Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18] 14,731 sequences; 166,592,095 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq1557 129 3e-25 seq1243 127 1e-24 seq1550 118 6e-22 seq1532 113 2e-20 >seq1557 Length=14215200 Score = 129 bits (142), Expect = 3e-25 Identities = 82/90 (91%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 11440 TAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 ||| ||||||| || ||||||||||| |||||||||| |||||||||||||||||||| Sbjct 6836908 TAAAAAAAAATTAATTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCA 6836849 Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||| |||||||||||||||||||| Sbjct 6836848 CGACGCTCTAACCAACTGAGCTAATGGGCC 6836819 Score = 122 bits (134), Expect = 5e-23 Identities = 82/91 (90%), Gaps = 1/91 (1%) Strand=Plus/Minus Query 11444 AAAAAATCAA-ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 ||||||| | |||||||||||| |||||||||| ||||||||||||||||||||||| Sbjct 1686116 AAAAAATGAGGATTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGA 1686057 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCCGTCG 11533 |||||| |||||||||||||||||||| ||| Sbjct 1686056 CGCTCTAACCAACTGAGCTAATGGGCCTTCG 1686026 Score = 120 bits (132), Expect = 2e-22 Identities = 84/95 (88%), Gaps = 1/95 (1%) Strand=Plus/Minus Query 11437 AATTAATAAAAAA-TCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATT 11495 ||| || |||||| | ||||||||||||| |||||||||| |||||||||||||||| Sbjct 6844587 AATAAAAAAAAAAGTGGAATTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATT 6844528 Query 11496 AGCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||||||||||| |||| |||||||||||||||| Sbjct 6844527 AGCACGACGCTCTAACCAGCTGAGCTAATGGGCCG 6844493 Score = 113 bits (124), Expect = 2e-20 Identities = 69/74 (93%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 6837672 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 6837613 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 6837612 TGAGCTAATGGGCC 6837599 Score = 111 bits (122), Expect = 8e-20 Identities = 69/75 (92%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||| Sbjct 6837224 TTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAG 6837165 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||||||||| Sbjct 6837164 CTGAGCTAATGGGCC 6837150 Score = 109 bits (120), Expect = 3e-19 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 || |||||||||| |||||||||| ||||||||||||||||||||||||||||| ||| Sbjct 6836131 AACTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACC 6836190 Query 11513 AACTGAGCTAATGGGCC 11529 | ||||||||||||||| Sbjct 6836191 AGCTGAGCTAATGGGCC 6836207 Score = 109 bits (120), Expect = 3e-19 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 6837990 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 6837931 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 6837930 TGAGCTAATGGGCC 6837917 >seq1243 Length=15450 Score = 127 bits (140), Expect = 1e-24 Identities = 102/121 (84%), Gaps = 6/121 (5%) Strand=Plus/Minus Query 11430 AATATAGAAT-TAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCG 11488 |||| | ||| ||| ||||||||| |||||||||| |||||||||| ||||||||| Sbjct 12768 AATAGACAATATAAAAAAAAATCA---TGGCCCATGAGGGGATCGAACCCGCGACCTTCG 12712 Query 11489 CGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC--GTCGACGATTGTGATTT 11546 |||||||||||||||||||| |||||||||||||||||||| | |||||| | | ||| Sbjct 12711 CGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCCTTGGTGACGATGGGGCTTT 12652 Query 11547 T 11547 | Sbjct 12651 T 12651 >seq1550 Length=3762037 Score = 118 bits (130), Expect = 6e-22 Identities = 73/79 (92%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 3408928 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 3408987 Query 11516 TGAGCTAATGGGCCGTCGA 11534 |||||||||||||||| || Sbjct 3408988 TGAGCTAATGGGCCGTTGA 3409006 >seq1532 Length=826190 Score = 113 bits (124), Expect = 2e-20 Identities = 69/74 (93%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 694893 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 694834 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 694833 TGAGCTAATGGGCC 694820 Lambda K H 0.638 0.409 0.919 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261444253422556