| || || || | | Sbjct 5750884 GGATTCATTGTTGCCCATTATCTGAGCCGTAGATGCAGTGGGCATGGGAGCAACGAGCAG 5750943 Query 79179 ACTATTTCTAAGACCGTATGATCTGATTTTA-TCTTTTAGAGATTCCCAATCCCAAAGAT 79237 || | | ||||| ||| | | | || || | | ||| ||||| || | Sbjct 5750944 GGAGTTCCGGACACCGTGCT-TCTTAATGGACTCCTTCAATTTCTGCCAGTCCCACAGGT 5751002 Query 79238 CAGACGGGACAACATTCCAAAGATCATATTGTAGAATACCGTTACT-AGCGTATGATCCT 79296 | || || | ||| | || || || | ||| || || || | || ||| Sbjct 5751003 TCGTTGGCACCTTGTCCCACATGTCGTACTGCAAAATTCCTTTGCTCACCGGGCTGCCCT 5751062 Query 79297 GTGTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCG 79356 ||| ||||| || | ||||| | | ||| | ||| || || || || || || || Sbjct 5751063 C-GTAGGTTTCGTATGCACCTTCGGTCTGGGCCAGTTCGCAGCTGGCTTCCAAGGCGCCA 5751121 Query 79357 TAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGA 79416 || |||||||||||||| |||| || ||| | | |||||| ||| || | || Sbjct 5751122 TAGTAAATGGTTTCGAATATCTGCTGATTCAAAAGACCGGCTTCTTCGCTTTCGTACGGG 5751181 Query 79417 TAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGT 79476 || | |||||| || || || || ||||| |||| |||||| || | || | || Sbjct 5751182 AAACGCATGAGAATCAAGGCATCAGCGAATCCCTGAATACCAATGCCCACGGGACGGTGC 5751241 Query 79477 CTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTG 79536 ||| ||| || | || || || | |||||||| || ||||| || || || || Sbjct 5751242 CTCAAATTGGACTTCCTTGCCTCCGGCAGGGGATAATAGTTGATATCAATTATCTTGTTT 5751301 Query 79537 AGATTCCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCGTCCATCT 79596 ||||| || | || ||| || ||||| || || ||||||| | |||| ||| Sbjct 5751302 AGATTTTTGGTAACTATCTTGGTGACTTCCTTGAGCTTCTTAAAATCATA-CGTCT-TCT 5751359 Query 79597 A-----TTACAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAG 79651 | || |||||||| | |||| || |||| || || || || | ||||| | Sbjct 5751360 CCGGCGTGACGAACATGTTGAGGGCGATGGAGGCCAAGTTGCAGACTGCAATCTCATCCG 5751419 Query 79652 CATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTT 79711 | ||||| | ||||| ||||| | ||| || ||||| ||||| || | ||| | Sbjct 5751420 GTGAGGAATATTCAACGATTTCCGTGCACAAGTTGCTGCACTTGATGGTGCCCACATTCT 5751479 Query 79712 GTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAA 79771 | || || ||||| |||| || || ||||| | || ||| ||||| | || || || | Sbjct 5751480 GCTGGTTGCTCTTCCTGTTGCAAGCGTCCTTGAAGAGCATGTACGGATTTCCGGTCTCCA 5751539 Query 79772 TCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGACTTGTATCTCT 79831 || | || || || || ||| | | | ||||||| | | ||| | | Sbjct 5751540 CTTGCGCCTCAATGATGGCAAACCACAGGGATTGAGCCTTAACCGTTCGGTTGG--CCCG 5751597 Query 79832 TTTCTCTT--TCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAA 79889 ||||| ||||||| || | |||||| || || ||||| || |||| | Sbjct 5751598 ACCCTCTTGCTCGTATTTCTCGTACAGCTTTTCGAATTCATCGCCCCACACTTCGTGGAG 5751657 Query 79890 TCCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCAT 79949 |||||||| | || || ||||| | |||||| || || | ||| || |||||||| Sbjct 5751658 ACCAGGACACTTGTGGGGGCACATGAGCGACCAATCACCGTTGGCCTCAACGCGTTTCAT 5751717 Query 79950 AAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCC 80009 |||||||| || ||||| || || ||| ||||| | | | || ||| || || || Sbjct 5751718 GAAGAGATCGGGTATCCACAGGGCGTAAAACAGATCGCGTGCGCGATTCTCTTCTTTGCC 5751777 Query 80010 TGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATAT 80069 || ||||| || || || |||||| | | | ||| || ||||| |||||||| || || Sbjct 5751778 CGTGTTCTTCTTCAGTTCCAGGAACTCAAAGACATCCGAGTGCCAGGGTTCCAAATAAAT 5751837 Query 80070 GGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATA 80129 ||| | | || || || ||| ||||||||||| | || | || ||||| | Sbjct 5751838 GGCAAAGGCACCGGGACGCTTGCCGCCTCCCTGATCCACATAACGTGCCACATTATTGAA 5751897 Query 80130 AACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCC 80189 || |||| ||| |||| | |||||||| |||||||| || ||| | || || | || Sbjct 5751898 GACCCTCAGCATGGGAACCAACCCATTGGAAGTACCATTTGTGCCGCAAATCGAGGTGCC 5751957 Query 80190 ACTGGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAAT 80247 | |||||||| | | | ||| || || || || || || || ||||| | Sbjct 5751958 CTTTGCACGAATGCAATGCACGTTG--AGTCCGATGCCACCGGCGGACTTGGAGATCATG 5752015 Query 80248 GCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGA 80307 |||||| ||| | | | | |||||||| ||| || | ||||| | || || Sbjct 5752016 GCGCATTGTTCCACAGACTTGAAAATGCCCTCGATGGAGTCGGCTGTCATGGTCAGAAGG 5752075 Query 80308 AAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGC 80367 ||||| |||| || | || | || | || ||| | || || || || ||| Sbjct 5752076 AAACACGACGACAACTGCGGCCGGTTTGTGGCAGCGGCAAACAGTGTGGGCGATGCATGC 5752135 Query 80368 GTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGA 80427 || || | || ||||| ||||| || || || | || | || |||||| | | Sbjct 5752136 GTGAAGTAGCGCTCCGACAGAAGATTATAGGTTTCCACGGCCGCATCGATATCCTCTCCA 5752195 Query 80428 TGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTT 80487 || ||||| | ||| || ||||| | ||| ||||| |||| || ||||||| ||| Sbjct 5752196 TGGATTCCGATCGCAACGCGCATCAGCATATGCTGCGGTCGCTCTGCGATCTTTCCGTTT 5752255 Query 80488 ATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCT 80547 | || | | || || |||| || || || ||||||||||| || |||||| Sbjct 5752256 CTCTTGAGAAGATAGGAACGCTCCAGCGTCTTGAAGCCAAAATAGTTATAGCCAAAGTCA 5752315 Query 80548 CGTTCGTAAATAATAACCGAGTTGAG 80573 || || || || || |||||| || Sbjct 5752316 CGATCATAGATTATGGACGAGTTCAG 5752341 >seq1557 Length=14215200 Score = 178 bits (196), Expect = 2e-39 Identities = 548/841 (65%), Gaps = 15/841 (2%) Strand=Plus/Plus Query 49660 ACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAAT 49719 |||||||| ||||| || |||| || |||||||| || || ||||| |||| Sbjct 5421653 ACTCCCATGCGCTGGTACTCCGCCACCTTCTTCTCGAAAAAGTTGGTCTTTCCGTCCAGC 5421712 Query 49720 GATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAAT 49779 ||||| | |||||||| | ||| || || | || || || ||| || ||||| Sbjct 5421713 GATATCATCTCCATGAAGTTAAATGGGTTTTTGGTGTTGTAGATCTTTCCAACGCCCAAC 5421772 Query 49780 TCAGAAATCAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATT 49839 || | ||| | ||||| || || || || || ||||| || |||||||| Sbjct 5421773 TCCACGAGCAAACGGTCCGCTACGAACTCAATGTACTGGGACATCAGGTCGCAATTCATG 5421832 Query 49840 CCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCT 49899 || || | || || || || || | || || || || || || |||| ||||| || Sbjct 5421833 CCGATCAAATTGACGGGCAGGGCATCGGTGAGGAACTCCTGCTCTATGGCCACCGCGTCG 5421892 Query 49900 GTTATAATAGATCTAACGGTTTCT-TCACTC---GGTGGATGCAATAAATGTTTAAACAT 49955 || ||||| | | | || | | ||| | |||| | || | ||||| Sbjct 5421893 CGGAT----GATCTCGATGATGCGCTCGCGCTTGGGTCGCTGCACCAGGTGCTGGAACAT 5421948 Query 49956 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGT 50015 || || || |||||||||| |||||||| | | || || |||||||| || || Sbjct 5421949 CAGCACGGCAAAGTCGCAGTGCAAGCCCTCGTCGCGAGAGATCAGCTCGTTGGAGAAGGT 5422008 Query 50016 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAA--TGACCCAGAA 50073 | ||| ||||| || || ||||| |||||||| || ||||| || || || | | ||| Sbjct 5422009 CAATCCAGGCATCAGACCGCGCTTCTTAAGCCAGAAAATGGAGGCGAAGCTGCCGCTGAA 5422068 Query 50074 AAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGC--GCTGT 50131 ||| || || || || ||||||||||| | | | ||| || || |||| || Sbjct 5422069 --GAAAATGCCCTCCACGGCGGCAAAGGCGATGATGCGCTCCCCGAAATTGGCCGACTTG 5422126 Query 50132 CATG-TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATG 50190 ||| ||||| | ||||| || ||||| || ||| ||||||||||| || Sbjct 5422127 GATGAGATCCAGGACAGGGCCCAGTCTGCCTTGCGCTTCACAGCCGGCATCGTTTCGATA 5422186 Query 50191 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTA 50250 || || || || || | | | | ||| | ||||| |||||||||| ||| Sbjct 5422187 GCGTTGAACAGGTACTCTCGCTGGTGTGGATCCCGGATGTAAGTGTCGATCAAAACACTG 5422246 Query 50251 TACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCG 50310 ||||| ||||| || | ||| || ||||| ||||| || |||||||| |||| ||||| Sbjct 5422247 TACATCTCCGAGTGCACGTTCTCCATGGCGATCTGGAAGCCGTAGAAGCATCGTGCCTCC 5422306 Query 50311 GTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTG 50370 || |||||||| || || || || || | | || || || || || || ||| | Sbjct 5422307 GTGATCTGCACCTCCTGACTGAAGCGCTCCACCAGGTTCTCGTTTACGATGCCATCAGAG 5422366 Query 50371 GCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTC 50430 || || || || |||| || || || ||||| |||| | | || | | Sbjct 5422367 GCGGCGAAGAAGGCCAGCACGTGCGAGATGAAATGGCGCTCGTCGTCCTTCAGGCGGTGC 5422426 Query 50431 CAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 50490 || ||| | | || || || | ||| || || || || ||||| || || ||||| ||| Sbjct 5422427 CAGTCAGTAAGGTCCTTGGACAAATCCACCTCCTCGACGGTCCAGAAAGAAGCCTCAGCC 5422486 Query 50491 T 50491 | Sbjct 5422487 T 5422487 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718136539778840