Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18]
14,731 sequences; 166,592,095 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq1555 298 7e-76
>seq1555
Length=7220098
Score = 298 bits (330), Expect = 7e-76
Identities = 1194/1872 (64%), Gaps = 30/1872 (2%)
Strand=Plus/Plus
Query 70791 CTTGTCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATGCC 70850
||||| || || |||||||||| | | || | || || || ||||||||||| ||
Sbjct 5750470 CTTGTTCACGGTGAACTGAATGGCATTCGCAGCTGGCTTGGTGCGCAGATAGTACATTCC 5750529
Query 70851 TGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGG 70910
||||| ||||| |||| |||||| || || || || || |||| | ||
Sbjct 5750530 GGTTTTAAGACCTGCTTTCCAGGAGTAAAAGTGTATGGAAGTCAGCTTTCCATAGTTTGG 5750589
Query 70911 ATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGC 70970
||||| | || || || | ||||||||| ||||| ||||| || || | || || ||
Sbjct 5750590 CTCGGCCACATGTATGTTGAACGACTGACTCTGATCTATGAACGCACCACGATCGGCGGC 5750649
Query 70971 CATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAA---CTCGCTTAAT 71027
|||||| || | | ||| || |||||||| | || ||||| | |||||
Sbjct 5750650 CATTTTAATCGTGGACTTGACTGAGATTTCCCACACCGTCTTATACAGATCTCGC----- 5750704
Query 71028 ATCTTCTGG---AAGGTTTGTAT--TCTGAATGGATCCACCATCTGCA-ATAATCCTATT 71081
| ||||||| | ||| | || | ||||| ||||| || ||| | || ||| ||
Sbjct 5750705 ACCTTCTGGGGGATGGTCTCAATGTTTTGAATCGATCC-CCTGCTGGATATGATCTGGTT 5750763
Query 71082 TTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAAC 71141
|| || || || | ||| || | |||||||| | | | | |||| | || ||
Sbjct 5750764 CTTCATGTCGTCGTCCCACAAGTCCAGCTCGGTTAGGTCGCGCAACAAATGATGGTTGAC 5750823
Query 71142 TACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCAC 71201
|| || ||||| || |||| |||| || ||||| || || |||| || || || |
Sbjct 5750824 CACCTGGAATTCGCCGGACAGAACTCGCCGGGTGTATATGTTCGTGGTGTAGGGCTCGAA 5750883
Query 71202 TGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAG 71261
|| ||||| || |||| || ||||| || |||||||| ||||| || || || | ||
Sbjct 5750884 GGATTCATTGTTGCCCATTATCTGAGCCGTAGATGCAGTGGGCATGGGAGCAACGAGCAG 5750943
Query 71262 ACTATTTCTAAGACCATGTGATCGGATTTTA-TCTTTTAGAGATTCCCAATTCCAAAGAT 71320
|| | | ||| || || | | | || || | | ||| | ||| || |
Sbjct 5750944 GGAGTTCCGGACACCGTGCT-TCTTAATGGACTCCTTCAATTTCTGCCAGTCCCACAGGT 5751002
Query 71321 CCGATGGTACAACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACT-AGCGTATGATCCT 71379
|| ||| || || || || || | || |||
Sbjct 5751003 TCGTTGGCACCTTGTCCCACATGTCGTACTGCAAAATTCCTTTGCTCACCGGGCTGCCCT 5751062
Query 71380 GCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCA 71439
| || || ||||||| ||||| | | ||| ||||| || || || || || || |||
Sbjct 5751063 -CGTAGGTTTCGTATGCACCTTCGGTCTGGGCCAGTTCGCAGCTGGCTTCCAAGGCGCCA 5751121
Query 71440 TAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGA 71499
|| |||||||||||||| |||| || ||| | | ||||| ||| || | ||
Sbjct 5751122 TAGTAAATGGTTTCGAATATCTGCTGATTCAAAAGACCGGCTTCTTCGCTTTCGTACGGG 5751181
Query 71500 TAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGT 71559
|| | |||||| || || || || ||||| |||| ||||| || | || | |||
Sbjct 5751182 AAACGCATGAGAATCAAGGCATCAGCGAATCCCTGAATACCAATGCCCACGGGACGGTGC 5751241
Query 71560 CTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTG 71619
||| ||| || | || || || | |||||||| || ||||| || || || ||
Sbjct 5751242 CTCAAATTGGACTTCCTTGCCTCCGGCAGGGGATAATAGTTGATATCAATTATCTTGTTT 5751301
Query 71620 AGATTTCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCTCCCATCT 71679
|||||| || | || ||| || ||||| || || ||||||| | || ||
Sbjct 5751302 AGATTTTTGGTAACTATCTTGGTGACTTCCTTGAGCTTCTTAAAATCATACGTCTTCTCC 5751361
Query 71680 A---TTACAAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCA 71736
