Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18] 14,731 sequences; 166,592,095 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq1556 95.1 1e-14 seq1555 91.5 1e-13 >seq1556 Length=7591821 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | ||| || || | || || || || ||||||||||||||| Sbjct 3894342 ATACCACCACGCAGACGGAGAACCAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAATCG 3894401 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || || || |||||||| || ||| ||||||||||||| || || || Sbjct 3894402 GAAAGGGTGCGTCCGTCCTCCAGTTGTTTGCCGGCGAAGATGAGACGCTGCTGATCTGGG 3894461 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || ||||| || ||||| ||||| || | | |||| |||||| | | || Sbjct 3894462 GGGATGCCCTCCTTGTCTTGGATCTTAGCCTTCACATTCTCAATGGTGTCCGATGGCTCA 3894521 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | || ||||| || || || || || || |||||||| Sbjct 3894522 ACCTCCAAAGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 3894571 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | ||| || || | || || || || ||||||||||||||| Sbjct 3895026 ATACCACCACGCAGACGGAGAACCAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAATCG 3895085 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || || || |||||||| || ||| ||||||||||||| || || || Sbjct 3895086 GAAAGGGTGCGTCCGTCCTCCAGTTGTTTGCCGGCGAAGATGAGACGCTGCTGATCTGGG 3895145 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || ||||| || ||||| ||||| || | | |||| |||||| | | || Sbjct 3895146 GGGATGCCCTCCTTGTCTTGGATCTTAGCCTTCACATTCTCAATGGTGTCCGATGGCTCA 3895205 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | || ||||| || || || || || || |||||||| Sbjct 3895206 ACCTCCAAAGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 3895255 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | ||| ||||| | || || || || || |||||||||||| Sbjct 3893202 ATACCACCACGCAGACGGAGAACCAAATGGAGGGTTGACTCCTTCTGGATGTTGTAATCG 3893261 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || ||||| | ||| || |||||| |||| |||||||| || || || Sbjct 3893262 GACAGGGTGCGTCCGTCTTCCAATTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGG 3893321 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| || || ||||| || || || | | |||| |||||| | | || Sbjct 3893322 GGAATTCCCTCCTTGTCTTGGATTTTAGCCTTCACATTCTCAATGGTGTCCGATGGCTCA 3893381 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | || ||||| || || || || || || |||||||| Sbjct 3893382 ACCTCCAAAGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 3893431 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | ||| || || | || || || || || |||||||||||| Sbjct 3893430 ATACCACCACGCAGACGGAGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCG 3893489 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || ||||| ||||| || || ||| ||||||||||||| || || || Sbjct 3893490 GACAGGGTGCGTCCGTCTTCCAGTTGCTTGCCGGCGAAGATGAGACGCTGCTGATCTGGG 3893549 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || || || || || |||||| || | | |||| |||||| | | || Sbjct 3893550 GGGATTCCCTCCTTATCCTGAATCTTAGCCTTCACATTCTCAATGGTGTCCGATGGCTCA 3893609 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | || ||||| || || || || || || |||||||| Sbjct 3893610 ACCTCCAAAGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 3893659 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | ||| ||||| | || || || || || |||||||||||| Sbjct 3893886 ATACCACCACGCAGACGGAGAACCAAATGGAGGGTTGACTCCTTCTGGATGTTGTAATCG 3893945 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || ||||| | ||| || |||||| |||| |||||||| || || || Sbjct 3893946 GACAGGGTGCGTCCGTCTTCCAATTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGG 3894005 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| || || ||||| || || || | | |||| |||||| | | || Sbjct 3894006 GGAATTCCCTCCTTGTCTTGGATTTTAGCCTTCACATTCTCAATGGTGTCCGATGGCTCA 3894065 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | || ||||| || || || || || || |||||||| Sbjct 3894066 ACCTCCAAAGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 3894115 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || || || | || ||| || || | || || || || || ||||||||||| Sbjct 3895254 ATACCTCCTCGCAGACGCAGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCC 3895313 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || ||| ||||| || || || ||| |||| |||||||| || || || Sbjct 3895314 GACAGGGTGCGTCCATCCTCAAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCTGGG 3895373 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| || || || || |||||| || | | |||| |||||| | | || Sbjct 3895374 GGAATTCCCTCCTTATCCTGAATCTTAGCCTTAACATTCTCAATGGTGTCAGACGGCTCT 3895433 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | || || ||||||| || || ||||| |||||||| Sbjct 3895434 ACCTCGAGGGTGATGGTCTTTCCGGTCAAGGTCTTCACAAAGATCTGCAT 3895483 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | ||| || || | || || || || || |||||||||||| Sbjct 3892974 ATACCACCACGCAGACGGAGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCG 3893033 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || ||||| ||||| || || ||| ||||||||||||| || || || Sbjct 3893034 GACAGGGTGCGTCCGTCTTCCAGTTGCTTGCCGGCGAAGATGAGACGCTGCTGATCTGGG 3893093 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 | || || || || || |||||| || | | || | |||||| | | ||| Sbjct 3893094 GAGATTCCCTCCTTATCCTGAATCTTAGCCTTAACATTCTCGATGGTGTCCGACGGTTCT 3893153 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | || || ||||||| ||| || || || |||||||| Sbjct 3893154 ACCTCAAGAGTGATGGTCTTTCCGGTCAAAGTCTTCACGAAGATCTGCAT 3893203 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| |||| | ||| || || | || || || || || |||||||||||| Sbjct 3894114 ATACCACCACGCAGTCGGAGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCG 3894173 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || || || ||||| || || ||| ||||||||||||| || || || Sbjct 3894174 GAAAGGGTGCGTCCGTCCTCCAGTTGCTTGCCGGCGAAGATGAGACGCTGCTGATCTGGG 3894233 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || || || || || |||||| || | | |||| |||||| | | || Sbjct 3894234 GGGATTCCCTCCTTATCCTGAATCTTAGCCTTCACATTCTCAATGGTGTCCGATGGCTCA 3894293 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | || ||||| || || || || || || |||||||| Sbjct 3894294 ACCTCCAAAGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 3894343 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || || || | || ||| || || | || || || || || ||||||||||| Sbjct 3894570 ATACCTCCTCGCAGACGCAGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCC 3894629 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || ||| ||||| || || || ||| |||| |||||||| || || || Sbjct 3894630 GACAGGGTGCGTCCATCCTCAAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCTGGG 3894689 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| || || || || |||||| || | | |||| ||| || | | || Sbjct 3894690 GGAATTCCCTCCTTATCCTGAATCTTAGCCTTAACATTCTCAATGGTATCAGAAGGCTCT 3894749 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | || || ||||||| ||| || || || |||||||| Sbjct 3894750 ACCTCGAGGGTGATAGTCTTTCCGGTCAAAGTCTTCACGAAGATCTGCAT 3894799 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | ||| || || | || || || || || |||||||||||| Sbjct 3893658 ATACCACCACGCAGACGGAGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCG 3893717 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || || ||||| || || || ||| |||| |||||||| || || || Sbjct 3893718 GACAGGGTGCGTCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGG 3893777 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || || || || || |||||| || | | || | |||||| | | ||| Sbjct 3893778 GGGATTCCCTCCTTATCCTGAATCTTAGCCTTAACATTCTCGATGGTGTCCGACGGTTCT 3893837 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | | | | || || ||||||| ||| || || || |||||||| Sbjct 3893838 ACCTCAAGGTTGATGGTCTTTCCGGTCAAAGTCTTCACGAAGATCTGCAT 3893887 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | ||| | || | || || || || || |||||||||||| Sbjct 3894798 ATACCTCCACGCAGACGGAGAACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCG 3894857 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || || || |||||||| || ||| ||||||||||||| || || || Sbjct 3894858 GAAAGGGTGCGTCCGTCCTCCAGTTGTTTGCCGGCGAAGATGAGACGCTGCTGATCTGGG 3894917 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || || || || || |||||| || | | |||| |||||| | | || Sbjct 3894918 GGGATTCCCTCCTTATCCTGAATCTTAGCCTTCACATTCTCAATGGTGTCCGATGGCTCA 3894977 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | || ||||| || || || || || || |||||||| Sbjct 3894978 ACCTCCAAAGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 3895027 >seq1555 Length=7220098 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| || | | || || || | || || || || |||||||| || || Sbjct 5837945 ACCACCACGCAGGCGGAGCACCAAGTGCAGAGTGGACTCCTTCTGAATGTTATAGTCAGA 5837886 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 | || || |||||| || || || |||||| |||| |||||||| || || ||||| Sbjct 5837885 GAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGG 5837826 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||||||||| |||||| ||| | | ||| | || || | | |||||| Sbjct 5837825 AATTCCTTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTATCCGACGGTTCGAC 5837766 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | || | || ||||| || || || || || || |||||||| Sbjct 5837765 CTCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCAT 5837718 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420058971564372