Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18] 14,731 sequences; 166,592,095 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq1555 298 7e-76 >seq1555 Length=7220098 Score = 298 bits (330), Expect = 7e-76 Identities = 1194/1872 (64%), Gaps = 30/1872 (2%) Strand=Plus/Plus Query 70791 CTTGTCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATGCC 70850 ||||| || || |||||||||| | | || | || || || ||||||||||| || Sbjct 5750470 CTTGTTCACGGTGAACTGAATGGCATTCGCAGCTGGCTTGGTGCGCAGATAGTACATTCC 5750529 Query 70851 TGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGG 70910 ||||| ||||| |||| |||||| || || || || || |||| | || Sbjct 5750530 GGTTTTAAGACCTGCTTTCCAGGAGTAAAAGTGTATGGAAGTCAGCTTTCCATAGTTTGG 5750589 Query 70911 ATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGC 70970 ||||| | || || || | ||||||||| ||||| ||||| || || | || || || Sbjct 5750590 CTCGGCCACATGTATGTTGAACGACTGACTCTGATCTATGAACGCACCACGATCGGCGGC 5750649 Query 70971 CATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAA---CTCGCTTAAT 71027 |||||| || | | ||| || |||||||| | || ||||| | ||||| Sbjct 5750650 CATTTTAATCGTGGACTTGACTGAGATTTCCCACACCGTCTTATACAGATCTCGC----- 5750704 Query 71028 ATCTTCTGG---AAGGTTTGTAT--TCTGAATGGATCCACCATCTGCA-ATAATCCTATT 71081 | ||||||| | ||| | || | ||||| ||||| || ||| | || ||| || Sbjct 5750705 ACCTTCTGGGGGATGGTCTCAATGTTTTGAATCGATCC-CCTGCTGGATATGATCTGGTT 5750763 Query 71082 TTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAAC 71141 || || || || | ||| || | |||||||| | | | | |||| | || || Sbjct 5750764 CTTCATGTCGTCGTCCCACAAGTCCAGCTCGGTTAGGTCGCGCAACAAATGATGGTTGAC 5750823 Query 71142 TACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCAC 71201 || || ||||| || |||| |||| || ||||| || || |||| || || || | Sbjct 5750824 CACCTGGAATTCGCCGGACAGAACTCGCCGGGTGTATATGTTCGTGGTGTAGGGCTCGAA 5750883 Query 71202 TGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAG 71261 || ||||| || |||| || ||||| || |||||||| ||||| || || || | || Sbjct 5750884 GGATTCATTGTTGCCCATTATCTGAGCCGTAGATGCAGTGGGCATGGGAGCAACGAGCAG 5750943 Query 71262 ACTATTTCTAAGACCATGTGATCGGATTTTA-TCTTTTAGAGATTCCCAATTCCAAAGAT 71320 || | | ||| || || | | | || || | | ||| | ||| || | Sbjct 5750944 GGAGTTCCGGACACCGTGCT-TCTTAATGGACTCCTTCAATTTCTGCCAGTCCCACAGGT 5751002 Query 71321 CCGATGGTACAACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACT-AGCGTATGATCCT 71379 || ||| || || || || || | || ||| Sbjct 5751003 TCGTTGGCACCTTGTCCCACATGTCGTACTGCAAAATTCCTTTGCTCACCGGGCTGCCCT 5751062 Query 71380 GCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCA 71439 | || || ||||||| ||||| | | ||| ||||| || || || || || || ||| Sbjct 5751063 -CGTAGGTTTCGTATGCACCTTCGGTCTGGGCCAGTTCGCAGCTGGCTTCCAAGGCGCCA 5751121 Query 71440 TAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGA 71499 || |||||||||||||| |||| || ||| | | ||||| ||| || | || Sbjct 5751122 TAGTAAATGGTTTCGAATATCTGCTGATTCAAAAGACCGGCTTCTTCGCTTTCGTACGGG 5751181 Query 71500 TAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGT 71559 || | |||||| || || || || ||||| |||| ||||| || | || | ||| Sbjct 5751182 AAACGCATGAGAATCAAGGCATCAGCGAATCCCTGAATACCAATGCCCACGGGACGGTGC 5751241 Query 71560 CTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTG 71619 ||| ||| || | || || || | |||||||| || ||||| || || || || Sbjct 5751242 CTCAAATTGGACTTCCTTGCCTCCGGCAGGGGATAATAGTTGATATCAATTATCTTGTTT 5751301 Query 71620 AGATTTCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCTCCCATCT 71679 |||||| || | || ||| || ||||| || || ||||||| | || || Sbjct 5751302 AGATTTTTGGTAACTATCTTGGTGACTTCCTTGAGCTTCTTAAAATCATACGTCTTCTCC 5751361 Query 71680 