Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18] 14,731 sequences; 166,592,095 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq1557 331 2e-85 seq1555 320 3e-82 >seq1557 Length=14215200 Score = 331 bits (366), Expect = 2e-85 Identities = 573/820 (70%), Gaps = 21/820 (3%) Strand=Plus/Minus Query 42335 CTGGACCGCCGAGGAGATTGACCTGGCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGA 42394 |||||||| ||||||| | || || |||||||| | | |||| ||| | |||| Sbjct 5422471 CTGGACCGTCGAGGAGGTGGATTTGTCCAAGGACCTTACTGACTGG----CACCGCCTGA 5422416 Query 42395 -GAACGAAAAGTT---TTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCA 42450 | |||| || |||| || || | ||||||||||||||||||||||| |||| Sbjct 5422415 AGGACGACGAGCGCCATTTCATCTCGCACGTGCTGGCCTTCTTCGCCGCCTCTGATGGCA 5422356 Query 42451 TAGTCAATGAGAACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCT 42510 | || || |||||||||| | |||| | ||||||||| | ||||| || | Sbjct 5422355 TCGTAAACGAGAACCTGGTGGAGCGCTTCAGTCAGGAGGTGCAGATCACGGAGGCACGAT 5422296 Query 42511 GCTTCTACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGC 42570 ||||||||||||||||||| ||||| |||||||||||||| ||| ||||| || Sbjct 5422295 GCTTCTACGGCTTCCAGATCGCCATGGAGAACGTGCACTCGGAGATGTACAGTGTTTTGA 5422236 Query 42571 TCAACACGTACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGA 42630 || |||| ||||||| |||||| | |||| | |||||||| || || || |||| Sbjct 5422235 TCGACACTTACATCCGGGATCCACACCAGCGAGAGTACCTGTTCAACGCTATCGAAACGA 5422176 Query 42631 TGCC--CTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGAC-G 42687 |||| ||| | ||| ||||| |||||||| || ||||||| | | | | | Sbjct 5422175 TGCCGGCTG--TGAAGCGCAAGGCAGACTGGGCCCTGTCCTGGATC-TCATCCAAGTCGG 5422119 Query 42688 CAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCG 42747 | | ||||| ||| | | | |||||| ||||||| |||||||| |||||| ||| Sbjct 5422118 CCAATTTCGGGGAGCGCATCATCGCCTTTGCCGCCGTGGAGGGCATTTTCTTCAGCGGCA 5422059 Query 42748 CCTTCGCCTCCATCTTCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCG 42806 |||||||||||| |||||||| ||| || ||| | |||||| ||| | |||||||| Sbjct 5422058 GCTTCGCCTCCATTTTCTGGCTTAAGAAGCGCGGTCT-GATGCCTGGATTGACCTTCTCC 5422000 Query 42807 AACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCG 42866 ||||| || ||| | |||||||| |||| | ||||||||| || ||||| | Sbjct 5421999 AACGAGCTGATCTCTCGCGACGAGGGCTTGCACTGCGACTTTGCCGTGCTGATGTTCCAG 5421940 Query 42867 AGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTG 42926 ||||| ||| ||| | ||||| || | |||||| || || ||| Sbjct 5421939 ---CACCTGGTGCAGCGACCCAAGCGCGAGCGCATCATCGAGATCATCCGCGACGCGGTG 5421883 Query 42927 GAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCAC 42986 | || ||| ||||||||||||| | | |||||||| || |||||||||| | Sbjct 5421882 GCCATAGAGCAGGAGTTCCTCACCGATGCCCTGCCCGTCAATTTGATCGGCATGAATTGC 5421823 Query 42987 GACCTCATGTGCAAGTACATCCAGTACGTCGCCGACCATCTCCT-GTGCCAGATGGGTCT 43045 ||||| |||| | ||||||| ||| ||| || |||| | | || ||| || |||| | Sbjct 5421822 GACCTGATGTCCCAGTACATTGAGTTCGTAGCGGACCGTTTGCTCGTG-GAGTTGGGCGT 