Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18]
14,731 sequences; 166,592,095 total letters
Query= NC_005839.2
Length=131680
Score E
Sequences producing significant alignments: (Bits) Value
seq1554 102 7e-17
seq1553 93.3 4e-14
seq1556 91.5 1e-13
>seq1554
Length=6179234
Score = 102 bits (112), Expect = 7e-17
Identities = 150/210 (71%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTC 48576
|| |||||||| || |||||| || |||||||| || | || | || || |||||||
Sbjct 592527 ACCAAATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTG-CGTCCGTCCTC 592469
Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636
|| |||||| ||| || | || |||||||||||||| || | | |||||||||
Sbjct 592468 CAACTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTG 592409
Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696
|| || ||||| | | |||||||||| | ||| ||| | || ||||| ||
Sbjct 592408 GATCTTGGCCTTGACGTTCTCGATGGTATCGGATGGCTCAACCTCCAAAGTGATGGTCTT 592349
Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
||||| ||||| || || ||||| |||||
Sbjct 592348 GCCGGTCAGAGTCTTAACGAAAATTTGCAT 592319
Score = 102 bits (112), Expect = 7e-17
Identities = 161/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559
|| ||||||| | | || || ||||| || |||||| || |||||||| || | |
Sbjct 592773 CCACCGCGCAGACGCAGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 592714
Query 48560 A-ATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618
| | || || |||||||||||||||| ||| || | || |||||||||||||| ||
Sbjct 592713 AGAGTG-CGTCCGTCCTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGG 592655
Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678
| | |||||||||| || || ||||| | | |||||||||| | |||
Sbjct 592654 GATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTATCGGATGGCTCAAC 592595
Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
|| | || ||||| || || || ||||| ||||| || ||||||||
Sbjct 592594 TTCCAAGGTGATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCAT 592547
Score = 102 bits (112), Expect = 7e-17
Identities = 161/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559
|| ||||||| | | || || ||||| || |||||| || |||||||| || | |
Sbjct 593229 CCACCGCGCAGACGCAGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 593170
Query 48560 A-ATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618
| | || || |||||||||||||||| ||| || | || |||||||||||||| ||
Sbjct 593169 AGAGTG-CGTCCGTCCTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGG 593111
Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678
| | ||||||||| || || ||||| | | | |||||||||| | |||
Sbjct 593110 GATTCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTATCGGATGGCTCAAC 593051
Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
|| | || ||||| || || || ||||| ||||| || ||||||||
Sbjct 593050 TTCCAAGGTGATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCAT 593003
Score = 98.7 bits (108), Expect = 8e-16
Identities = 160/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559
|| ||||||| | | || || ||||| || |||||| || |||||||| || | |
Sbjct 593001 CCACCGCGCAGACGCAGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 592942
Query 48560 A-ATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618
| | || || |||||||||||||||| ||| || | || |||||||||||||| ||
Sbjct 592941 AGAGTG-CGTCCGTCCTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGG 592883
Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678
| | ||||||||| || || ||||| | | |||||||||| | |||
Sbjct 592882 GATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTATCGGATGGCTCAAC 592823
Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
|| | || ||||| || || || ||||| ||||| || ||||||||
Sbjct 592822 TTCCAAGGTGATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCAT 592775
>seq1553
Length=5866729
Score = 93.3 bits (102), Expect = 4e-14
Identities = 162/233 (70%), Gaps = 2/233 (1%)
Strand=Plus/Minus
Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558
||| || |||| | | ||| || || || || |||||| || |||||||| || |
Sbjct 2325486 ACCACCACGCAGGCGGAGCACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGA 2325427
Query 48559 CA-ATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617
| | || || | |||||||||||||| || || | || | |||||||||||| |
Sbjct 2325426 AAGAGTGCGGC-CATCCTCCAGCTGCTTGCCCGCGAAGATCAGACGCTGCTGATCTGGGG 2325368
Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCG 48677
| | | ||||| ||| || || ||||| | | | ||||| || | || ||||
Sbjct 2325367 GAATGCCCTCCTTATCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCAGAAGGCTCCA 2325308
Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTG 48730
||| | || ||||| || |||||||| |||||||| || |||||||| |||
Sbjct 2325307 CCTCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTCACGAAGATCTGCATAGTG 2325255
>seq1556
Length=7591821
Score = 91.5 bits (100), Expect = 1e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558
|||||| |||| | | || || ||||| || |||||| || ||||||||||| |
Sbjct 3894572 ACCTCCTCGCAGACGCAGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGA 3894631
Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618
|| || | ||||| |||||||| ||| || | || | |||||||||||| ||
Sbjct 3894632 CAGGGTGCGTCCATCCTCAAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCTGGGGG 3894691
Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678
| | ||||| ||| ||| || ||| | | | | |||||||| | || |||
Sbjct 3894692 AATTCCCTCCTTATCCTGAATCTTAGCCTTAACATTCTCAATGGTATCAGAAGGCTCTAC 3894751
Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
||||| || || || || ||||| | ||| ||||| || ||||||||
Sbjct 3894752 CTCGAGGGTGATAGTCTTTCCGGTCAAAGTCTTCACGAAGATCTGCAT 3894799
Score = 87.8 bits (96), Expect = 2e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558
|||||| |||| | | || || ||||| || |||||| || ||||||||||| |
Sbjct 3895256 ACCTCCTCGCAGACGCAGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGA 3895315
Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618
|| || | ||||| |||||||| ||| || | || | |||||||||||| ||
Sbjct 3895316 CAGGGTGCGTCCATCCTCAAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCTGGGGG 3895375
Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678
| | ||||| ||| ||| || ||| | | | | ||||| || | | |||
Sbjct 3895376 AATTCCCTCCTTATCCTGAATCTTAGCCTTAACATTCTCAATGGTGTCAGACGGCTCTAC 3895435
Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
||||| || ||||| || ||||| | || |||||||| ||||||||
Sbjct 3895436 CTCGAGGGTGATGGTCTTTCCGGTCAAGGTCTTCACAAAGATCTGCAT 3895483
Score = 84.2 bits (92), Expect = 2e-11
Identities = 146/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTC 48576
|| || ||||| || |||||| || ||||||||||| | || || || |||||||
Sbjct 3894135 ACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATC-GGAAAGGGTGCGTCCGTCCTC 3894193
Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636
||| ||||| ||| || | || | |||||||||||| || | | ||||| |||
Sbjct 3894194 CAGTTGCTTGCCGGCGAAGATGAGACGCTGCTGATCTGGGGGGATTCCCTCCTTATCCTG 3894253
Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696
||| || ||| | | | | ||||| || | | ||| ||| | || ||||| ||
Sbjct 3894254 AATCTTAGCCTTCACATTCTCAATGGTGTCCGATGGCTCAACCTCCAAAGTGATGGTCTT 3894313
Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
|| ||||| || ||||| || ||||||||
Sbjct 3894314 GCCAGTGAGGGTCTTCACGAAGATCTGCAT 3894343
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 421175571060731
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |