Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18] 14,731 sequences; 166,592,095 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq1557 297 3e-75 seq1555 214 3e-50 seq1554 194 2e-44 seq1553 170 3e-37 >seq1557 Length=14215200 Score = 297 bits (328), Expect = 3e-75 Identities = 581/850 (68%), Gaps = 34/850 (4%) Strand=Plus/Minus Query 125038 AGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTAC-GAT 125096 ||||| |||| || || ||||| ||||| ||||| ||| ||||||||||||| ||| || Sbjct 5422487 AGGCTGAGGCTTCTTTCTGGACCGTCGAGGAGGTGGATTTGTCCAAGGACCT-TACTGAC 5422429 Query 125097 TGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTT 125156 ||| | || ||| || ||||| | || || |||||| | |||||||||| Sbjct 5422428 TGGCAC---CGCCTGAAGGACGACGAGCGCCATTTCATCTCGCACGTGCTGGCCTTCTTC 5422372 Query 125157 GCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTGACC 125216 |||| ||| ||||| ||||| ||||| || ||| || || ||| ||| ||| || Sbjct 5422371 GCCGCCTCTGATGGCATCGTAAACGAGAACCTGGTGGAGCGCTTCAGTCAGGAGGTGCAG 5422312 Query 125217 ATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAA 125276 || | |||| ||||| ||||| ||||| ||| || ||||||||||||||||| Sbjct 5422311 ATCACGGAGGCACGATGCTTCTACGGCTTCCAGATCGCCATGGAGAACGTGCACTCGGAG 5422252 Query 125277 ATGTACTCTACACTGATTGACATGTACATTCGCGATCCGCAACGTAAACACATGCTCTTT 125336 |||||| | |||| |||| ||||| || ||||| || | | | || || Sbjct 5422251 ATGTACAGTGTTTTGATCGACACTTACATCCGGGATCCACACCAGCGAGAGTACCTGTTC 5422192 Query 125337 AACGCAATCGACACGGTGCCGTCTATACGTAAA----AAGGCTCAATGGGTGATTCGGTG 125392 ||||| ||||| ||| ||||| || || || ||||| | |||| | || Sbjct 5422191 AACGCTATCGAAACGATGCCGGCT----GTGAAGCGCAAGGCAGACTGGGCCCTGTCCTG 5422136 Query 125393 GATCGATGACGACAAGTCTTC---GTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGA 125449 |||| | | |||||| | | || || | | | || || |||||||| || Sbjct 5422135 GATC--TCA-TCCAAGTCGGCCAATTTCGGGGAGCGCATCATCGCCTTTGCCGCCGTGGA 5422079 Query 125450 GGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCAT 125509 |||||| ||||| || || || || |||| || ||||| ||||||||||| || || Sbjct 5422078 GGGCATTTTCTTCAGCGGCAGCTTCGCCTCCATTTTCTGGCTTAAGAAGCGCGGTCTGAT 5422019 Query 125510 GCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTT 125569 ||| ||| |||| | |||||| | || ||||| ||||||||| | ||||| ||||| Sbjct 5422018 GCCTGGATTGACCTTCTCCAACGAGCTGATCTCTCGCGACGAGGGCTTGCACTGCGACTT 5421959 Query 125570 TGCCATTCTACTGTTTC-GCAACT--ATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAA 125626 |||| | || |||| | ||| || | ||| ||| || | | |||| Sbjct 5421958 TGCCGTGCTGATGTTCCAGCACCTGGTGCAGCGACCCAAGCG-----CGAGCG------- 5421911 Query 125627 GGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCT 125686 ||||| | || | ||| || ||| ||||| || ||||| || ||||| |||| Sbjct 5421910 CATCATCGAGATCATCCGCGACGCGGTGGCCATAGAGCAGGAGTTCCTCACCGATGCCCT 5421851 Query 125687 ACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGC 125746 || |||| |||| |||||||| ||| | || |||| | ||||||| ||||| || || Sbjct 5421850 GCCCGTCAATTTGATCGGCATGAATTGCGACCTGATGTCCCAGTACATTGAGTTCGTAGC 5421791 Query 125747 AGATCGTCTACTGTACGAGTTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGA 125806 || ||| | || |||||| | | ||||| |||||| |||| || || ||| | Sbjct 5421790 GGACCGTTTGCTCGTGGAGTTGGGCGTTGGAAAGATCTACAACACCAAAAACCCATTTAA 5421731 Query 125807 TTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGA 125866 |||||| | ||||| || || || |||||||||||||||||||||||||| || Sbjct 5421730 CTTCATGGAGATGATATCGCTGGACGGAAAGACCAACTTTTTCGAGAAGAAGGTGGCGGA 5421671 Query 125867 GTACAAACGC 125876 |||| | ||| Sbjct 5421670 GTACCAGCGC 5421661 >seq1555 Length=7220098 Score = 214 bits (236), Expect = 3e-50 Identities = 953/1491 (64%), Gaps = 60/1491 (4%) Strand=Plus/Minus Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGT--CAC 96864 ||||| || | ||| ||| | || || ||||| || | | |||| ||||| ||| Sbjct 5751939 ACAAATGGTACTTCCAATGGGTTGGTTCCCATGCTGAGGGTCTTCAAT--AATGTGGCAC 5751882 Query 96865 GATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTT 96924 | || || ||||| ||| || || || || || | ||| | || |||||||| | Sbjct 5751881 GTTATGTGGATCAGGGAGGCGGCAAGCGTCCCGGTGCCTTTGCCATTTATTTGGAACCCT 5751822 Query 96925 GGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCAC 96984 ||||| |||| || ||||| || | || || || ||| | ||| |||||| | Sbjct 5751821 GGCACTCGGATGTCTTTGAGTTCCTGGAACTGAAGAAGAACACGGGCAAAGAAGAGAATC 5751762 Query 96985 GAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACG 97044 | || | || ||||||| || || ||| | || ||| | |||||||| ||||| | | Sbjct 5751761 GCGCACGCGATCTGTTTTACGCCCTGTGGATACCCGATCTCTTCATGAAACGCGTTGAGG 5751702 Query 97045 ---ACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCT 97101 |||||| | ||| || ||||||||| || || || ||||| ||| | Sbjct 5751701 CCAACGGTG---ATTGGTCGCTCATGTGCCCCCACAAGTGTCCTGGTCTCCACGAAGTGT 5751645 Query 97102 GGGGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGAGAC 97161 ||||||| || || || |||| | |||||||||||||| || | || Sbjct 5751644 GGGGCGATGAATTCGAAAAGCTGTACGAGAAATACGAGCAAGAGGGTCGGGCCAACCGAA 5751585 Query 97162 GAGTCGATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTC 97221 || | || | | |||||| |||||| | ||| || || ||||| |||| || Sbjct 5751584 CGGTTAAGGCTCAATCCCTGTGGTTTGCCATCATTGAGGCGCAAGTGGAGACCGGAAATC 5751525 Query 97222 CGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCA 97281 ||||||| |||| |||||| | || | || |||||||| | | ||||||||| Sbjct 