Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18] 14,731 sequences; 166,592,095 total letters Query= NC_008348.1 Length=168041 Score E Sequences producing significant alignments: (Bits) Value seq1558 82.4 8e-11 >seq1558 Length=21120651 Score = 82.4 bits (90), Expect = 8e-11 Identities = 224/338 (66%), Gaps = 15/338 (4%) Strand=Plus/Minus Query 127538 GGTTTGCACGGGTTACACGTGCACGAGTTCGGCGACACGTCGAACGGTTGCACGTCGGCG 127597 ||| |||| || || |||||||||||||| || |||| | ||||| |||| ||| | Sbjct 3328251 GGTCTGCATGGATTCCACGTGCACGAGTTTGGAGACAACACCAACGGCTGCATGTCATCC 3328192 Query 127598 GGGGAACACTTCAATCCCACCGGTATGGATCACGGAGCGCC---CAACGCGCTCGTTCGT 127654 || ||||||||||| || | ||| ||||| || || | ||| | | ||| Sbjct 3328191 GGACCCCACTTCAATCCGTATGGCAAGGAGCACGGCGCTCCCGTCGACGAGAAC---CGT 3328135 Query 127655 CACGTTGGCGACCTGGGCAACGTGGAGGCGGCTAGCAGCAATTCTTTGACCGAAGTCAAC 127714 ||| | ||||| ||||||||| | || ||| | | || | | ||| | |||||| Sbjct 3328134 CACCTGGGCGATCTGGGCAACATTGA---GGCCACCGGCGACTGCCCCACCAAGGTCAAC 3328078 Query 127715 ATCATCGAC---CACGTCATGTCTCTGTACGGACCGAACAGCGTCATCGGTAGGAGTCTG 127771 |||| |||| | ||| | |||| | || | ||||| ||||||| | | || Sbjct 3328077 ATCACCGACTCGAAGATCACG-CTCTTT--GGCGCCGACAGCATCATCGGACGCACCGTG 3328021 Query 127772 GTCGTGCACACGGATCGTGACGATCTCGGCCTGACCGATCATTATTTGAGCAAAACCACC 127831 ||||||||| | ||| || ||||| |||| | | || | ||||||| | || Sbjct 3328020 GTCGTGCACGCCGATGCCGATGATCTTGGCCAGGGTGGACACGAGCTGAGCAAGTCAACG 3327961 Query 127832 GGCAACTCGGGCGGTCGGTTGGGGTGCGGGATCATTGG 127869 |||||| | || | || | || ||||| | ||||| Sbjct 3327960 GGCAACGCTGGTGCCCGCATCGGCTGCGGCGTTATTGG 3327923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 537504207090760