| || |||| ||| | ||| | || |||| || || || || | ||||| |
Sbjct 5751362 GGCGTGACGAACATGTTGAGGGCGATGGAGGCCAAGTTGCAGACTGCAATCTCATCCGGT 5751421
Query 71737 TCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGT 71796
|| ||||| | ||||| ||||| | || || ||||||||||| || | ||| ||
Sbjct 5751422 GAGGAATATTCAACGATTTCCGTGCACAAGTTGCTGCACTTGATGGTGCCCACATTCTGC 5751481
Query 71797 TGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATC 71856
|| || ||||| |||| || || ||||| | || || ||||| | || || || |
Sbjct 5751482 TGGTTGCTCTTCCTGTTGCAAGCGTCCTTGAAGAGCATGTACGGATTTCCGGTCTCCACT 5751541
Query 71857 TGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATATTCTTGTATCTCTTT 71916
|| | || || || || ||| | | | ||||||| | | ||| | |
Sbjct 5751542 TGCGCCTCAATGATGGCAAACCACAGGGATTGAGCCTTAACCGTTCGGTTGG--CCCGAC 5751599
Query 71917 TCTCTT--TCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATC 71974
||||| ||||||| || | |||||| || || ||||| | | || | |
Sbjct 5751600 CCTCTTGCTCGTATTTCTCGTACAGCTTTTCGAATTCATCGCCCCACACTTCGTGGAGAC 5751659
Query 71975 CAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAA 72034
||||||| | | || ||||| | ||||| || || | | | || |||||||| |
Sbjct 5751660 CAGGACACTTGTGGGGGCACATGAGCGACCAATCACCGTTGGCCTCAACGCGTTTCATGA 5751719
Query 72035 AGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTG 72094
||||||| || ||||| || || ||| ||||| | | | || ||| || || || |
Sbjct 5751720 AGAGATCGGGTATCCACAGGGCGTAAAACAGATCGCGTGCGCGATTCTCTTCTTTGCCCG 5751779
Query 72095 TATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGG 72154
| ||||| || || || |||||| | | | ||| || ||||| |||||||| || ||||
Sbjct 5751780 TGTTCTTCTTCAGTTCCAGGAACTCAAAGACATCCGAGTGCCAGGGTTCCAAATAAATGG 5751839
Query 72155 CCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAA 72214
| | | || || || ||| ||||||||||| | || | || ||||| | |
Sbjct 5751840 CAAAGGCACCGGGACGCTTGCCGCCTCCCTGATCCACATAACGTGCCACATTATTGAAGA 5751899
Query 72215 CTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCAC 72274
| |||| ||| |||| | |||||||| | |||||| || ||| | || || | ||
Sbjct 5751900 CCCTCAGCATGGGAACCAACCCATTGGAAGTACCATTTGTGCCGCAAATCGAGGTGCCCT 5751959
Query 72275 TGGCACGAAT--ATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGC 72332
| |||||||| | ||| ||| || || || || || || || ||||| | ||
Sbjct 5751960 TTGCACGAATGCAATGCACGTTG--AGTCCGATGCCACCGGCGGACTTGGAGATCATGGC 5752017
Query 72333 GCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAA 72392
|||| ||| | | | | |||||||| || || | ||||| | || || ||
Sbjct 5752018 GCATTGTTCCACAGACTTGAAAATGCCCTCGATGGAGTCGGCTGTCATGGTCAGAAGGAA 5752077
Query 72393 ACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGT 72452
||| |||| || | || | || | || ||| | || || || || |||||
Sbjct 5752078 ACACGACGACAACTGCGGCCGGTTTGTGGCAGCGGCAAACAGTGTGGGCGATGCATGCGT 5752137
Query 72453 AAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATG 72512
|| | || ||||| ||||| || || || | || | || |||||| | |||
Sbjct 5752138 GAAGTAGCGCTCCGACAGAAGATTATAGGTTTCCACGGCCGCATCGATATCCTCTCCATG 5752197
Query 72513 TATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTAT 72572
||||| | ||| || ||||| | ||||||||| |||| || ||||||| ||| |
Sbjct 5752198 GATTCCGATCGCAACGCGCATCAGCATATGCTGCGGTCGCTCTGCGATCTTTCCGTTTCT 5752257
Query 72573 TTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCG 72632
|| | | ||||| |||| || || || ||||||||||| || |||||| ||
Sbjct 5752258 CTTGAGAAGATAGGAACGCTCCAGCGTCTTGAAGCCAAAATAGTTATAGCCAAAGTCACG 5752317
Query 72633 TTCGTAAATAAT 72644
|| || || ||
Sbjct 5752318 ATCATAGATTAT 5752329
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671015618105560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |