Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18] 14,731 sequences; 166,592,095 total letters Query= NC_005336.1 Length=139962 Score E Sequences producing significant alignments: (Bits) Value seq1555 122 8e-23 >seq1555 Length=7220098 Score = 122 bits (134), Expect = 8e-23 Identities = 181/254 (71%), Gaps = 2/254 (1%) Strand=Plus/Minus Query 5239 TCCGGTAGAACCGAATCCAGAGTCGCCGCGGTCGGTGTCGTCCAAGCGGTTAACC-TCTT 5297 |||||| ||||||||||| | |||||||| || ||||| |||| || ||| || Sbjct 6413321 TCCGGTGGAACCGAATCCGGCCTCGCCGCGCTCTGTGTCCTCCAGTTTGTCCACCATCAC 6413262 Query 5298 GAACTGCTGGGTGCGATATGCGTTCGCATATTAGCTGAGCTATCCTGTCTCCCTTCTTAA 5357 | ||| || | | ||||| ||||| || | ||| || || | ||| || | ||| | Sbjct 6413261 CAGTTGC-GGATAGAAGATGCGCTCGCAAATAAACTGGGCGATGCGGTCGCCATGCTTCA 6413203 Query 5358 CCTCAAAGTCGCTGTTTCCGAAGTTAAACAGCACCACCCCGACATTGCCTCGGTAGTCTT 5417 ||||||| || | | | || ||||| || || |||| |||||| || || || | Sbjct 6413202 CCTCAAAATCAACATCTGAGTGATTGAACAGGACGACGCCGAGATTGCCGCGATAATCCT 6413143 Query 5418 CGTCGATAACGCCAGCGCCCACGTCGATAAAGTGTTTGACCGCAAGGCCGGAACGTGGTG 5477 |||||| || || |||||||| || || |||| || || || || ||||| ||||| | Sbjct 6413142 CGTCGACCACACCGGCGCCCACATCAATGAAGTTCTTCACTGCTAGCCCGGATCGTGGGG 6413083 Query 5478 CTATGCGTCCGTAG 5491 ||| |||||||||| Sbjct 6413082 CTACGCGTCCGTAG 6413069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447667952360720