Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18]
14,731 sequences; 166,592,095 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq1557 140 3e-28
seq1556 93.3 4e-14
seq1555 91.5 1e-13
>seq1557
Length=14215200
Score = 140 bits (154), Expect = 3e-28
Identities = 161/217 (74%), Gaps = 0/217 (0%)
Strand=Plus/Minus
Query 51059 TGTCGTGCACACCGCAAATTGACCACATACAACCCACATAATTGTTAGGATCGCGACCAT 51118
|||| || || |||| ||| |||||||| ||||| ||||| ||| || ||||| ||||
Sbjct 1364700 TGTCATGGACGCCGCCAATGGACCACATGCAACCGACATAGCCGTTGGGGTCGCGTCCAT 1364641
Query 51119 CCACGCTGTAATGATCGTTTAGAAATATGGCATAACCCAATGCCATGTCTGCACTAGGCG 51178
||| ||||| | ||||| || | || || || |||| ||| || | | | |
Sbjct 1364640 CCAGACTGTACTTGTCGTTCAGTAGGATTGCGTATTCCAACGCCTGCTCCGGTGTCGCTG 1364581
Query 51179 TCCATTCCATAATTTTCTTGGCCCAGTACATGCGCATGTAACCGTGCATCTTGCCCTCGC 51238
||||||||| ||| || ||||||||||||||||||| | |||||||| || |||||||
Sbjct 1364580 TCCATTCCAGAATCTTTTTGGCCCAGTACATGCGCAAAAAGCCGTGCATTTTTCCCTCGC 1364521
Query 51239 AACGAAGCTGCGCTTGAGCCGAGTTCCACAATTCGTC 51275
|||||| ||| ||||||||||||| |||||
Sbjct 1364520 GCACCAGCTGCAGTTGCGCCGAGTTCCACAGGTCGTC 1364484
>seq1556
Length=7591821
Score = 93.3 bits (102), Expect = 4e-14
Identities = 150/213 (70%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || |||||||||||||| || ||||||| | || || || ||||
Sbjct 3893203 ATGCAGATCTTCGTGAAGACTTTGACCGGAAAGACCATCACTCTTGAGGTAGAACCGTCG 3893144
Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
||||| |||||| | || || || | ||| || || || || || | || || ||
Sbjct 3893143 GACACCATCGAGAATGTTAAGGCTAAGATTCA-GGATAAGGAGGGAATCTCCCCAGATCA 3893085
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
||||| | || || |||||||| ||| | ||||| | ||||| || |||||||||
Sbjct 3893084 GCAGCGTCTCATCTTCGCCGGCAAGCAACTGGAAGACGGACGCACCCTGTCCGATTACAA 3893025
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|| || || || || || || || || || ||
Sbjct 3893024 CATCCAGAAGGAGTCGACCCTTCACTTGGTTCT 3892992
Score = 89.7 bits (98), Expect = 4e-13
Identities = 158/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || |||||||||||||| || | ||||| |||| || ||| | |||
Sbjct 3894799 ATGCAGATCTTCGTGAAGACTTTGACCGGAAAGACTATCACCCTCGAGGTAGAGCCTTCT 3894740
Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
|| || || ||| | || || || | ||| || || || || ||||| || || ||
Sbjct 3894739 GATACCATTGAGAATGTTAAGGCTAAGATTCA-GGATAAGGAGGGAATTCCCCCAGATCA 3894681
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
||||| | || || ||||| || || | || |||| ||||| || ||||||||
Sbjct 3894680 GCAGCGTCTGATCTTCGCCGGAAAGCAGCTTGAGGATGGACGCACCCTGTCGGATTACAA 3894621
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
|| || || || || || || || || || || | || |||||||
Sbjct 3894620 CATCCAGAAGGAGTCGACCCTTCACTTGGTTCTGCGTCTGCGAGGAGG 3894573
Score = 86.0 bits (94), Expect = 5e-12
Identities = 146/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || ||||| | || || || ||||||| | || || ||| | ||
Sbjct 3894571 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACTTTGGAGGTTGAGCCATCG 3894512
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||||| || ||| ||||| || ||| ||||| || || || || || || ||
Sbjct 3894511 GACACCATTGAGAATGTGAAGGCTAAGATCCAAGACAAGGAGGGCATCCCCCCAGATCAG 3894452
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||||| | || || |||||||||||| | || || | ||||| | |||||||||
Sbjct 3894451 CAGCGTCTCATCTTCGCCGGCAAACAACTGGAGGACGGACGCACCCTTTCCGATTACAAC 3894392
Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
||||| || || || || || || || || ||
Sbjct 3894391 ATTCAGAAGGAGTCGACCCTTCACTTGGTTCT 3894360
Score = 86.0 bits (94), Expect = 5e-12
Identities = 146/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || ||||| | || || || ||||||| | || || ||| | ||
Sbjct 3895255 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACTTTGGAGGTTGAGCCATCG 3895196
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||||| || ||| ||||| || ||| ||||| || || || || || || ||
Sbjct 3895195 GACACCATTGAGAATGTGAAGGCTAAGATCCAAGACAAGGAGGGCATCCCCCCAGATCAG 3895136
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||||| | || || |||||||||||| | || || | ||||| | |||||||||
Sbjct 3895135 CAGCGTCTCATCTTCGCCGGCAAACAACTGGAGGACGGACGCACCCTTTCCGATTACAAC 3895076
Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
||||| || || || || || || || || ||
Sbjct 3895075 ATTCAGAAGGAGTCGACCCTTCACTTGGTTCT 3895044
Score = 84.2 bits (92), Expect = 2e-11
Identities = 148/213 (69%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || |||||||||||||| || |||||| | || || || ||||
Sbjct 3893887 ATGCAGATCTTCGTGAAGACTTTGACCGGAAAGACCATCAACCTTGAGGTAGAACCGTCG 3893828
Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
||||| |||||| | || || || | ||| || || || || || || || || ||
Sbjct 3893827 GACACCATCGAGAATGTTAAGGCTAAGATTCA-GGATAAGGAGGGAATCCCCCCAGATCA 3893769
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
||||| | || || |||||||| || | || || | ||||| || |||||||||
Sbjct 3893768 GCAGCGTCTGATCTTCGCCGGCAAGCAGCTTGAGGACGGACGCACCCTGTCCGATTACAA 3893709
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|| || || || || || || || || || ||
Sbjct 3893708 CATCCAGAAGGAGTCGACCCTTCACTTGGTTCT 3893676
>seq1555
Length=7220098
Score = 91.5 bits (100), Expect = 1e-13
Identities = 151/216 (70%), Gaps = 8/216 (4%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || ||||| | || || || ||||||| | || || || ||||
Sbjct 5837718 ATGCAGATCTTCGTTAAGACCCTCACGGGCAAGACCATCACTCTTGAGGTCGAACCGTCG 5837777
Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114
|| |||||||| |||| |||| || | ||| ||||||||||| ||||| || ||
Sbjct 5837778 GATACTATCGAAAATGTCA---AAGCCAAGATTCAG-GACAAAGAAGGAATTCCTCCAGA 5837833
Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174
|| ||||| | || || || ||||| || | ||||||| ||||| | || ||
Sbjct 5837834 TCAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTA 5837893
Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|| ||||| || || ||||| || || || |||||
Sbjct 5837894 TAACATTCAGAAGGAGTCCACTCTGCACTTGGTGCT 5837929
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433250202863765
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |