Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18]
14,731 sequences; 166,592,095 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq1555 158 3e-33
seq1556 122 2e-22
seq1557 93.3 1e-13
>seq1555
Length=7220098
Score = 158 bits (174), Expect = 3e-33
Identities = 156/202 (77%), Gaps = 0/202 (0%)
Strand=Plus/Minus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || || |||||||| ||||||||||| || || | || ||||| || || || |||
Sbjct 5837914 GTGGACTCCTTCTGAATGTTATAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCA 5837855
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|| || || || | ||| ||||| ||||| ||||||||||| ||||||||||| |||||
Sbjct 5837854 GCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTGAATCTTGGCTTTG 5837795
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
|||||||| | ||||| ||||| ||||| || || || ||||| || || || ||
Sbjct 5837794 ACATTTTCGATAGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTTGCCCGTGAGGGTC 5837735
Query 104543 TTTACAAATATCTGCATTTTGT 104564
|| || || |||||||| ||||
Sbjct 5837734 TTAACGAAGATCTGCATCTTGT 5837713
>seq1556
Length=7591821
Score = 122 bits (134), Expect = 2e-22
Identities = 145/197 (74%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || || ||||| || || || || || || || | || || || || || |||||
Sbjct 3894603 GTCGACTCCTTCTGGATGTTGTAATCCGACAGGGTGCGTCCATCCTCAAGCTGCTTTCCG 3894662
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|| || || || | ||| ||||| || || ||||| || |||||||||||||| || ||
Sbjct 3894663 GCGAAGATCAGACGCTGCTGATCTGGGGGAATTCCCTCCTTATCCTGAATCTTAGCCTTA 3894722
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
||||| || | |||||| ||| |||||||| || || |||||||| || || | ||
Sbjct 3894723 ACATTCTCAATGGTATCAGAAGGCTCTACCTCGAGGGTGATAGTCTTTCCGGTCAAAGTC 3894782
Query 104543 TTTACAAATATCTGCAT 104559
|| || || ||||||||
Sbjct 3894783 TTCACGAAGATCTGCAT 3894799
Score = 120 bits (132), Expect = 7e-22
Identities = 147/201 (73%), Gaps = 0/201 (0%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || || ||||| || || || || || || || | || || || || || |||||
Sbjct 3895287 GTCGACTCCTTCTGGATGTTGTAATCCGACAGGGTGCGTCCATCCTCAAGCTGCTTTCCG 3895346
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|| || || || | ||| ||||| || || ||||| || |||||||||||||| || ||
Sbjct 3895347 GCGAAGATCAGACGCTGCTGATCTGGGGGAATTCCCTCCTTATCCTGAATCTTAGCCTTA 3895406
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
||||| || | ||| || || |||||||| || || || ||||| || || | ||
Sbjct 3895407 ACATTCTCAATGGTGTCAGACGGCTCTACCTCGAGGGTGATGGTCTTTCCGGTCAAGGTC 3895466
Query 104543 TTTACAAATATCTGCATTTTG 104563
|| ||||| ||||||||||||
Sbjct 3895467 TTCACAAAGATCTGCATTTTG 3895487
Score = 116 bits (128), Expect = 9e-21
Identities = 144/197 (73%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || || ||||| || || || || || || || | |||||||| ||||| || ||
Sbjct 3892779 GTCGACTCCTTCTGGATGTTGTAATCGGAAAGGGTGCGTCCGTCTTCCAGTTGCTTGCCG 3892838
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|| || || || | ||| ||||| || || ||||| || |||||||||||||| || ||
Sbjct 3892839 GCGAAGATGAGACGCTGCTGATCTGGGGGGATTCCCTCCTTATCCTGAATCTTAGCCTTC 3892898
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
||||| || | ||| || || || ||||| | || || ||||| ||||| || ||
Sbjct 3892899 ACATTCTCAATGGTGTCCGATGGCTCAACCTCCAAAGTGATGGTCTTGCCAGTGAGGGTC 3892958
Query 104543 TTTACAAATATCTGCAT 104559
|| || || ||||||||
Sbjct 3892959 TTCACGAAGATCTGCAT 3892975
Score = 116 bits (128), Expect = 9e-21
Identities = 144/197 (73%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || || ||||| || || || || || || || | |||||||| ||||| || ||
Sbjct 3893007 GTCGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCGTCTTCCAGTTGCTTGCCG 3893066
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|| || || || | ||| ||||| || | ||||| || |||||||||||||| || ||
Sbjct 3893067 GCGAAGATGAGACGCTGCTGATCTGGGGAGATTCCCTCCTTATCCTGAATCTTAGCCTTA 3893126
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
||||| || | ||| || ||||||||||| || || || ||||| || || | ||
