Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18] 14,731 sequences; 166,592,095 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq1554 104 2e-17 seq1556 96.9 3e-15 >seq1554 Length=6179234 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || ||||||||||| || || || || |||||||| ||| ||| | | |||| || Sbjct 592527 ACCAAATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCCTCC 592468 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 || || || || ||| | |||||||| || || || || ||||| || ||||| Sbjct 592467 AACTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGG 592408 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || ||| ||| || | || ||||||||| || || || || || ||||| || Sbjct 592407 ATCTTGGCCTTGACGTTCTCGATGGTATCGGATGGCTCAACCTCCAAAGTGATGGTCTTG 592348 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 || |||||||| || || |||||||||||||| Sbjct 592347 CCGGTCAGAGTCTTAACGAAAATTTGCATATT 592316 >seq1556 Length=7591821 Score = 96.9 bits (106), Expect = 3e-15 Identities = 150/212 (71%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| ||||| ||||| || || || || |||||||||||| || | | ||||||| Sbjct 3893222 AACCAAATGGAGGGTTGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCGTCTTC 3893281 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 ||||| ||||||||| | |||| ||| || || || |||||||| || ||||| Sbjct 3893282 CAATTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCTTG 3893341 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTAT-TTTCTACATCTAAGGTAATGGTTT 15332 ||||| ||| ||| | || ||||| || | || || || || || || ||||| | Sbjct 3893342 GATTTTAGCCTTCACATTCTCAATGGTGTC-CGATGGCTCAACCTCCAAAGTGATGGTCT 3893400 Query 15333 TACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 | || || || || || || || || |||||| Sbjct 3893401 TGCCAGTGAGGGTCTTCACGAAGATCTGCATA 3893432 Score = 96.9 bits (106), Expect = 3e-15 Identities = 150/212 (71%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| ||||| ||||| || || || || |||||||||||| || | | ||||||| Sbjct 3893906 AACCAAATGGAGGGTTGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCGTCTTC 3893965 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 ||||| ||||||||| | |||| ||| || || || |||||||| || ||||| Sbjct 3893966 CAATTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCTTG 3894025 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTAT-TTTCTACATCTAAGGTAATGGTTT 15332 ||||| ||| ||| | || ||||| || | || || || || || || ||||| | Sbjct 3894026 GATTTTAGCCTTCACATTCTCAATGGTGTC-CGATGGCTCAACCTCCAAAGTGATGGTCT 3894084 Query 15333 TACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 | || || || || || || || || |||||| Sbjct 3894085 TGCCAGTGAGGGTCTTCACGAAGATCTGCATA 3894116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362114176496871