Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18]
14,731 sequences; 166,592,095 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq1557 242 4e-59
seq1558 125 8e-24
seq1531 109 6e-19
seq1555 93.3 5e-14
>seq1557
Length=14215200
Score = 242 bits (268), Expect = 4e-59
Identities = 592/888 (67%), Gaps = 13/888 (1%)
Strand=Plus/Plus
Query 92743 TAGAAATCTGCATCTAGTGTAAATACATTGTCAAGTGGATTCTTATTCATAACACCACAT 92802
|||||||| || || || || || || ||||| || ||||| | || | || |||
Sbjct 5421605 TAGAAATCCGCGTCCAGGGTGAACACGTTGTCCAGGGGATTGCTGACCA---CTCC-CAT 5421660
Query 92803 TTT-TGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCGA 92861
||||| ||| | || || || || || || || |||||||| |||| ||||||
Sbjct 5421661 GCGCTGGTACTCCGCCACCTTCTTCTCGAAAAAGTTGGTCTTTCCGTCCAGCGATATCAT 5421720
Query 92862 ATTCACTAG--TGATTGGATTCTTGGCGTTATAATACTTTTCACCGATCAACTCGTACAA 92919
| || | | | ||| || |||| ||| || |||| || || |||||| |
Sbjct 5421721 CTCCATGAAGTTAAATGGGTTTTTGGTGTTGTAGATCTTTCCAACGCCCAACTCCACGAG 5421780
Query 92920 TAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAG 92979
|| | || ||||| || || |||||||| ||||||| || |||||||| || | |
Sbjct 5421781 CAAACGGTCCGCTACGAACTCAATGTACTGGGACATCAGGTCGCAATTCATGCCGATCAA 5421840
Query 92980 ACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGAT 93039
| || || || || ||||| | ||| || | ||| || | || || || | |||
Sbjct 5421841 ATTGACGGGCAGGGCATCGGTGAGGAACTCCTGCTCTATGGCCACCGCGTCGCGGATGAT 5421900
Query 93040 TTCTATTA--CTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACG-C 93096
|| || | | || |||| || || || | | | | |||| | ||||| |
Sbjct 5421901 CTCGATGATGCGCTCGCGCTTGG--GTCGCTGCACCAGGTGCTGGAACATCA-GCACGGC 5421957
Query 93097 AAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGG 93156
||||||| || || || ||||| || || |||| ||| ||| ||| || || || ||
Sbjct 5421958 AAAGTCGCAGTGCAAGCCCTCGTCGCGAGAGATCAGCTCGTTGGAGAAGGTCAATCCAGG 5422017
Query 93157 TAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACC 93216
| ||| || || ||||| ||||| || || || || || || || || || || ||
Sbjct 5422018 CATCAGACCGCGCTTCTTAAGCCAGAAAATGGAGGCGAAGCTGCCGCTGAAGAAAATGCC 5422077
Query 93217 TTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCA 93276
|||||||| ||||| || | || || || | ||||| || || || ||||||
Sbjct 5422078 CTCCACGGCGGCAAAGGCGATGATGCGCTCCCCGAAATTGGCCGACTTGGATGAGATCCA 5422137
Query 93277 TTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAG 93336
| ||||| || || || ||| | | || | |||||||||||||| || ||
Sbjct 5422138 GGACAGGGCCCAGTCTGCCTTGCGCTTCACAGCCGGCATCGTTTCGATAGCGTTGAACAG 5422197
Query 93337 GTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGA 93396
||| ||||||| || | ||| || ||||| || ||||| || | | ||||| || ||
Sbjct 5422198 GTACTCTCGCTGGTGTGGATCCCGGATGTAAGTGTCGATCAAAACACTGTACATCTCCGA 5422257
Query 93397 ATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCAC 93456
|| || |||||||| || || ||||| |||||||| |||| || ||||||||||||||
Sbjct 5422258 GTGCACGTTCTCCATGGCGATCTGGAAGCCGTAGAAGCATCGTGCCTCCGTGATCTGCAC 5422317
Query 93457 TTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaa 93516
|| ||| || | ||| || || || || || || || ||||| || || || || ||
Sbjct 5422318 CTCCTGACTGAAGCGCTCCACCAGGTTCTCGTTTACGATGCCATCAGAGGCGGCGAAGAA 5422377
Query 93517 aGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAG 93576
|||| | ||| || ||||| ||| || || || || | ||| || | ||
Sbjct 5422378 GGCCAGCACGTGCGAGATGAAATGGCGCTCGTCGTCCTTCAGGCGGTGCCAGTCAGTAAG 5422437
Query 93577 ATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGC 93624
|| || || | ||| || || ||||| ||||| || || || || ||
Sbjct 5422438 GTCCTTGGACAAATCCACCTCCTCGACGGTCCAGAAAGAAGCCTCAGC 5422485
>seq1558
Length=21120651
Score = 125 bits (138), Expect = 8e-24
Identities = 81/88 (92%), Gaps = 2/88 (2%)
Strand=Plus/Plus
Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGA 126320
|||||||||||||||||| |||||||||||||||||||||| |||||||| | ||||
Sbjct 20423422 ACAGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCTCGAGAGGGA 20423481
Query 126321 GCGTGGGTTCGAACCCCACACCTGACAA 126348
||||||||||||||||||||||||||||
Sbjct 20423482 GCGTGGGTTCGAACCCCACACCTGACAA 20423509
Score = 107 bits (118), Expect = 2e-18
Identities = 76/86 (88%), Gaps = 2/86 (2%)
Strand=Plus/Plus
Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAG 126321
||| ||||||||||||| |||||||||||||||||||||| |||||||| | | |||
Sbjct 20276771 CAGCCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCTCGAGAGAGAG 20276830
Query 126322 CGTGGGTTCGAACCCCACACCTGACA 126347
||||||||||||||||||||||| ||
Sbjct 20276831 CGTGGGTTCGAACCCCACACCTGGCA 20276856
>seq1531
Length=799419
Score = 109 bits (120), Expect = 6e-19
Identities = 77/87 (89%), Gaps = 2/87 (2%)
Strand=Plus/Plus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322
|| ||||||||||||| |||||||||||||||||||||| |||||||| | | ||||
Sbjct 305665 AGCCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCTCGTGAGAGAGC 305724
Query 126323 GTGGGTTCGAACCCCACACCTGACAAA 126349
|||||||||||||||||||||| ||||
Sbjct 305725 GTGGGTTCGAACCCCACACCTGGCAAA 305751
>seq1555
Length=7220098
Score = 93.3 bits (102), Expect = 5e-14
Identities = 72/85 (85%), Gaps = 2/85 (2%)
Strand=Plus/Minus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322
|| ||||||||||||| |||||||||||||||||||||| |||||||| | | ||||
Sbjct 1394696 AGCCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCTCGAAAGAGAGC 1394637
Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347
||||||| ||| ||||||||| ||
Sbjct 1394636 GTGGGTTGGAATACCACACCTGGCA 1394612
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556758261044440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |