Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18] 14,731 sequences; 166,592,095 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq1557 140 3e-28 seq1556 93.3 4e-14 seq1555 91.5 1e-13 >seq1557 Length=14215200 Score = 140 bits (154), Expect = 3e-28 Identities = 161/217 (74%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 51059 TGTCGTGCACACCGCAAATTGACCACATACAACCCACATAATTGTTAGGATCGCGACCAT 51118 |||| || || |||| ||| |||||||| ||||| ||||| ||| || ||||| |||| Sbjct 1364700 TGTCATGGACGCCGCCAATGGACCACATGCAACCGACATAGCCGTTGGGGTCGCGTCCAT 1364641 Query 51119 CCACGCTGTAATGATCGTTTAGAAATATGGCATAACCCAATGCCATGTCTGCACTAGGCG 51178 ||| ||||| | ||||| || | || || || |||| ||| || | | | | Sbjct 1364640 CCAGACTGTACTTGTCGTTCAGTAGGATTGCGTATTCCAACGCCTGCTCCGGTGTCGCTG 1364581 Query 51179 TCCATTCCATAATTTTCTTGGCCCAGTACATGCGCATGTAACCGTGCATCTTGCCCTCGC 51238 ||||||||| ||| || ||||||||||||||||||| | |||||||| || ||||||| Sbjct 1364580 TCCATTCCAGAATCTTTTTGGCCCAGTACATGCGCAAAAAGCCGTGCATTTTTCCCTCGC 1364521 Query 51239 AACGAAGCTGCGCTTGAGCCGAGTTCCACAATTCGTC 51275 |||||| ||| ||||||||||||| ||||| Sbjct 1364520 GCACCAGCTGCAGTTGCGCCGAGTTCCACAGGTCGTC 1364484 >seq1556 Length=7591821 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || |||||||||||||| || ||||||| | || || || |||| Sbjct 3893203 ATGCAGATCTTCGTGAAGACTTTGACCGGAAAGACCATCACTCTTGAGGTAGAACCGTCG 3893144 Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| |||||| | || || || | ||| || || || || || | || || || Sbjct 3893143 GACACCATCGAGAATGTTAAGGCTAAGATTCA-GGATAAGGAGGGAATCTCCCCAGATCA 3893085 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | || || |||||||| ||| | ||||| | ||||| || ||||||||| Sbjct 3893084 GCAGCGTCTCATCTTCGCCGGCAAGCAACTGGAAGACGGACGCACCCTGTCCGATTACAA 3893025 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || || || || || || || || Sbjct 3893024 CATCCAGAAGGAGTCGACCCTTCACTTGGTTCT 3892992 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || |||||||||||||| || | ||||| |||| || ||| | ||| Sbjct 3894799 ATGCAGATCTTCGTGAAGACTTTGACCGGAAAGACTATCACCCTCGAGGTAGAGCCTTCT 3894740 Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || ||| | || || || | ||| || || || || ||||| || || || Sbjct 3894739 GATACCATTGAGAATGTTAAGGCTAAGATTCA-GGATAAGGAGGGAATTCCCCCAGATCA 3894681 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | || || ||||| || || | || |||| ||||| || |||||||| Sbjct 3894680 GCAGCGTCTGATCTTCGCCGGAAAGCAGCTTGAGGATGGACGCACCCTGTCGGATTACAA 3894621 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || || || || || || || || || | || ||||||| Sbjct 3894620 CATCCAGAAGGAGTCGACCCTTCACTTGGTTCTGCGTCTGCGAGGAGG 3894573 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | || || || ||||||| | || || ||| | || Sbjct 3894571 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACTTTGGAGGTTGAGCCATCG 3894512 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| ||||| || ||| ||||| || || || || || || || Sbjct 3894511 GACACCATTGAGAATGTGAAGGCTAAGATCCAAGACAAGGAGGGCATCCCCCCAGATCAG 3894452 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || |||||||||||| | || || | ||||| | ||||||||| Sbjct 3894451 CAGCGTCTCATCTTCGCCGGCAAACAACTGGAGGACGGACGCACCCTTTCCGATTACAAC 3894392 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| || || || || || || || || || Sbjct 3894391 ATTCAGAAGGAGTCGACCCTTCACTTGGTTCT 3894360 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | || || || ||||||| | || || ||| | || Sbjct 3895255 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACTTTGGAGGTTGAGCCATCG 3895196 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| ||||| || ||| ||||| || || || || || || || Sbjct 3895195 GACACCATTGAGAATGTGAAGGCTAAGATCCAAGACAAGGAGGGCATCCCCCCAGATCAG 3895136 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || |||||||||||| | || || | ||||| | ||||||||| Sbjct 3895135 CAGCGTCTCATCTTCGCCGGCAAACAACTGGAGGACGGACGCACCCTTTCCGATTACAAC 3895076 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| || || || || || || || || || Sbjct 3895075 ATTCAGAAGGAGTCGACCCTTCACTTGGTTCT 3895044 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || |||||||||||||| || |||||| | || || || |||| Sbjct 3893887 ATGCAGATCTTCGTGAAGACTTTGACCGGAAAGACCATCAACCTTGAGGTAGAACCGTCG 3893828 Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| |||||| | || || || | ||| || || || || || || || || || Sbjct 3893827 GACACCATCGAGAATGTTAAGGCTAAGATTCA-GGATAAGGAGGGAATCCCCCCAGATCA 3893769 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | || || |||||||| || | || || | ||||| || ||||||||| Sbjct 3893768 GCAGCGTCTGATCTTCGCCGGCAAGCAGCTTGAGGACGGACGCACCCTGTCCGATTACAA 3893709 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || || || || || || || || Sbjct 3893708 CATCCAGAAGGAGTCGACCCTTCACTTGGTTCT 3893676 >seq1555 Length=7220098 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/216 (70%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | || || || ||||||| | || || || |||| Sbjct 5837718 ATGCAGATCTTCGTTAAGACCCTCACGGGCAAGACCATCACTCTTGAGGTCGAACCGTCG 5837777 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || |||||||| |||| |||| || | ||| ||||||||||| ||||| || || Sbjct 5837778 GATACTATCGAAAATGTCA---AAGCCAAGATTCAG-GACAAAGAAGGAATTCCTCCAGA 5837833 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 || ||||| | || || || ||||| || | ||||||| ||||| | || || Sbjct 5837834 TCAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTA 5837893 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || ||||| || || ||||| || || || ||||| Sbjct 5837894 TAACATTCAGAAGGAGTCCACTCTGCACTTGGTGCT 5837929 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433250202863765