Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18] 14,731 sequences; 166,592,095 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq1555 158 3e-33 seq1556 122 2e-22 seq1557 93.3 1e-13 >seq1555 Length=7220098 Score = 158 bits (174), Expect = 3e-33 Identities = 156/202 (77%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || |||||||| ||||||||||| || || | || ||||| || || || ||| Sbjct 5837914 GTGGACTCCTTCTGAATGTTATAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCA 5837855 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| ||||| ||||| ||||||||||| ||||||||||| ||||| Sbjct 5837854 GCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTGAATCTTGGCTTTG 5837795 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 |||||||| | ||||| ||||| ||||| || || || ||||| || || || || Sbjct 5837794 ACATTTTCGATAGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTTGCCCGTGAGGGTC 5837735 Query 104543 TTTACAAATATCTGCATTTTGT 104564 || || || |||||||| |||| Sbjct 5837734 TTAACGAAGATCTGCATCTTGT 5837713 >seq1556 Length=7591821 Score = 122 bits (134), Expect = 2e-22 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || || || || || || | || || || || || ||||| Sbjct 3894603 GTCGACTCCTTCTGGATGTTGTAATCCGACAGGGTGCGTCCATCCTCAAGCTGCTTTCCG 3894662 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| ||||| || || ||||| || |||||||||||||| || || Sbjct 3894663 GCGAAGATCAGACGCTGCTGATCTGGGGGAATTCCCTCCTTATCCTGAATCTTAGCCTTA 3894722 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | |||||| ||| |||||||| || || |||||||| || || | || Sbjct 3894723 ACATTCTCAATGGTATCAGAAGGCTCTACCTCGAGGGTGATAGTCTTTCCGGTCAAAGTC 3894782 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 3894783 TTCACGAAGATCTGCAT 3894799 Score = 120 bits (132), Expect = 7e-22 Identities = 147/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || || || || || || | || || || || || ||||| Sbjct 3895287 GTCGACTCCTTCTGGATGTTGTAATCCGACAGGGTGCGTCCATCCTCAAGCTGCTTTCCG 3895346 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| ||||| || || ||||| || |||||||||||||| || || Sbjct 3895347 GCGAAGATCAGACGCTGCTGATCTGGGGGAATTCCCTCCTTATCCTGAATCTTAGCCTTA 3895406 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| || || |||||||| || || || ||||| || || | || Sbjct 3895407 ACATTCTCAATGGTGTCAGACGGCTCTACCTCGAGGGTGATGGTCTTTCCGGTCAAGGTC 3895466 Query 104543 TTTACAAATATCTGCATTTTG 104563 || ||||| |||||||||||| Sbjct 3895467 TTCACAAAGATCTGCATTTTG 3895487 Score = 116 bits (128), Expect = 9e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || || || || || || | |||||||| ||||| || || Sbjct 3892779 GTCGACTCCTTCTGGATGTTGTAATCGGAAAGGGTGCGTCCGTCTTCCAGTTGCTTGCCG 3892838 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| ||||| || || ||||| || |||||||||||||| || || Sbjct 3892839 GCGAAGATGAGACGCTGCTGATCTGGGGGGATTCCCTCCTTATCCTGAATCTTAGCCTTC 3892898 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| || || || ||||| | || || ||||| ||||| || || Sbjct 3892899 ACATTCTCAATGGTGTCCGATGGCTCAACCTCCAAAGTGATGGTCTTGCCAGTGAGGGTC 3892958 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 3892959 TTCACGAAGATCTGCAT 3892975 Score = 116 bits (128), Expect = 9e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || || || || || || | |||||||| ||||| || || Sbjct 3893007 GTCGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCGTCTTCCAGTTGCTTGCCG 3893066 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| ||||| || | ||||| || |||||||||||||| || || Sbjct 3893067 GCGAAGATGAGACGCTGCTGATCTGGGGAGATTCCCTCCTTATCCTGAATCTTAGCCTTA 3893126 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| || ||||||||||| || || || ||||| || || | || Sbjct 