Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18]
14,731 sequences; 166,592,095 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq1555 291 1e-73
seq1557 179 5e-40
>seq1555
Length=7220098
Score = 291 bits (322), Expect = 1e-73
Identities = 1201/1884 (64%), Gaps = 30/1884 (2%)
Strand=Plus/Plus
Query 61985 CTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCC 62044
||||| || ||||| ||||||| | | || || || || || ||||||||||||||
Sbjct 5750470 CTTGTTCACGGTGAACTGAATGGCATTCGCAGCTGGCTTGGTGCGCAGATAGTACATTCC 5750529
Query 62045 CGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGG 62104
||||| ||||| |||| |||||| || || || || || ||| | ||
Sbjct 5750530 GGTTTTAAGACCTGCTTTCCAGGAGTAAAAGTGTATGGAAGTCAGCTTTCCATAGTTTGG 5750589
Query 62105 ATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGC 62164
|| || | ||| || || | || ||||| ||||| ||||| || || | || || ||
Sbjct 5750590 CTCGGCCACATGTATGTTGAACGACTGACTCTGATCTATGAACGCACCACGATCGGCGGC 5750649
Query 62165 CATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAA---CTCGCTTAAT 62221
|||||| || | | ||| || |||||||| | || ||||| | |||||
Sbjct 5750650 CATTTTAATCGTGGACTTGACTGAGATTTCCCACACCGTCTTATACAGATCTCGC----- 5750704
Query 62222 ATCTTCTGG---AAGGTTTGTAT--TCTGAATGGATCCACCATCTGCC-ATAATCCTATT 62275
| ||||||| | ||| | || | ||||| ||||| || ||| || ||| ||
Sbjct 5750705 ACCTTCTGGGGGATGGTCTCAATGTTTTGAATCGATCC-CCTGCTGGATATGATCTGGTT 5750763
Query 62276 CTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAAC 62335
||| || || || | ||| || | |||||||| | | | | ||| | || ||
Sbjct 5750764 CTTCATGTCGTCGTCCCACAAGTCCAGCTCGGTTAGGTCGCGCAACAAATGATGGTTGAC 5750823
Query 62336 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 62395
|| || ||||| || |||| |||| ||| ||||| || || |||| || || || |
Sbjct 5750824 CACCTGGAATTCGCCGGACAGAACTCGCCGGGTGTATATGTTCGTGGTGTAGGGCTCGAA 5750883
Query 62396 CGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 62455
|| ||||| || |||| || ||||| || |||||||| ||||| || || || | |
Sbjct 5750884 GGATTCATTGTTGCCCATTATCTGAGCCGTAGATGCAGTGGGCATGGGAGCAACGAGCAG 5750943
Query 62456 ACTATTTCTAAGACCGTATGTTCTGATTTTA-TCTTTTAGAGGTTCCCAATTCCAAAGAT 62514
|| | | ||||| |||| | | | || || | | ||| | ||| || |
Sbjct 5750944 GGAGTTCCGGACACCGTGC-TTCTTAATGGACTCCTTCAATTTCTGCCAGTCCCACAGGT 5751002
Query 62515 CCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCCT 62573
|| || || || | ||| || || || | | | |||
Sbjct 5751003 TCGTTGGCACCTTGTCCCACATGTCGTACTGCAAAATTCCTTTGCTCACCGGGCTGCCCT 5751062
Query 62574 ACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCG 62633
| || || ||||||| ||||| ||| || ||||| || || || || || || ||
Sbjct 5751063 -CGTAGGTTTCGTATGCACCTTCGGTCTGGGCCAGTTCGCAGCTGGCTTCCAAGGCGCCA 5751121
Query 62634 TAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGA 62693
|| |||||||||||||| |||| || ||| | | ||||| ||| || | ||
Sbjct 5751122 TAGTAAATGGTTTCGAATATCTGCTGATTCAAAAGACCGGCTTCTTCGCTTTCGTACGGG 5751181
Query 62694 TAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGT 62753
|| | |||||| || || || || ||||| |||| |||||| || | || | ||
Sbjct 5751182 AAACGCATGAGAATCAAGGCATCAGCGAATCCCTGAATACCAATGCCCACGGGACGGTGC 5751241
Query 62754 CTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTG 62813
||| ||| || | || || || | |||||||| || ||||| || || || ||
Sbjct 5751242 CTCAAATTGGACTTCCTTGCCTCCGGCAGGGGATAATAGTTGATATCAATTATCTTGTTT 5751301
