Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18] 14,731 sequences; 166,592,095 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq1558 95.1 1e-14 >seq1558 Length=21120651 Score = 95.1 bits (104), Expect = 1e-14 Identities = 222/330 (67%), Gaps = 5/330 (2%) Strand=Plus/Plus Query 20950 ATAATGCCGCAGCCCAGCCGGCCGCCCGAGTTGCCCGTAACCTTGCTAAGCGGGTGGTCT 21009 |||| ||||||||| | ||| | || | ||||||||| |||||| ||| ||| | Sbjct 3327926 ATAACGCCGCAGCCGATGCGGGCACCAGCGTTGCCCGTTGACTTGCTCAGCTCGTGTCCA 3327985 Query 21010 GTTAAGCCGAGGTCATCGCGATCCGTGTGCACTACCAAGCTACGACCCAATATGCTGAGC 21069 ||| || |||||| ||| | |||||| |||| | | || || | |||||| Sbjct 3327986 CCCTGGCCAAGATCATCGGCATCGGCGTGCACGACCACGGTGCGTCCGATGATGCTGTCG 3328045 Query 21070 GGACCAAACAAGCTCATCACGTTGTCGCTCATGTCGACAGGCGTCAGCGCGGTGCAGCCC 21129 | ||||| | | ||| |||| | |||| ||| || | || || ||| Sbjct 3328046 GCGCCAAAGAGCGTGATCTTCGAGTCGGTGATGTTGACCTTGGTGGG-GCAGTC--GCCG 3328102 Query 21130 GCGGAGCGGACGTTGCCCAGATCGCCGACGTGCCGCTCTGCGGCGTCGGGAGCGCCGTGA 21189 | || | ||||||||||||||| | ||| || | || || ||||||||||||| Sbjct 3328103 GTGGCCTCAATGTTGCCCAGATCGCCCAGGTGACGGTTCTCGTCGACGGGAGCGCCGTGC 3328162 Query 21190 TTTTGGTGCGTAGGG-TTAAAGTGCTCGCCGGCGGACGTGCAGCCGTTGCTGGTGTCGCC 21248 | | | | || || || ||||| |||| ||| ||||||||||| || |||| || Sbjct 3328163 TCCTTGC-CATACGGATTGAAGTGGGGTCCGGATGACATGCAGCCGTTGGTGTTGTCTCC 3328221 Query 21249 GAACTCGTGAACGTGAAAGCCGTGCAGTCC 21278 |||||||| ||||| || || ||||| || Sbjct 3328222 AAACTCGTGCACGTGGAATCCATGCAGACC 3328251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414498370061014