Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18]
14,731 sequences; 166,592,095 total letters
Query= NC_005906.1
Length=81755
Score E
Sequences producing significant alignments: (Bits) Value
seq1557 129 3e-25
seq1243 127 1e-24
seq1550 118 6e-22
seq1532 113 2e-20
>seq1557
Length=14215200
Score = 129 bits (142), Expect = 3e-25
Identities = 82/90 (91%), Gaps = 0/90 (0%)
Strand=Plus/Minus
Query 11440 TAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499
||| ||||||| || ||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 6836908 TAAAAAAAAATTAATTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCA 6836849
Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCC 11529
||||||||| ||||||||||||||||||||
Sbjct 6836848 CGACGCTCTAACCAACTGAGCTAATGGGCC 6836819
Score = 122 bits (134), Expect = 5e-23
Identities = 82/91 (90%), Gaps = 1/91 (1%)
Strand=Plus/Minus
Query 11444 AAAAAATCAA-ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502
||||||| | |||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 1686116 AAAAAATGAGGATTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGA 1686057
Query 11503 CGCTCTRACCAACTGAGCTAATGGGCCGTCG 11533
|||||| |||||||||||||||||||| |||
Sbjct 1686056 CGCTCTAACCAACTGAGCTAATGGGCCTTCG 1686026
Score = 120 bits (132), Expect = 2e-22
Identities = 84/95 (88%), Gaps = 1/95 (1%)
Strand=Plus/Minus
Query 11437 AATTAATAAAAAA-TCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATT 11495
||| || |||||| | ||||||||||||| |||||||||| ||||||||||||||||
Sbjct 6844587 AATAAAAAAAAAAGTGGAATTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATT 6844528
Query 11496 AGCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530
||||||||||||| |||| ||||||||||||||||
Sbjct 6844527 AGCACGACGCTCTAACCAGCTGAGCTAATGGGCCG 6844493
Score = 113 bits (124), Expect = 2e-20
Identities = 69/74 (93%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
|||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 6837672 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 6837613
Query 11516 TGAGCTAATGGGCC 11529
||||||||||||||
Sbjct 6837612 TGAGCTAATGGGCC 6837599
Score = 111 bits (122), Expect = 8e-20
Identities = 69/75 (92%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514
||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 6837224 TTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAG 6837165
Query 11515 CTGAGCTAATGGGCC 11529
|||||||||||||||
Sbjct 6837164 CTGAGCTAATGGGCC 6837150
Score = 109 bits (120), Expect = 3e-19
Identities = 70/77 (91%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512
|| |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 6836131 AACTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACC 6836190
Query 11513 AACTGAGCTAATGGGCC 11529
| |||||||||||||||
Sbjct 6836191 AGCTGAGCTAATGGGCC 6836207
Score = 109 bits (120), Expect = 3e-19
Identities = 68/74 (92%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
|||||||||| |||||||||| ||||||||||||||||||||||||||||| |||| |
Sbjct 6837990 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 6837931
Query 11516 TGAGCTAATGGGCC 11529
||||||||||||||
Sbjct 6837930 TGAGCTAATGGGCC 6837917
>seq1243
Length=15450
Score = 127 bits (140), Expect = 1e-24
Identities = 102/121 (84%), Gaps = 6/121 (5%)
Strand=Plus/Minus
Query 11430 AATATAGAAT-TAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCG 11488
|||| | ||| ||| ||||||||| |||||||||| |||||||||| |||||||||
Sbjct 12768 AATAGACAATATAAAAAAAAATCA---TGGCCCATGAGGGGATCGAACCCGCGACCTTCG 12712
Query 11489 CGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC--GTCGACGATTGTGATTT 11546
|||||||||||||||||||| |||||||||||||||||||| | |||||| | | |||
Sbjct 12711 CGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCCTTGGTGACGATGGGGCTTT 12652
Query 11547 T 11547
|
Sbjct 12651 T 12651
>seq1550
Length=3762037
Score = 118 bits (130), Expect = 6e-22
Identities = 73/79 (92%), Gaps = 0/79 (0%)
Strand=Plus/Plus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
|||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 3408928 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 3408987
Query 11516 TGAGCTAATGGGCCGTCGA 11534
|||||||||||||||| ||
Sbjct 3408988 TGAGCTAATGGGCCGTTGA 3409006
>seq1532
Length=826190
Score = 113 bits (124), Expect = 2e-20
Identities = 69/74 (93%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
|||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 694893 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 694834
Query 11516 TGAGCTAATGGGCC 11529
||||||||||||||
Sbjct 694833 TGAGCTAATGGGCC 694820
Lambda K H
0.638 0.409 0.919
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 261444253422556
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |