Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18] 14,731 sequences; 166,592,095 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq1557 242 4e-59 seq1558 125 8e-24 seq1531 109 6e-19 seq1555 93.3 5e-14 >seq1557 Length=14215200 Score = 242 bits (268), Expect = 4e-59 Identities = 592/888 (67%), Gaps = 13/888 (1%) Strand=Plus/Plus Query 92743 TAGAAATCTGCATCTAGTGTAAATACATTGTCAAGTGGATTCTTATTCATAACACCACAT 92802 |||||||| || || || || || || ||||| || ||||| | || | || ||| Sbjct 5421605 TAGAAATCCGCGTCCAGGGTGAACACGTTGTCCAGGGGATTGCTGACCA---CTCC-CAT 5421660 Query 92803 TTT-TGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCGA 92861 ||||| ||| | || || || || || || || |||||||| |||| |||||| Sbjct 5421661 GCGCTGGTACTCCGCCACCTTCTTCTCGAAAAAGTTGGTCTTTCCGTCCAGCGATATCAT 5421720 Query 92862 ATTCACTAG--TGATTGGATTCTTGGCGTTATAATACTTTTCACCGATCAACTCGTACAA 92919 | || | | | ||| || |||| ||| || |||| || || |||||| | Sbjct 5421721 CTCCATGAAGTTAAATGGGTTTTTGGTGTTGTAGATCTTTCCAACGCCCAACTCCACGAG 5421780 Query 92920 TAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAG 92979 || | || ||||| || || |||||||| ||||||| || |||||||| || | | Sbjct 5421781 CAAACGGTCCGCTACGAACTCAATGTACTGGGACATCAGGTCGCAATTCATGCCGATCAA 5421840 Query 92980 ACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGAT 93039 | || || || || ||||| | ||| || | ||| || | || || || | ||| Sbjct 5421841 ATTGACGGGCAGGGCATCGGTGAGGAACTCCTGCTCTATGGCCACCGCGTCGCGGATGAT 5421900 Query 93040 TTCTATTA--CTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACG-C 93096 || || | | || |||| || || || | | | | |||| | ||||| | Sbjct 5421901 CTCGATGATGCGCTCGCGCTTGG--GTCGCTGCACCAGGTGCTGGAACATCA-GCACGGC 5421957 Query 93097 AAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGG 93156 ||||||| || || || ||||| || || |||| ||| ||| ||| || || || || Sbjct 5421958 AAAGTCGCAGTGCAAGCCCTCGTCGCGAGAGATCAGCTCGTTGGAGAAGGTCAATCCAGG 5422017 Query 93157 TAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACC 93216 | ||| || || ||||| ||||| || || || || || || || || || || || Sbjct 5422018 CATCAGACCGCGCTTCTTAAGCCAGAAAATGGAGGCGAAGCTGCCGCTGAAGAAAATGCC 5422077 Query 93217 TTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCA 93276 |||||||| ||||| || | || || || | ||||| || || || |||||| Sbjct 5422078 CTCCACGGCGGCAAAGGCGATGATGCGCTCCCCGAAATTGGCCGACTTGGATGAGATCCA 5422137 Query 93277 TTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAG 93336 | ||||| || || || ||| | | || | |||||||||||||| || || Sbjct 5422138 GGACAGGGCCCAGTCTGCCTTGCGCTTCACAGCCGGCATCGTTTCGATAGCGTTGAACAG 5422197 Query 93337 GTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGA 93396 ||| ||||||| || | ||| || ||||| || ||||| || | | ||||| || || Sbjct 5422198 GTACTCTCGCTGGTGTGGATCCCGGATGTAAGTGTCGATCAAAACACTGTACATCTCCGA 5422257 Query 93397 ATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCAC 93456 || || |||||||| || || ||||| |||||||| |||| || |||||||||||||| Sbjct 5422258 GTGCACGTTCTCCATGGCGATCTGGAAGCCGTAGAAGCATCGTGCCTCCGTGATCTGCAC 5422317 Query 93457 TTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaa 93516 || ||| || | ||| || || || || || || || ||||| || || || || || Sbjct 5422318 CTCCTGACTGAAGCGCTCCACCAGGTTCTCGTTTACGATGCCATCAGAGGCGGCGAAGAA 5422377 Query 93517 aGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAG 93576 |||| | ||| || ||||| ||| || || || || | ||| || | || Sbjct 5422378 GGCCAGCACGTGCGAGATGAAATGGCGCTCGTCGTCCTTCAGGCGGTGCCAGTCAGTAAG 5422437 Query 93577 ATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGC 93624 || || || | ||| || || ||||| ||||| || || || || || Sbjct 5422438 GTCCTTGGACAAATCCACCTCCTCGACGGTCCAGAAAGAAGCCTCAGC 5422485 >seq1558 Length=21120651 Score = 125 bits (138), Expect = 8e-24 Identities = 81/88 (92%), Gaps = 2/88 (2%) Strand=Plus/Plus Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGA 126320 |||||||||||||||||| |||||||||||||||||||||| |||||||| | |||| Sbjct 20423422 ACAGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCTCGAGAGGGA 20423481 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAA 126348 |||||||||||||||||||||||||||| Sbjct 20423482 GCGTGGGTTCGAACCCCACACCTGACAA 20423509 Score = 107 bits (118), Expect = 2e-18 Identities = 76/86 (88%), Gaps = 2/86 (2%) Strand=Plus/Plus Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAG 126321 ||| ||||||||||||| |||||||||||||||||||||| |||||||| | | ||| Sbjct 20276771 CAGCCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCTCGAGAGAGAG 20276830 Query 126322 CGTGGGTTCGAACCCCACACCTGACA 126347 ||||||||||||||||||||||| || Sbjct 20276831 CGTGGGTTCGAACCCCACACCTGGCA 20276856 >seq1531 Length=799419 Score = 109 bits (120), Expect = 6e-19 Identities = 77/87 (89%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 || ||||||||||||| |||||||||||||||||||||| |||||||| | | |||| Sbjct 305665 AGCCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCTCGTGAGAGAGC 305724 Query 126323 GTGGGTTCGAACCCCACACCTGACAAA 126349 |||||||||||||||||||||| |||| Sbjct 305725 GTGGGTTCGAACCCCACACCTGGCAAA 305751 >seq1555 Length=7220098 Score = 93.3 bits (102), Expect = 5e-14 Identities = 72/85 (85%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 || ||||||||||||| |||||||||||||||||||||| |||||||| | | |||| Sbjct 1394696 AGCCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCTCGAAAGAGAGC 1394637 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 ||||||| ||| ||||||||| || Sbjct 1394636 GTGGGTTGGAATACCACACCTGGCA 1394612 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556758261044440