5751524 CGTACATGCTCTTCAAGGACGCTTGCAACAGGAAGAGCAACCAGCAGAATGTGGGCACCA 5751465 Query 97282 TCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAG 97341 ||||| || ||| ||||||||||||| || || || |||| ||||| |||| |||| Sbjct 5751464 TCAAGTGCAGCAACTTGTGCACGGAAATCGTTGAATATTCCTCACCGGATGAGATTGCAG 5751405 Query 97342 TTTGCGTTCTGGCATCGGTCAATCTGCCCAAGTTTGTAGAG--GGTAAAG-----TGTTT 97394 | ||| |||| || || || || ||| || | || ||| || || Sbjct 5751404 TCTGCAACTTGGCCTCCATCGCCCTCAACATGTTCGTCACGCCGGAGAAGACGTATGATT 5751345 Query 97395 -----AATCTCAACCTATTGGCAAAGACGGTGCGTCTGGTGACTAGGAATCTAAACAAGA 97449 || ||||| | | | |||| | || || | ||||||||||||| Sbjct 5751344 TTAAGAAGCTCAAGGAAGTCACCAAGA---------TAGTTACCAAAAATCTAAACAAGA 5751294 Query 97450 TTATCGACAATGCACTCT-ATCCCATTCCCTCGGCTGCCAAGTCAAACTTTAAGCACCGA 97508 | || || | | ||| | ||||| | || ||| ||||| || || | |||||| Sbjct 5751293 TAATTGATA-TCAACTATTATCCCCTGCCGGAGGCAAGGAAGTCCAATTTGAGGCACCGT 5751235 Query 97509 CCCATCGGTATAGGAGTGCAAGGCTACGCAGACGCTCTGGCCATGATGGGTATAGCCTAC 97568 ||| | || || || | || || | ||| || || || | ||| || | | ||| Sbjct 5751234 CCCGTGGGCATTGGTATTCAGGGATTCGCTGATGCCTTGATTCTCATGCGTTTCCCGTAC 5751175 Query 97569 GAGGACTCGATGCAG--------TTGAATCGTGACATTTTCGAAACCATCTACCATGCAG 97620 || | ||| | || ||||||| | || ||||||||||| ||| ||| | Sbjct 5751174 GA--AAGCGAAGAAGCCGGTCTTTTGAATCAGCAGATATTCGAAACCATTTACTATGGCG 5751117 Query 97621 CACTGACGGAGAGTTGCCAACTGGCC-AGAGTGCACGGAGTCTACGAATCGTACCACGGT 97679 | || | || ||| |||||||| ||| | | || | |||||| | ||| | || Sbjct 5751116 CCTTGGAAGCCAGCTGCGAACTGGCCCAGACCGAA-GGTGCATACGAAACCTACGAGGGC 5751058 Query 97680 AGCCCGACCAGTCGTGGAGAGTTGCACTTCGACCGAT---ACTCGGTGCACAGCCAAAA- 97735 |||||| || ||| ||||| | |||| | || ||||| || | || Sbjct 5751057 AGCCCGGTGAGCAAAGGAATTTTGCAGTACGACATGTGGGACAAGGTGC-CAACGAACCT 5750999 Query 97736 GTGTGACTGGTCATCGTTGCGCAAAGA---CATTGCTCGGTACGGTTTGAGAAACTCTTT 97792 ||| |||||| ||| || || |||| | ||||| | | ||||| | Sbjct 5750998 GTGGGACTGGCAGAAATTG---AAGGAGTCCATTAAGAAGCACGGTGTCCGGAACTCCCT 5750942 Query 97793 GCTGGTGGCACCGATGCCCACGGCTACCACTTCCCAAGTGTTTGGCAATGCTGAATCTTT 97852 ||| || || || |||||||| || | || | || | | ||||| |||||| || Sbjct 5750941 GCTCGTTGCTCCCATGCCCACTGCATCTACGGCTCAGATAATGGGCAACAATGAATCCTT 5750882 Query 97853 TGAACCGTTCACGTCAAACATGTACCAGAGACGCACCCAGTCTGGAGAGTTTCAATTGAC 97912 || || | ||| | ||||| ||| | || | ||| || || || || || Sbjct 5750881 CGAGCCCTACACCACGAACATATACACCCGGCGAGTTCTGTCCGGCGAATTCCAGGTGGT 5750822 Query 97913 CAACGTGCACTTGGTTCGAGACTTGGAACG-GCTCAATCTGTGGAACGATGACATGGCCC 97971 |||| || ||| | || ||| | | || ||| | ||||| |||| |||||| Sbjct 5750821 CAACCATCATTTGTTGCGCGACCTA-ACCGAGCTGGACTTGTGGGACGACGACATGAAGA 