A---TTACAAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCA 71736 | || |||| ||| | ||| | || |||| || || || || | ||||| | Sbjct 5751362 GGCGTGACGAACATGTTGAGGGCGATGGAGGCCAAGTTGCAGACTGCAATCTCATCCGGT 5751421 Query 71737 TCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGT 71796 || ||||| | ||||| ||||| | || || ||||||||||| || | ||| || Sbjct 5751422 GAGGAATATTCAACGATTTCCGTGCACAAGTTGCTGCACTTGATGGTGCCCACATTCTGC 5751481 Query 71797 TGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATC 71856 || || ||||| |||| || || ||||| | || || ||||| | || || || | Sbjct 5751482 TGGTTGCTCTTCCTGTTGCAAGCGTCCTTGAAGAGCATGTACGGATTTCCGGTCTCCACT 5751541 Query 71857 TGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATATTCTTGTATCTCTTT 71916 || | || || || || ||| | | | ||||||| | | ||| | | Sbjct 5751542 TGCGCCTCAATGATGGCAAACCACAGGGATTGAGCCTTAACCGTTCGGTTGG--CCCGAC 5751599 Query 71917 TCTCTT--TCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATC 71974 ||||| ||||||| || | |||||| || || ||||| | | || | | Sbjct 5751600 CCTCTTGCTCGTATTTCTCGTACAGCTTTTCGAATTCATCGCCCCACACTTCGTGGAGAC 5751659 Query 71975 CAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAA 72034 ||||||| | | || ||||| | ||||| || || | | | || |||||||| | Sbjct 5751660 CAGGACACTTGTGGGGGCACATGAGCGACCAATCACCGTTGGCCTCAACGCGTTTCATGA 5751719 Query 72035 AGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTG 72094 ||||||| || ||||| || || ||| ||||| | | | || ||| || || || | Sbjct 5751720 AGAGATCGGGTATCCACAGGGCGTAAAACAGATCGCGTGCGCGATTCTCTTCTTTGCCCG 5751779 Query 72095 TATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGG 72154 | ||||| || || || |||||| | | | ||| || ||||| |||||||| || |||| Sbjct 5751780 TGTTCTTCTTCAGTTCCAGGAACTCAAAGACATCCGAGTGCCAGGGTTCCAAATAAATGG 5751839 Query 72155 CCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAA 72214 | | | || || || ||| ||||||||||| | || | || ||||| | | Sbjct 5751840 CAAAGGCACCGGGACGCTTGCCGCCTCCCTGATCCACATAACGTGCCACATTATTGAAGA 5751899 Query 72215 CTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCAC 72274 | |||| ||| |||| | |||||||| | |||||| || ||| | || || | || Sbjct 5751900 CCCTCAGCATGGGAACCAACCCATTGGAAGTACCATTTGTGCCGCAAATCGAGGTGCCCT 5751959 Query 72275 TGGCACGAAT--ATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGC 72332 | |||||||| | ||| ||| || || || || || || || ||||| | || Sbjct 5751960 TTGCACGAATGCAATGCACGTTG--AGTCCGATGCCACCGGCGGACTTGGAGATCATGGC 5752017 Query 72333 GCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAA 72392 |||| ||| | | | | |||||||| || || | ||||| | || || || Sbjct 5752018 GCATTGTTCCACAGACTTGAAAATGCCCTCGATGGAGTCGGCTGTCATGGTCAGAAGGAA 5752077 Query 72393 ACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGT 72452 ||| |||| || | || | || | || ||| | || || || || ||||| Sbjct 5752078 ACACGACGACAACTGCGGCCGGTTTGTGGCAGCGGCAAACAGTGTGGGCGATGCATGCGT 5752137 Query 72453 AAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATG 72512 || | || ||||| ||||| || || || | || | || |||||| | ||| Sbjct 5752138 GAAGTAGCGCTCCGACAGAAGATTATAGGTTTCCACGGCCGCATCGATATCCTCTCCATG 5752197 Query 72513 TATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTAT 72572 ||||| | ||| || ||||| | ||||||||| |||| || ||||||| ||| | Sbjct 5752198 GATTCCGATCGCAACGCGCATCAGCATATGCTGCGGTCGCTCTGCGATCTTTCCGTTTCT 5752257 Query 72573 TTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCG 72632 || | | ||||| |||| || || || ||||||||||| || |||||| || Sbjct 5752258 CTTGAGAAGATAGGAACGCTCCAGCGTCTTGAAGCCAAAATAGTTATAGCCAAAGTCACG 5752317 Query 72633 TTCGTAAATAAT 72644 || || || || Sbjct 5752318 ATCATAGATTAT 5752329 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671015618105560