Query 62814 AGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCT 62873
|||||| || || || ||| || ||||| || || ||||||| | || | |||
Sbjct 5751302 AGATTTTTGGTAACTATCTTGGTGACTTCCTTGAGCTTCTTAAAATCATA-CGTCT-TCT 5751359
Query 62874 A-----TTACAAACATGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAG 62928
| || |||||||| | ||| | || |||| || || || || | ||||| |
Sbjct 5751360 CCGGCGTGACGAACATGTTGAGGGCGATGGAGGCCAAGTTGCAGACTGCAATCTCATCCG 5751419
Query 62929 CATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTT 62988
| ||||| | || || ||||| | || || |||||||| || || | ||| |
Sbjct 5751420 GTGAGGAATATTCAACGATTTCCGTGCACAAGTTGCTGCACTTGATGGTGCCCACATTCT 5751479
Query 62989 GTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAA 63048
| || || ||||| |||| || || ||||| | || ||| | ||| | || || || |
Sbjct 5751480 GCTGGTTGCTCTTCCTGTTGCAAGCGTCCTTGAAGAGCATGTACGGATTTCCGGTCTCCA 5751539
Query 63049 TCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCC 63108
|| | || || || || ||| | | | ||||||| | | ||| | |
Sbjct 5751540 CTTGCGCCTCAATGATGGCAAACCACAGGGATTGAGCCTTAACCGTTCGGTTGGCCCGAC 5751599
Query 63109 TTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATC 63168
||| |||||| |||| |||||| || || ||||| || | || | |
Sbjct 5751600 CCTCTTGCTCGTATTTCTCGTACAGCTTTTCGAATTCATCGCCCCACACTTCGTGGAGAC 5751659
Query 63169 CAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAA 63228
||||||| | | || ||||| | |||||| || |||| ||| || |||||||| |
Sbjct 5751660 CAGGACACTTGTGGGGGCACATGAGCGACCAATCACCGTTGGCCTCAACGCGTTTCATGA 5751719
Query 63229 AGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTG 63288
||||||| || ||||| || || ||| ||||| | | | || || || || || |
Sbjct 5751720 AGAGATCGGGTATCCACAGGGCGTAAAACAGATCGCGTGCGCGATTCTCTTCTTTGCCCG 5751779
Query 63289 TATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGG 63348
| ||||| || || || |||||| | | | ||| || ||||| |||||||| || ||||
Sbjct 5751780 TGTTCTTCTTCAGTTCCAGGAACTCAAAGACATCCGAGTGCCAGGGTTCCAAATAAATGG 5751839
Query 63349 CCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAA 63408
| | | || || || ||| ||||||||||| | || | || ||||| | |
Sbjct 5751840 CAAAGGCACCGGGACGCTTGCCGCCTCCCTGATCCACATAACGTGCCACATTATTGAAGA 5751899
Query 63409 CTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCAC 63468
| |||| ||| |||| | || || || ||||||| || ||| | || || | ||
Sbjct 5751900 CCCTCAGCATGGGAACCAACCCATTGGAAGTACCATTTGTGCCGCAAATCGAGGTGCCCT 5751959
Query 63469 TGGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGC 63526
| |||||||| | | | ||| || || || || || || || ||||| | ||
Sbjct 5751960 TTGCACGAATGCAATGCACGTTG--AGTCCGATGCCACCGGCGGACTTGGAGATCATGGC 5752017
Query 63527 GCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAA 63586
|||| ||| | | | | || ||||| ||| || | ||||| | || || ||
Sbjct 5752018 GCATTGTTCCACAGACTTGAAAATGCCCTCGATGGAGTCGGCTGTCATGGTCAGAAGGAA 5752077
Query 63587 ACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGT 63646
||| |||| || | || | || | || ||| | || || || || |||||
Sbjct 5752078 ACACGACGACAACTGCGGCCGGTTTGTGGCAGCGGCAAACAGTGTGGGCGATGCATGCGT 5752137
Query 63647 AAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATG 63706
|| | || || || ||||| || || || | || | || |||||| | |||
Sbjct 5752138 GAAGTAGCGCTCCGACAGAAGATTATAGGTTTCCACGGCCGCATCGATATCCTCTCCATG 5752197
Query 63707 AATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTAT 63766
||||| | || || ||||| | ||| ||||| |||| || ||||||| |||| |