5421764 Query 43046 CAGCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGG 43105 | |||||||||| ||| || |||| ||||||| || ||| |||| || Sbjct 5421763 TGGAAAGATCTACAACACCAAAAACCCATTTAACTTCATGGAGATGATATCGCTGGACGG 5421704 Query 43106 CAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145 ||||||||||||||||||||| || || || |||||| Sbjct 5421703 AAAGACCAACTTTTTCGAGAAGAAGGTGGCGGAGTACCAG 5421664 >seq1555 Length=7220098 Score = 320 bits (354), Expect = 3e-82 Identities = 949/1448 (66%), Gaps = 58/1448 (4%) Strand=Plus/Plus Query 243736 CACGCTGAACTGGACGGG-TGCGACGGCGGCCTTGGTCCTCAGGTAGTACATGCCGGTCT 243794 |||| ||||||| | || | || | || | |||||| | ||| |||||||| ||||| | Sbjct 5750476 CACGGTGAACTGAATGGCATTCG-CAGCTGGCTTGGTGCGCAGATAGTACATTCCGGTTT 5750534 Query 243795 TGAGTCCACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCTTTG 243854 | || || ||||| || | ||| |||| |||||||| | ||| || |||| Sbjct 5750535 TAAGACCTGCTTTCCAGGAGTAAAAGTGTATGGAAGTCAGCTT-TCCAT----AG-TTTG 5750588 Query 243855 GGTCGTCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCT 243914 | ||| || | | | ||||| ||||| ||||| || | ||| | | || | Sbjct 5750589 GCTCGGCCAC------ATGTATGTTGAACGACTGACTCTGATCTATGAACGCACCACGAT 5750642 Query 243915 CTGCGGCCATGGTGATGAGGTCCTT--CTGAGATATCTCATACGCCGTCTTGTAGATGGG 243972 | |||||||| | || | ||| ||||||| || || || |||||| || | | Sbjct 5750643 CGGCGGCCATTTTAATCGTGGACTTGACTGAGATTTCCCACAC--CGTCTTATACA-GAT 5750699 Query 243973 CTTG-AGGTGCTCGGGGAACCCTTCGATGTTCTGCACCGAGCCCTTG-TGGACGATGAGC 244030 || | | | || ||||| || ||||| || | ||| ||| || |||| |||| | Sbjct 5750700 CTCGCACCTTCTGGGGGATGGTCTCAATGTTTTGAATCGATCCCCTGCTGGAT-ATGATC 5750758 Query 244031 TGGGTGCGCATGTTATCGTTCCACAGGCCCAAGCGCTCC---AGCGCCTCG-ACCAGGTG 244086 ||| | ||||| |||| ||||| | ||| |||| || | | || | || || Sbjct 5750759 TGGTTCTTCATGTCGTCGTCCCACAAGTCCA---GCTCGGTTAG-GTCGCGCAACAAATG 5750814 Query 244087 CCTGTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAG 244146 ||| |||||||| || || || ||||| || || || ||| | ||| || || Sbjct 5750815 ATGGTTGACCACCTGGAATTCGCCGGACAGAACTCGCCGGGTGTATATGTTCGTGGTGTA 5750874 Query 244147 CGGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGA 244206 ||||||| | || ||||||||| |||||| ||||| ||||| |||||||| | Sbjct 5750875 GGGCTCGAAGGATTCATTGTTGCCCATTATCTGAGCCGTAGATGCAGTGGGCATGGGAGC 5750934 Query 244207 CACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTC--TGAGCTCGTTCCAG 244264 || ||||| ||||| || |||||| ||| ||| || || | | | | |||| Sbjct 5750935 AACGAGCAGGGAGTTCCGGACACCGTGCTTCTTAATG--GACTCCTTCAATTTCTGCCAG 5750992 Query 244265 TCCCACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCC 244324 ||||||| | || | ||| | |||||||||| |||||| | || Sbjct 5750993 TCCCACAGGTTCGTTGGCACCTTGT---------CCCACATGTCGTACTGCAAAATTCCT 5751043 Query 244325 TTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAG 244384 ||||| || ||||||||||||||||| ||| | ||| ||| ||||||||| | ||| Sbjct 5751044 TTGCTCACCGGGCTGCCCTCGTAGGTTTCGTATGCACCTTCGGTCTGGGCCAGTTCGCAG 