Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18] 14,731 sequences; 166,592,095 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq1554 93.3 3e-14 >seq1554 Length=6179234 Score = 93.3 bits (102), Expect = 3e-14 Identities = 154/221 (70%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 |||| |||||||| | |||||||| || || || ||||| || |||| | || || | Sbjct 592533 CGCAGGACCAAATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCG 592474 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || ||||| |||||||| || || ||||| ||||| || | ||| || || || || Sbjct 592473 TCCTCCAACTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTG 592414 Query 33275 TCGCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331 || ||| |||| | || | | || || ||| || | ||| |||| ||| Sbjct 592413 TCCTGGATCTTGGCCT---TGACGTTCTCGATGGTATCGGATGGCTCAACCTCCAAAGTG 592357 Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 || || || || || ||||| || |||||||||||||| || Sbjct 592356 ATGGTCTTGCCGGTCAGAGTCTTAACGAAAATTTGCATATT 592316 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318720368562438