5750763 Query 97972 AGTTGATCATGTACAACAATGGGTCCATTCAAAACATTACCATCATCCCGGAAGAGTTGC 98031 | |||||| | || || || || |||||||||||| | |||||| | || ||| Sbjct 5750762 ACCAGATCATATCCAGCAGGGGATCGATTCAAAACATTGAGACCATCCCCCAGAAGGTGC 5750703 Query 98032 GCAGAA-TCTACAAGACTGTCTGGGAGATTCCGACCAAGACGCTGATCGATATGGCTGCC 98090 | ||| | || ||||| || ||||| || | |||| | ||| | ||||| ||| Sbjct 5750702 G-AGATCTGTATAAGACGGTGTGGGAAATCTCAGTCAAGTCCACGATTAAAATGGCCGCC 5750644 Query 98091 GACAGAGGTGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACC 98150 || | |||| | ||| || |||||||| |||||||| | | || |||||||| | | Sbjct 5750643 GATCGTGGTGCGTTCATAGATCAGAGTCAGTCGTTCAACATACATGTGGCCGAGCCAAAC 5750584 Query 98151 TACAGTCGTATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATG 98210 || | ||||||| |||||||||||| | ||||| || || || || || ||| Sbjct 5750583 TATGGAAAGCTGACTTCCATACACTTTTACTCCTGGAAAGCAGGTCTTAAAACCGGAATG 5750524 Query 98211 TACTATCTGAGAACAAAGTCGGCCACCAATGCCATACCATTTACGGTGGAC 98261 ||||||||| | || ||| | || | |||||||| | || || ||| || Sbjct 5750523 TACTATCTGCGCACCAAGCCAGCTGCGAATGCCATTCAGTTCACCGTGAAC 5750473 >seq1554 Length=6179234 Score = 194 bits (214), Expect = 2e-44 Identities = 395/577 (68%), Gaps = 20/577 (3%) Strand=Plus/Minus Query 127102 TTGCGGTAAAAGATGACTCCGGCTCGAGGACCTCTGAGAGTCTTGTGCGTTGTAGTGG-T 127160 |||||| | ||||| || ||||| || ||||||| || ||||||||||| || |||| | Sbjct 951366 TTGCGGAAGAAGATCACGCCGGCGCGCGGACCTCGCAGCGTCTTGTGCGTGGTGGTGGGT 951307 Query 127161 CACAATGTCACAATACTCAAAGGGGCCAGGAATGACTTTGCCCGCAATCAAGCCCGCAAT 127220 ||||||||| |||| || || || || | | | | || | | |||||| | Sbjct 951306 CACAATGTCGGCCCACTCGAACGGCGATGGTATCAATCCGGCGGCCACAATGCCCGCCAC 951247 Query 127221 GTGTGCAATATCGG-CCATCAGCAAGGA-GCCGGCTGCATCGGCAATCTCTCGGAATCGT 127278 || || || |||| ||||||| ||| ||| | ||||| ||||| ||||| || Sbjct 951246 ATGGGCCATGTCGGGCCATCAGGTAGGGCGCCCACATCATCGCAAATCTGACGGAAACGG 951187 Query 127279 CTATAGTCCAAGCGCCGAGGATAGCAACTGGTGCCGGCTATGATTAGCCTAGGTTTGAAT 127338 ||||||| || | ||||| | ||||||| ||||| | | || ||| Sbjct 951186 GCGTAGTCCAGCAAACGGGAGTAGCACGAGATGCCGGCAATGATGATCTGCGGACGGAAG 951127 Query 127339 AGATTGGCACTCT-CGGCAAGTTTGGCATAGTCGACGAGTCCAGTCTGAGGATCCACCTT 127397 ||||| || | || | ||| | ||||||| || || |||| || | ||| || Sbjct 951126 TTCTTGGCCGCCTTCCGCCAACTTGTCGTAGTCGATGATACCCGTCTCCGGGTTCACTTT 951067 Query 127398 GTACGGCATGCTTTCGAAAAAGAGTGATGTAGCGGACACGTT--------GCG----GAA 127445 |||||||||||| ||||| |||| ||||| || || | || ||| ||| Sbjct 951066 GTACGGCATGCTCTCGAAGAAGATCGATGTGGCCGATATCTTCTTGGTGGGCGTGAAGAA 951007 Query 127446 TCCGTGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGGTTT 127505 |||||||||| |||||| || ||||||||||| || |||||||| | | |||| || Sbjct 951006 ACCGTGCGTCAAGTGGCCGCCATCGGGCAGATCCAGACCCATGATGCGATCGTGGGGCCG 950947 Query 127506 AACGATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACACAC 127565 || || ||||| || || | |||||| || || ||||| || || ||| || Sbjct 950946 GCAGACGCCCGTGTAGACAGCCAGATTGGCCGGGGATCCGGAGTAAGGCTGCACATTAAC 950887 Query 127566 TCCCCA-TTCGGACTCGTTCAAATTGAAC-GCTCTGAGACATCGCTGCTGTGCTAGCAGT 127623 ||||| ||| || ||| || |||||| |||| | | | || ||||| || ||||| Sbjct 950886 GCCCCACTTCTCAC-CGTCCAGGTTGAACAGCTC-GCGTCCGCGTTGCTGGGCGAGCAGC 950829 Query 127624 TCGATGCGATCGATAAACTCGTTACCACCATAGTATC 127660 || ||||| ||||| ||||||| ||||| ||||||| Sbjct 950828 TCAATGCGGTCGATGTACTCGTTGCCACCGTAGTATC 950792 >seq1553 Length=5866729 Score = 170 bits (188), Expect = 3e-37 Identities = 321/464 (69%), Gaps = 16/464 (3%) Strand=Plus/Minus Query 70067 GGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGAC 70126 ||||||||||| || |||||||| |||||||||||||| | || | |||| | | Sbjct 1125040 GGCGATCTGGGCCCGGTGTACGGCTTCCAGTGGAGGCATTTCGGGGCGCAGTACGGCACC 1124981 Query 70127 TGCGA-GACAGACTATTCGGGTCAGGGTGTTGATCAATTGCAGACAA-TCATTGACACTC 70184 ||||| || | |||| || |||| | || || ||| | ||| | || ||||| Sbjct 1124980 TGCGACGATA-ACTACAGCGGCAAGGGCATCGACCAGCTGC-GCCAAGTGATCGACACCA 1124923 Query 70185 TCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCC--TGCAGATTT 70242 ||| || || || |||| | | ||| | |||| | |||||||| || | || Sbjct 1124922 TCAGGAATAAGCCCTCAGACCGACGCATCATCATGTCGGCTTGGAATCCGCTGGACAT-- 1124865 Query 70243 GCACCAA-ATGGCACTACCACCGTGTCACTGTTTGGCTCAGTTTTACTCGTACGAT---- 70297 | | || ||||| || || ||||| ||||| ||||| ||||||||| | ||| Sbjct 1124864 -CCCAAAGATGGCCCTGCCGCCGTGCCACTGCTTGGCGCAGTTTTACGTCTCCGAGAAGC 1124806 Query 70298 --GGCAAATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCT 70355 || | |||| ||| |||| ||||| || |||||||||||||| || ||||||| Sbjct 1124805 GCGGTGAGCTGTCGTGCCAGCTGTACCAGAGAAGCGCCGACATGGGCCTGGGCGTACCCT 1124746 Query 70356 TTAACATTGCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTACCGGCCTGAAAG 70415 ||||||| || ||| | || | || ||||||||||| || | || || ||||| Sbjct 1124745 TTAACATCGCCTCCTACGCCCTGCTCACCCACATGATTGCCCATGTGACGGGTCTGAAGC 1124686 Query 70416 CGCACGAGTTCGTACACACCATTGGCGACGCTCACGTGTATTTAAATCACATCGAGCCAT 70475 || ||| || || |||||||| ||||| | ||||| || | || ||| | ||||| Sbjct 1124685 CGGGCGACTTTGTTCACACCATGGGCGATACACACGTCTACCTGAACCACGTAGAGCCGC 1124626 Query 70476 TAAAGGTGCAACTCGAACGGGAGCCGAGACCTTTTCCCAAGCTG 70519 | |||| |||||| | || ||| |||| |||||||||||| Sbjct 1124625 TGAAGGAGCAACTGCAGCGCACACCGCGACCCTTTCCCAAGCTG 1124582 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740922743211560