Sbjct 3893127 ACATTCTCGATGGTGTCCGACGGTTCTACCTCAAGAGTGATGGTCTTTCCGGTCAAAGTC 3893186
Query 104543 TTTACAAATATCTGCAT 104559
|| || || ||||||||
Sbjct 3893187 TTCACGAAGATCTGCAT 3893203
Score = 116 bits (128), Expect = 9e-21
Identities = 144/197 (73%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || || ||||| || || || || || || || | |||||||| ||||| || ||
Sbjct 3893463 GTCGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCGTCTTCCAGTTGCTTGCCG 3893522
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|| || || || | ||| ||||| || || ||||| || |||||||||||||| || ||
Sbjct 3893523 GCGAAGATGAGACGCTGCTGATCTGGGGGGATTCCCTCCTTATCCTGAATCTTAGCCTTC 3893582
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
||||| || | ||| || || || ||||| | || || ||||| ||||| || ||
Sbjct 3893583 ACATTCTCAATGGTGTCCGATGGCTCAACCTCCAAAGTGATGGTCTTGCCAGTGAGGGTC 3893642
Query 104543 TTTACAAATATCTGCAT 104559
|| || || ||||||||
Sbjct 3893643 TTCACGAAGATCTGCAT 3893659
Score = 116 bits (128), Expect = 9e-21
Identities = 144/197 (73%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || || ||||| || || || || || || || | ||||| || |||||||| ||
Sbjct 3894831 GTCGACTCCTTCTGGATGTTGTAATCGGAAAGGGTGCGTCCGTCCTCCAGTTGTTTGCCG 3894890
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|| || || || | ||| ||||| || || ||||| || |||||||||||||| || ||
Sbjct 3894891 GCGAAGATGAGACGCTGCTGATCTGGGGGGATTCCCTCCTTATCCTGAATCTTAGCCTTC 3894950
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
||||| || | ||| || || || ||||| | || || ||||| ||||| || ||
Sbjct 3894951 ACATTCTCAATGGTGTCCGATGGCTCAACCTCCAAAGTGATGGTCTTGCCAGTGAGGGTC 3895010
Query 104543 TTTACAAATATCTGCAT 104559
|| || || ||||||||
Sbjct 3895011 TTCACGAAGATCTGCAT 3895027
Score = 113 bits (124), Expect = 1e-19
Identities = 143/197 (73%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || || ||||| || || || || || || || | ||||| || ||||| || ||
Sbjct 3894147 GTCGACTCCTTCTGGATGTTGTAATCGGAAAGGGTGCGTCCGTCCTCCAGTTGCTTGCCG 3894206
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|| || || || | ||| ||||| || || ||||| || |||||||||||||| || ||
Sbjct 3894207 GCGAAGATGAGACGCTGCTGATCTGGGGGGATTCCCTCCTTATCCTGAATCTTAGCCTTC 3894266
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
||||| || | ||| || || || ||||| | || || ||||| ||||| || ||
Sbjct 3894267 ACATTCTCAATGGTGTCCGATGGCTCAACCTCCAAAGTGATGGTCTTGCCAGTGAGGGTC 3894326
Query 104543 TTTACAAATATCTGCAT 104559
|| || || ||||||||
Sbjct 3894327 TTCACGAAGATCTGCAT 3894343
Score = 107 bits (118), Expect = 4e-18
Identities = 142/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || || ||||| || || || || || || || | ||||| || || || || ||
Sbjct 3893691 GTCGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCGTCCTCAAGCTGCTTGCCG 3893750
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|| || || || | ||| ||||| || || ||||| || |||||||||||||| || ||
Sbjct 3893751 GCGAAGATCAGACGCTGCTGATCTGGGGGGATTCCCTCCTTATCCTGAATCTTAGCCTTA 3893810
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
||||| || | ||| || ||||||||||| || | || ||||| || || | ||
Sbjct 3893811 ACATTCTCGATGGTGTCCGACGGTTCTACCTCAAGGTTGATGGTCTTTCCGGTCAAAGTC 3893870
Query 104543 TTTACAAATATCTGCAT 104559
|| || || ||||||||
Sbjct 3893871 TTCACGAAGATCTGCAT 3893887
>seq1557
Length=14215200
Score = 93.3 bits (102), Expect = 1e-13
Identities = 105/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 268876 TGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGA 268935
|||||| ||||| ||||| || || || ||| ||| |||| ||||| ||||| | ||
Sbjct 5422363 TGATGGCATCGTAAACGAGAACCTGGTGGAGCGCTTCAGTCAGGAGGTGCAGATCACGGA 5422304
Query 268936 AGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAG 268995
|| |||| || ||||| |||||||| || || || || | || || |||||||||||
Sbjct 5422303 GGCACGATGCTTCTACGGCTTCCAGATCGCCATGGAGAACGTGCACTCGGAGATGTACAG 5422244
Query 268996 TCTATTAATAGATACTTATAT 269016
| | || || || ||||| ||
Sbjct 5422243 TGTTTTGATCGACACTTACAT 5422223
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151181083986548
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |