Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18] 14,731 sequences; 166,592,095 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq1555 109 6e-19 seq1556 105 7e-18 >seq1555 Length=7220098 Score = 109 bits (120), Expect = 6e-19 Identities = 443/686 (65%), Gaps = 39/686 (6%) Strand=Plus/Plus Query 156767 GCCAGTTCGTAACTGGCCTCGAGCGCAGCATGATACACAGTTTCAGCAATTTGTTTATTC 156826 ||||||||| | ||||| || | || ||| || | ||||| || || | |||| Sbjct 5751092 GCCAGTTCGCAGCTGGCTTCCAAGGCGCCATAGTAAATGGTTTCGAATATCTGCTGATTC 5751151 Query 156827 AATAGAACGGCAGCATCGCTCACGTACGGTATGCGCAACATAACAAATGCATCGGCCAAA 156886 || ||| |||| | ||||| ||||||| | |||| | || || ||||| || || Sbjct 5751152 AAAAGACCGGCTTCTTCGCTTTCGTACGGGAAACGCATGAGAATCAAGGCATCAGCGAAT 5751211 Query 156887 CCTTGAATGCCAATGCCGATGGGACGATGGCGCATATTAGAtttttttGCAGTTTCAATA 156946 || ||||| |||||||| | |||||| || | || ||| || || |||| | | | Sbjct 5751212 CCCTGAATACCAATGCCCACGGGACGGTGCCTCAAATTGGACTTCCTTGCC--TCCGGCA 5751269 Query 156947 GGGTAGAAA--TTGCGATCAATAATTTTATTCAAACTATCCACTAC-ATGTT--TGACCA 157001 ||| | || ||| |||||| || || || | | | | || || || |||| Sbjct 5751270 GGGGATAATAGTTGATATCAATTATCTTGTTTAGATTTTTGGTAACTATCTTGGTGACTT 5751329 Query 157002 CAGTGTGCAATAGTTGAAAATCAAAAGTATCATTAT---TGATATATTTATTGACGGCAA 157058 | || || | || ||||||| | || | | ||| | | |||| ||| | Sbjct 5751330 CCTTGAGC--TTCTT-AAAATCATACGTCTTCTCCGGCGTGACGAACATGTTGAGGGCGA 5751386 Query 157059 TCGACGCTAGATTACATACGGCAGTTTCGTCGGGCGCGCAATATTGTACTATTTCCGCAC 157118 | || || | || || || ||| | || || || | | |||||| || ||||||| | Sbjct 5751387 TGGAGGCCAAGTTGCAGACTGCAATCTCATCCGGTGAGGAATATTCAACGATTTCCGTGC 5751446 Query 157119 ACAAATTGCTGCATTTTATCAATCCGCAATTACTTTGATTGCTTTTGCGGTTGCAAGCGT 157178 |||| |||||||| || || || ||| || ||||| || | ||||||||||| Sbjct 5751447 ACAAGTTGCTGCACTTGATGGTGCCCACATTCTGCTGGTTGCTCTTCCTGTTGCAAGCGT 5751506 Query 157179 CCTTGTATAACATGTACGGTGTGCCGGTTTCGGCTTGAATTTCTATGATGTTGC------ 157232 ||||| | | ||||||||| | ||||| || |||| || |||||| || Sbjct 5751507 CCTTGAAGAGCATGTACGGATTTCCGGTCTCCACTTGCGCCTCAATGATG--GCAAACCA 5751564 Query 157233 ---GCATTAA--TGTAACCG--CGGGCATTTGCTCGCGAAACTGGCCTTTATCCTCGTAA 157285 | ||| | |||||| ||| || || || || ||| | | |||||| Sbjct 5751565 CAGGGATTGAGCCTTAACCGTTCGG---TTGGCCCG----AC---CCTCT-TGCTCGTAT 5751613 Query 157286 TGTTTGTACCAGTATTCAAAGTCATCACCATACGTATCGTTGAGCTTAGGACACTCGTTA 157345 | | |||| | ||| || ||||| || || |||| ||| |||||||| || Sbjct 5751614 TTCTCGTACAGCTTTTCGAATTCATCGCCCCACACTTCGTGGAGACCAGGACACTTGTGG 5751673 Query 157346 GGACACATTAATGACCATATACCGTTTTCTTCAACGCGTTTCATAAATATATCGGGAACC 157405 || ||||| | ||||| |||||| | |||||||||||||| || | |||||| | | Sbjct 5751674 GGGCACATGAGCGACCAATCACCGTTGGCCTCAACGCGTTTCATGAAGAGATCGGGTATC 5751733 Query 157406 CATAAAGCGTTCATCAAATCACGCGC 157431 || | |||| | || ||| || || Sbjct 5751734 CACAGGGCGTAAAACAGATCGCGTGC 5751759 Score = 95.1 bits (104), Expect = 1e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 143030 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 143089 ||||| || || || ||||| |||||||||| |||||||| ||||| || ||||||||| Sbjct 5837872 TCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTG 5837813 Query 143090 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACC 143149 || ||| || ||| | | ||| | || |||| ||||| || |||| ||| | Sbjct 5837812 TCCTGAATCTTGGCTTTGACATTTTCGATAGTATCCGACGGTTCGACCTCAAGAGTGATG 5837753 Query 143150 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||||||| || | || || ||||| || ||||| Sbjct 5837752 GTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCAT 5837718 >seq1556 Length=7591821 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | ||| || |||| || || || || || |||||||||||| | Sbjct 3892977 CCACCACGCAGACGGAGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGAC 3893036 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| |||||| ||||| || || || |||| ||||| |||||||| || | Sbjct 3893037 AGGGTGCGTCCGTCTTCCAGTTGCTTGCCGGCGAAGATGAGACGCTGCTGATCTGGGGAG 3893096 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || || || || || ||| || || | | || | ||||||| |||||||| Sbjct 3893097 ATTCCCTCCTTATCCTGAATCTTAGCCTTAACATTCTCGATGGTGTCCGACGGTTCTACC 3893156 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 |||| ||| | ||||| |||||||| || || ||||| || |||||| Sbjct 3893157 TCAAGAGTGATGGTCTTTCCGGTCAAAGTCTTCACGAAGATCTGCATA 3893204 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | ||| ||||| | || || || || || |||||||||||| | Sbjct 3893205 CCACCACGCAGACGGAGAACCAAATGGAGGGTTGACTCCTTCTGGATGTTGTAATCGGAC 3893264 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| |||||| | ||| || ||||| |||||||||| |||||||| || || Sbjct 3893265 AGGGTGCGTCCGTCTTCCAATTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGGGGA 3893324 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || || || ||||| ||||| || | | || | ||||||| || || || Sbjct 3893325 ATTCCCTCCTTGTCTTGGATTTTAGCCTTCACATTCTCAATGGTGTCCGATGGCTCAACC 3893384 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | ||| | |||||||| || | || || ||||| || |||||| Sbjct 3893385 TCCAAAGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATA 3893432 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | ||| || |||| || || || || || |||||||||||| | Sbjct 3893661 CCACCACGCAGACGGAGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGAC 3893720 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| ||| || || || || || || |||||||||| |||||||| || || Sbjct 3893721 AGGGTGCGTCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGG 3893780 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || || || || || ||| || || | | || | ||||||| |||||||| Sbjct 3893781 ATTCCCTCCTTATCCTGAATCTTAGCCTTAACATTCTCGATGGTGTCCGACGGTTCTACC 3893840 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 |||| | | ||||| |||||||| || || ||||| || |||||| Sbjct 3893841 TCAAGGTTGATGGTCTTTCCGGTCAAAGTCTTCACGAAGATCTGCATA 3893888 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | ||| ||||| | || || || || || |||||||||||| | Sbjct 3893889 CCACCACGCAGACGGAGAACCAAATGGAGGGTTGACTCCTTCTGGATGTTGTAATCGGAC 3893948 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| |||||| | ||| || ||||| |||||||||| |||||||| || || Sbjct 3893949 AGGGTGCGTCCGTCTTCCAATTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGGGGA 3894008 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || || || ||||| ||||| || | | || | ||||||| || || || Sbjct 3894009 ATTCCCTCCTTGTCTTGGATTTTAGCCTTCACATTCTCAATGGTGTCCGATGGCTCAACC 3894068 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | ||| | |||||||| || | || || ||||| || |||||| Sbjct 3894069 TCCAAAGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATA 3894116 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 |||||||| | ||||| ||| || |||| || || || || || ||||||||||| | Sbjct 3894573 CCTCCTCGCAGACGCAGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGAC 3894632 Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | |||| || | || || || || || || || |||||||||| |||||||| || || Sbjct 3894633 AGGGTGCGTCCA-TCCTCAAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCTGGGGG 3894691 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || || || || || ||| || || | | || | || || | || ||||| Sbjct 3894692 AATTCCCTCCTTATCCTGAATCTTAGCCTTAACATTCTCAATGGTATCAGAAGGCTCTAC 3894751 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 || | || | ||||| |||||||| || || ||||| || |||||| || Sbjct 3894752 CTCGAGGGTGATAGTCTTTCCGGTCAAAGTCTTCACGAAGATCTGCATACCT 3894803 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 |||||||| | ||||| ||| || |||| || || || || || ||||||||||| | Sbjct 3895257 CCTCCTCGCAGACGCAGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGAC 3895316 Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | |||| || | || || || || || || || |||||||||| |||||||| || || Sbjct 3895317 AGGGTGCGTCCA-TCCTCAAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCTGGGGG 3895375 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || || || || || ||| || || | | || | ||||| | || ||||| Sbjct 3895376 AATTCCCTCCTTATCCTGAATCTTAGCCTTAACATTCTCAATGGTGTCAGACGGCTCTAC 3895435 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | ||||| |||||||| || || || || || ||||| Sbjct 3895436 CTCGAGGGTGATGGTCTTTCCGGTCAAGGTCTTCACAAAGATCTGCAT 3895483 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | ||| || |||| || || || || || |||||||||||| | Sbjct 3893433 CCACCACGCAGACGGAGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGAC 3893492 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| |||||| ||||| || || || |||| ||||| |||||||| || || Sbjct 3893493 AGGGTGCGTCCGTCTTCCAGTTGCTTGCCGGCGAAGATGAGACGCTGCTGATCTGGGGGG 3893552 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || || || || || ||| || || | | || | ||||||| || || || Sbjct 3893553 ATTCCCTCCTTATCCTGAATCTTAGCCTTCACATTCTCAATGGTGTCCGATGGCTCAACC 3893612 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | ||| | |||||||| || | || || ||||| || |||||| Sbjct 3893613 TCCAAAGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATA 3893660 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | ||| || |||| || || || || || |||||||||||| Sbjct 3894345 CCACCACGCAGACGGAGAACCAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAATCGGAA 3894404 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| ||| || |||||||| || || |||| ||||| |||||||| || || Sbjct 3894405 AGGGTGCGTCCGTCCTCCAGTTGTTTGCCGGCGAAGATGAGACGCTGCTGATCTGGGGGG 3894464 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 ||||| || ||||| || || || | | || | ||||||| || || || Sbjct 3894465 ATGCCCTCCTTGTCTTGGATCTTAGCCTTCACATTCTCAATGGTGTCCGATGGCTCAACC 3894524 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 || | ||| | |||||||| || | || || ||||| || |||||| || Sbjct 3894525 TCCAAAGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATACCT 3894575 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | ||| || |||| || || || || || |||||||||||| Sbjct 3895029 CCACCACGCAGACGGAGAACCAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAATCGGAA 3895088 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| ||| || |||||||| || || |||| ||||| |||||||| || || Sbjct 3895089 AGGGTGCGTCCGTCCTCCAGTTGTTTGCCGGCGAAGATGAGACGCTGCTGATCTGGGGGG 3895148 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 ||||| || ||||| || || || | | || | ||||||| || || || Sbjct 3895149 ATGCCCTCCTTGTCTTGGATCTTAGCCTTCACATTCTCAATGGTGTCCGATGGCTCAACC 3895208 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 || | ||| | |||||||| || | || || ||||| || |||||| || Sbjct 3895209 TCCAAAGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATACCT 3895259 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | ||| | || || |||| || || || || || |||||||||||| Sbjct 3892749 CCTCCACGGAGACGGAGCACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGAA 3892808 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| |||||| ||||| || || || |||| ||||| |||||||| || || Sbjct 3892809 AGGGTGCGTCCGTCTTCCAGTTGCTTGCCGGCGAAGATGAGACGCTGCTGATCTGGGGGG 3892868 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || || || || || ||| || || | | || | ||||||| || || || Sbjct 3892869 ATTCCCTCCTTATCCTGAATCTTAGCCTTCACATTCTCAATGGTGTCCGATGGCTCAACC 3892928 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | ||| | |||||||| || | || || ||||| || |||||| Sbjct 3892929 TCCAAAGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATA 3892976 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | ||| | ||| | |||| || || || || || |||||||||||| Sbjct 3894801 CCTCCACGCAGACGGAGAACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGAA 3894860 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| ||| || |||||||| || || |||| ||||| |||||||| || || Sbjct 3894861 AGGGTGCGTCCGTCCTCCAGTTGTTTGCCGGCGAAGATGAGACGCTGCTGATCTGGGGGG 3894920 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || || || || || ||| || || | | || | ||||||| || || || Sbjct 3894921 ATTCCCTCCTTATCCTGAATCTTAGCCTTCACATTCTCAATGGTGTCCGATGGCTCAACC 3894980 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | ||| | |||||||| || | || || ||||| || |||||| Sbjct 3894981 TCCAAAGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATA 3895028 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506921039635920