Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18] 14,731 sequences; 166,592,095 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq1554 87.8 1e-12 seq1556 82.4 6e-11 >seq1554 Length=6179234 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||| ||| |||| | | |||||||| | || |||||| || | ||||| ||||| Sbjct 592546 GCCACCAAGCAGACGCAGGACCAAATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGA 592487 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 || || ||| |||| ||||| || || ||||| || ||||| ||||| ||||| | || Sbjct 592486 CAGAGTGCGTCCGTCCTCCAACTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGG 592427 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | || || || || |||| | ||||| | | | || ||| | ||| || Sbjct 592426 GATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTATCGGATGGCTCAAC 592367 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 || | || || || || ||||| ||||| || || ||||||||||| || Sbjct 592366 CTCCAAAGTGATGGTCTTGCCGGTCAGAGTCTTAACGAAAATTTGCATATT 592316 >seq1556 Length=7591821 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || |||||||| | | |||||||||| || |||||| || | |||||||||||| Sbjct 3893205 CCACCACGCAGACGGAGAACCAAATGGAGGGTTGACTCCTTCTGGATGTTGTAATCGGAC 3893264 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATC 42995 | || ||| |||| |||||||| ||||| || || |||| ||||| ||||| Sbjct 3893265 AGGGTGCGTCCGTCTTCCAATTGCTTGCCAGCGAAGATCAGACGCTGCTGATC 3893317 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || |||||||| | | |||||||||| || |||||| || | |||||||||||| Sbjct 3893889 CCACCACGCAGACGGAGAACCAAATGGAGGGTTGACTCCTTCTGGATGTTGTAATCGGAC 3893948 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATC 42995 | || ||| |||| |||||||| ||||| || || |||| ||||| ||||| Sbjct 3893949 AGGGTGCGTCCGTCTTCCAATTGCTTGCCAGCGAAGATCAGACGCTGCTGATC 3894001 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381301131166398