3893127 ACATTCTCGATGGTGTCCGACGGTTCTACCTCAAGAGTGATGGTCTTTCCGGTCAAAGTC 3893186 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 3893187 TTCACGAAGATCTGCAT 3893203 Score = 116 bits (128), Expect = 9e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || || || || || || | |||||||| ||||| || || Sbjct 3893463 GTCGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCGTCTTCCAGTTGCTTGCCG 3893522 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| ||||| || || ||||| || |||||||||||||| || || Sbjct 3893523 GCGAAGATGAGACGCTGCTGATCTGGGGGGATTCCCTCCTTATCCTGAATCTTAGCCTTC 3893582 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| || || || ||||| | || || ||||| ||||| || || Sbjct 3893583 ACATTCTCAATGGTGTCCGATGGCTCAACCTCCAAAGTGATGGTCTTGCCAGTGAGGGTC 3893642 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 3893643 TTCACGAAGATCTGCAT 3893659 Score = 116 bits (128), Expect = 9e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || || || || || || | ||||| || |||||||| || Sbjct 3894831 GTCGACTCCTTCTGGATGTTGTAATCGGAAAGGGTGCGTCCGTCCTCCAGTTGTTTGCCG 3894890 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| ||||| || || ||||| || |||||||||||||| || || Sbjct 3894891 GCGAAGATGAGACGCTGCTGATCTGGGGGGATTCCCTCCTTATCCTGAATCTTAGCCTTC 3894950 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| || || || ||||| | || || ||||| ||||| || || Sbjct 3894951 ACATTCTCAATGGTGTCCGATGGCTCAACCTCCAAAGTGATGGTCTTGCCAGTGAGGGTC 3895010 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 3895011 TTCACGAAGATCTGCAT 3895027 Score = 113 bits (124), Expect = 1e-19 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || || || || || || | ||||| || ||||| || || Sbjct 3894147 GTCGACTCCTTCTGGATGTTGTAATCGGAAAGGGTGCGTCCGTCCTCCAGTTGCTTGCCG 3894206 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| ||||| || || ||||| || |||||||||||||| || || Sbjct 3894207 GCGAAGATGAGACGCTGCTGATCTGGGGGGATTCCCTCCTTATCCTGAATCTTAGCCTTC 3894266 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| || || || ||||| | || || ||||| ||||| || || Sbjct 3894267 ACATTCTCAATGGTGTCCGATGGCTCAACCTCCAAAGTGATGGTCTTGCCAGTGAGGGTC 3894326 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 3894327 TTCACGAAGATCTGCAT 3894343 Score = 107 bits (118), Expect = 4e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || || || || || || | ||||| || || || || || Sbjct 3893691 GTCGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCGTCCTCAAGCTGCTTGCCG 3893750 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| ||||| || || ||||| || |||||||||||||| || || Sbjct 3893751 GCGAAGATCAGACGCTGCTGATCTGGGGGGATTCCCTCCTTATCCTGAATCTTAGCCTTA 3893810 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| || ||||||||||| || | || ||||| || || | || Sbjct 3893811 ACATTCTCGATGGTGTCCGACGGTTCTACCTCAAGGTTGATGGTCTTTCCGGTCAAAGTC 3893870 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 3893871 TTCACGAAGATCTGCAT 3893887 >seq1557 Length=14215200 Score = 93.3 bits (102), Expect = 1e-13 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 268876 TGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGA 268935 |||||| ||||| ||||| || || || ||| ||| |||| ||||| ||||| | || Sbjct 5422363 TGATGGCATCGTAAACGAGAACCTGGTGGAGCGCTTCAGTCAGGAGGTGCAGATCACGGA 5422304 Query 268936 AGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAG 268995 || |||| || ||||| |||||||| || || || || | || || ||||||||||| Sbjct 5422303 GGCACGATGCTTCTACGGCTTCCAGATCGCCATGGAGAACGTGCACTCGGAGATGTACAG 5422244 Query 268996 TCTATTAATAGATACTTATAT 269016 | | || || || ||||| || Sbjct 5422243 TGTTTTGATCGACACTTACAT 5422223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151181083986548