Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18] 14,731 sequences; 166,592,095 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq1555 214 5e-50 >seq1555 Length=7220098 Score = 214 bits (236), Expect = 5e-50 Identities = 610/927 (66%), Gaps = 13/927 (1%) Strand=Plus/Minus Query 363387 TATTTTCGGATATAAGACGATGGAGAAATCCTACCTATCTCGT-ATCAATGGTGATATTG 363445 |||||| || | |||||| ||||| ||||| || |||| | || || | || | Sbjct 5752299 TATTTT-GGCTTCAAGACGCTGGAGCGTTCCTATCT-TCTCAAGAGAAACGGAAAGATCG 5752242 Query 363446 TTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTG 363505 || || |||||||||||| | ||||| ||||| || || |||||| | |||| | | Sbjct 5752241 CAGAGCGACCGCAGCATATGCTGATGCGCGTTGCGATCGGAATCCATGGAGAGGATATCG 5752182 Query 363506 ATGCCGCGATTGAAACATATAAGCTTCTAAGTGCTCGTGTATTCACGCACGCCACGCCAA 363565 |||| || | ||||| ||||| ||||| | || |||||||| || |||| | Sbjct 5752181 ATGCGGCCGTGGAAACCTATAATCTTCTGTCGGAGCGCTACTTCACGCATGCATCGCCCA 5752122 Query 363566 CAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGA 363625 || ||| |||| || || ||| |||| || || || ||||| | |||| Sbjct 5752121 CACTGTTTGCCGCTGCCACAAACCGGCCGCAGTTGTCGTCGTGTTTCCTTCTGACCATGA 5752062 Query 363626 AGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGA 363685 | ||| ||||||||||| || || | | | | | || || | || |||||| Sbjct 5752061 CAGCCGACTCCATCGAGGGCATTTTCAAGTCTGTGGAACAATGCGCCATGATCTCCAAGT 5752002 Query 363686 ATGCAGGCGGAATTGGTGT-ATCGATCCACAATGTTCGTGCACAGAACAGTTACATTCGC 363744 || || || || || | | || | || |||||||| || || | ||| || Sbjct 5752001 CCGCCGGTGGCATCGGACTCAACG-TGCATTGCATTCGTGCAAAGGGCACCTCGATTTGC 5751943 Query 363745 GGCACAGGGGGATACT-CGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGC 363803 |||||| || |||| | |||||| ||||||||||||| | || || | ||| || Sbjct 5751942 GGCACAAATGG-TACTTCCAATGGGTTGGTTCCCATGCTGAGGGTCTTCAATAATGTGGC 5751884 Query 363804 GAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCC 363863 | || || || ||||| || || ||||| || || ||||| || ||| | || || Sbjct 5751883 ACGTTATGTGGATCAGGGAGGCGGCAAGCGTCCCGGTGCCTTTGCCATTTATTTGGAACC 5751824 Query 363864 TCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATT 363923 || | ||| | |||||||| || || || ||| |||||||| ||||| || Sbjct 5751823 CTGGCACTCGGATGTCTTTGAGTTCCTGGAACTGAAGAAGAACACGGGCAAAGAAGAGAA 5751764 Query 363924 GCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGA 363983 || ||||| |||||||| || || || ||| | | || | || ||||| ||||| || Sbjct 5751763 TCGCGCACGCGATCTGTTTTACGCCCTGTGGATACCCGATCTCTTCATGAAACGCGTTGA 5751704 Query 363984 GGC---AGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGT 364040 ||| ||| ||||||| ||| | ||||| ||| | ||||| ||||| ||| || Sbjct 5751703 GGCCAACGGT---GATTGGTCGCTCATGTGCCCCCACAAGTGTCCTGGTCTCCACGAAGT 5751647 Query 364041 ATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAA 364100 ||||| || || | | || ||||| || || || ||||| ||| Sbjct 5751646 GTGGGGCGATGAATTCGAAAAGCTGTACGAGAAATACGAGCAAGAGGGTCGGGCCAACCG 5751587 Query 364101 GACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAAC 364160 || || || || || |||||||||||||| || |||| | ||||| |||| Sbjct 5751586 AACGGTTAAGGCTCAATCCCTGTGGTTTGCCATCATTGAGGCGCAAGTGGAGACCGGAAA 5751527 Query 364161 ACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTAC 364220 || || ||| | | ||| || | |||||| | ||| |||||||||| | | || || Sbjct 5751526 TCCGTACATGCTCTTCAAGGACGCTTGCAACAGGAAGAGCAACCAGCAGAATGTGGGCAC 5751467 Query 364221 AATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGC 364280 || || |||||| | || || || || ||||||| || | || || |||| ||| Sbjct 5751466 CATCAAGTGCAGCAACTTGTGCACGGAAATCGTTGAATATTCCTCACCGGATGAGATTGC 5751407 Query 364281 CGTATGTAACCTTGCGTCGATCGCGCT 364307 || || ||| | || || ||||| || Sbjct 5751406 AGTCTGCAACTTGGCCTCCATCGCCCT 5751380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303107603819642