5751103 Query 244385 CTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCC 244444 || | || | |||| | ||||| ||||| ||||| ||| || |||| | ||| Sbjct 5751104 CTGGCTTCCAAGGCGCCATAGTAAATGGTTTCGAATATCTGCTGATTCAAAAGACCGGCT 5751163 Query 244445 TTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCG 244504 | ||| | | |||| | ||| | || ||| | || || | |||||| | || Sbjct 5751164 TCTTCGCTTTCGTACGGGAAACGCATGAGAATCAAGGCATCAGCGAATCCCTGAATACCA 5751223 Query 244505 ATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTG 244564 ||||| | ||| | ||| | | ||||| | | || || |||| ||| ||| ||||| Sbjct 5751224 ATGCCCACGGGACGGTGCCTCAAATTGGACTTCCTTGCCTCCGGCAGGGGATAATAGTTG 5751283 Query 244565 CCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGA 244624 || || | |||||| || || ||| | || | ||| || ||| || | Sbjct 5751284 ATATCAATTATCTTGTTTAGATTTTTGGTAACTATCTTGGTGACTTCCTTGAGCTTCTTA 5751343 Query 244625 AAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACG 244684 || || ||| | || ||||| | || ||| ||||||||||| | Sbjct 5751344 AAATCATACGTCT-----TCTCCGGCG----------TGACGAACATGTTGAGGGCGATG 5751388 Query 244685 CTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAG 244744 ||||| ||||||||| || | ||| |||| || || | || || || ||||| Sbjct 5751389 GAGGCCAAGTTGCAGACTGCAATCTCATCCGGTGAGGAATATTCAACGATTTCCGTGCAC 5751448 Query 244745 AGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCC 244804 | ||| ||||||||||||||||||| | ||| || ||| ||| |||||| |||||| Sbjct 5751449 AAGTTGCTGCACTTGATGGTGCCCACATTCTGCTGGTTGCTCTTCCTGTTGCAAGCGTCC 5751508 Query 244805 TTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGG 244864 ||| |||||||| | || |||||||| | || || | | || | ||| ||| Sbjct 5751509 TTGAAGAGCATGTACGGATTTCCGGTCTCCACTTGCGCCTCAATGATGGCAAACCACAGG 5751568 Query 244865 TCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCC 244924 |||||| ||||| | | ||| |||||| |||||| |||||| Sbjct 5751569 GATTGAGCCTTAACCGTTCGGTTGGCCCGACCCTCTTGCTCGTATTTCTCGTACAGCTTT 5751628 Query 244925 TCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTC 244984 ||||| || |||||| || |||| || || || ||| ||||||||||| | Sbjct 5751629 TCGAATTCATCGCCCCACACTTCGTGGAGACCAGGACACTTGTGGGGGCACATGAGCGAC 5751688 Query 244985 CACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAG 245044 || || ||| | ||| || | | ||||||||| ||||| ||||| ||||| | || Sbjct 5751689 CAATCACCGTTGGCCTCAACGCGTTTCATGAAGAGATCGGGTATCCACAGGGCGTAAAAC 5751748 Query 245045 AGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAG 245104 || || | | | | ||| || ||| ||||||||| |||| |||| || |||||| Sbjct 5751749 AGATCGCGTGCGCGATTCTCTTCTTTGCCCGTGTTCTTCTTCAGTTCCAGGAACTCAAAG 5751808 Query 245105 ACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCC 245164 || || ||||||||| |||| || | || | ||| ||||| |||||| ||||||| Sbjct 5751809 ACATCCGAGTGCCAGGGTTCCAAATAAATGGCAAAGGCACCGGGACGCTTGCCGCCTCCC 5751868 Query 245165 TGGTCCAC 245172 || ||||| Sbjct 5751869 TGATCCAC 5751876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944165311740560