Sbjct 5752198 GATTCCGATCGCAACGCGCATCAGCATATGCTGCGGTCGCTCTGCGATCTTTCCGTTTCT 5752257
Query 63767 TTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCG 63826
|| | | ||||| |||| || || || ||||||||||| || |||||| ||
Sbjct 5752258 CTTGAGAAGATAGGAACGCTCCAGCGTCTTGAAGCCAAAATAGTTATAGCCAAAGTCACG 5752317
Query 63827 TTCGTAAATAATAACCGAGTTGAG 63850
|| || || || |||||| ||
Sbjct 5752318 ATCATAGATTATGGACGAGTTCAG 5752341
>seq1557
Length=14215200
Score = 179 bits (198), Expect = 5e-40
Identities = 483/734 (66%), Gaps = 11/734 (1%)
Strand=Plus/Plus
Query 33004 ACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAAT 33063
|||||||| ||||| || |||| || |||||||| || || ||||| ||||
Sbjct 5421653 ACTCCCATGCGCTGGTACTCCGCCACCTTCTTCTCGAAAAAGTTGGTCTTTCCGTCCAGC 5421712
Query 33064 GATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAAT 33123
||||| | |||||||| | ||| || || | || || || ||| || |||||
Sbjct 5421713 GATATCATCTCCATGAAGTTAAATGGGTTTTTGGTGTTGTAGATCTTTCCAACGCCCAAC 5421772
Query 33124 TCAGAAATCAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATT 33183
|| | ||| | ||||| ||||| || || || ||||| || ||||||||
Sbjct 5421773 TCCACGAGCAAACGGTCCGCTACGAACTCAATGTACTGGGACATCAGGTCGCAATTCATG 5421832
Query 33184 CCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCT 33243
|| || | || || || || || | || || || || || || |||| ||||| ||
Sbjct 5421833 CCGATCAAATTGACGGGCAGGGCATCGGTGAGGAACTCCTGCTCTATGGCCACCGCGTCG 5421892
Query 33244 GTTATAATAGATCTAACGGTTTCT-TCACTC---GGTGGATGCAATAAATGTTTAAACAT 33299
|| ||||| | | | || | | ||| | |||| | || | |||||
Sbjct 5421893 CGGAT----GATCTCGATGATGCGCTCGCGCTTGGGTCGCTGCACCAGGTGCTGGAACAT 5421948
Query 33300 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGT 33359
|| || || |||||||||| |||||||| | | || || |||||||| || ||
Sbjct 5421949 CAGCACGGCAAAGTCGCAGTGCAAGCCCTCGTCGCGAGAGATCAGCTCGTTGGAGAAGGT 5422008
Query 33360 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAA 33419
| ||| ||||| || || ||||| |||||||| || ||||| ||||| || ||
Sbjct 5422009 CAATCCAGGCATCAGACCGCGCTTCTTAAGCCAGAAAATGGAGGCGAAGCTGCCGCTGAA 5422068
Query 33420 GAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG--CTGTCA 33477
||| || || || || || |||||||| || | | ||| || || ||| || |
Sbjct 5422069 GAAAATGCCCTCCACGGCGGCAAAGGCGATGATGCGCTCCCCGAAATTGGCCGACTTGGA 5422128
Query 33478 TGT-ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 33536
|| ||||| | ||||| || ||||| || ||| ||||||||||| || ||
Sbjct 5422129 TGAGATCCAGGACAGGGCCCAGTCTGCCTTGCGCTTCACAGCCGGCATCGTTTCGATAGC 5422188
Query 33537 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATA 33596
|| || || || | | | | ||| | ||||| |||||||||| ||| ||
Sbjct 5422189 GTTGAACAGGTACTCTCGCTGGTGTGGATCCCGGATGTAAGTGTCGATCAAAACACTGTA 5422248
Query 33597 CATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGT 33656
||| ||||| || | ||| || ||||| ||||| || |||||||| |||| ||||| ||
Sbjct 5422249 CATCTCCGAGTGCACGTTCTCCATGGCGATCTGGAAGCCGTAGAAGCATCGTGCCTCCGT 5422308
Query 33657 AATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGC 33716
||||| || || || || || ||| ||| || || || || || || ||| |||
Sbjct 5422309 GATCTGCACCTCCTGACTGAAGCGCTCCACCAGGTTCTCGTTTACGATGCCATCAGAGGC 5422368
Query 33717 TGCAAAAAACGCCA 33730
|| || || ||||
Sbjct 5422369 GGCGAAGAAGGCCA 5422382
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622832492059960
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