Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18]
14,731 sequences; 166,592,095 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq1557 331 2e-85
seq1555 320 3e-82
>seq1557
Length=14215200
Score = 331 bits (366), Expect = 2e-85
Identities = 573/820 (70%), Gaps = 21/820 (3%)
Strand=Plus/Minus
Query 42335 CTGGACCGCCGAGGAGATTGACCTGGCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGA 42394
|||||||| ||||||| | || || |||||||| | | |||| ||| | ||||
Sbjct 5422471 CTGGACCGTCGAGGAGGTGGATTTGTCCAAGGACCTTACTGACTGG----CACCGCCTGA 5422416
Query 42395 -GAACGAAAAGTT---TTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCA 42450
| |||| || |||| || || | ||||||||||||||||||||||| ||||
Sbjct 5422415 AGGACGACGAGCGCCATTTCATCTCGCACGTGCTGGCCTTCTTCGCCGCCTCTGATGGCA 5422356
Query 42451 TAGTCAATGAGAACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCT 42510
| || || |||||||||| | |||| | ||||||||| | ||||| || |
Sbjct 5422355 TCGTAAACGAGAACCTGGTGGAGCGCTTCAGTCAGGAGGTGCAGATCACGGAGGCACGAT 5422296
Query 42511 GCTTCTACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGC 42570
||||||||||||||||||| ||||| |||||||||||||| ||| ||||| ||
Sbjct 5422295 GCTTCTACGGCTTCCAGATCGCCATGGAGAACGTGCACTCGGAGATGTACAGTGTTTTGA 5422236
Query 42571 TCAACACGTACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGA 42630
|| |||| ||||||| |||||| | |||| | |||||||| || || || ||||
Sbjct 5422235 TCGACACTTACATCCGGGATCCACACCAGCGAGAGTACCTGTTCAACGCTATCGAAACGA 5422176
Query 42631 TGCC--CTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGAC-G 42687
|||| ||| | ||| ||||| |||||||| || ||||||| | | | | |
Sbjct 5422175 TGCCGGCTG--TGAAGCGCAAGGCAGACTGGGCCCTGTCCTGGATC-TCATCCAAGTCGG 5422119
Query 42688 CAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCG 42747
| | ||||| ||| | | | |||||| ||||||| |||||||| |||||| |||
Sbjct 5422118 CCAATTTCGGGGAGCGCATCATCGCCTTTGCCGCCGTGGAGGGCATTTTCTTCAGCGGCA 5422059
Query 42748 CCTTCGCCTCCATCTTCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCG 42806
|||||||||||| |||||||| ||| || ||| | |||||| ||| | ||||||||
Sbjct 5422058 GCTTCGCCTCCATTTTCTGGCTTAAGAAGCGCGGTCT-GATGCCTGGATTGACCTTCTCC 5422000
Query 42807 AACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCG 42866
||||| || ||| | |||||||| |||| | ||||||||| || ||||| |
Sbjct 5421999 AACGAGCTGATCTCTCGCGACGAGGGCTTGCACTGCGACTTTGCCGTGCTGATGTTCCAG 5421940
Query 42867 AGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTG 42926
||||| ||| ||| | ||||| || | |||||| || || |||
Sbjct 5421939 ---CACCTGGTGCAGCGACCCAAGCGCGAGCGCATCATCGAGATCATCCGCGACGCGGTG 5421883
Query 42927 GAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCAC 42986
| || ||| ||||||||||||| | | |||||||| || |||||||||| |
Sbjct 5421882 GCCATAGAGCAGGAGTTCCTCACCGATGCCCTGCCCGTCAATTTGATCGGCATGAATTGC 5421823
Query 42987 GACCTCATGTGCAAGTACATCCAGTACGTCGCCGACCATCTCCT-GTGCCAGATGGGTCT 43045
||||| |||| | ||||||| ||| ||| || |||| | | || ||| || |||| |
Sbjct 5421822 GACCTGATGTCCCAGTACATTGAGTTCGTAGCGGACCGTTTGCTCGTG-GAGTTGGGCGT 5421764
Query 43046 CAGCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGG 43105
| |||||||||| ||| || |||| ||||||| || ||| |||| ||
Sbjct 5421763 TGGAAAGATCTACAACACCAAAAACCCATTTAACTTCATGGAGATGATATCGCTGGACGG 5421704
Query 43106 CAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145
||||||||||||||||||||| || || || ||||||
Sbjct 5421703 AAAGACCAACTTTTTCGAGAAGAAGGTGGCGGAGTACCAG 5421664
>seq1555
Length=7220098
Score = 320 bits (354), Expect = 3e-82
Identities = 949/1448 (66%), Gaps = 58/1448 (4%)
Strand=Plus/Plus
Query 243736 CACGCTGAACTGGACGGG-TGCGACGGCGGCCTTGGTCCTCAGGTAGTACATGCCGGTCT 243794
|||| ||||||| | || | || | || | |||||| | ||| |||||||| ||||| |
Sbjct 5750476 CACGGTGAACTGAATGGCATTCG-CAGCTGGCTTGGTGCGCAGATAGTACATTCCGGTTT 5750534
Query 243795 TGAGTCCACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCTTTG 243854
| || || ||||| || | ||| |||| |||||||| | ||| || ||||
Sbjct 5750535 TAAGACCTGCTTTCCAGGAGTAAAAGTGTATGGAAGTCAGCTT-TCCAT----AG-TTTG 5750588
Query 243855 GGTCGTCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCT 243914
| ||| || | | | ||||| ||||| ||||| || | ||| | | || |
Sbjct 5750589 GCTCGGCCAC------ATGTATGTTGAACGACTGACTCTGATCTATGAACGCACCACGAT 5750642
Query 243915 CTGCGGCCATGGTGATGAGGTCCTT--CTGAGATATCTCATACGCCGTCTTGTAGATGGG 243972
| |||||||| | || | ||| ||||||| || || || |||||| || | |
Sbjct 5750643 CGGCGGCCATTTTAATCGTGGACTTGACTGAGATTTCCCACAC--CGTCTTATACA-GAT 5750699
Query 243973 CTTG-AGGTGCTCGGGGAACCCTTCGATGTTCTGCACCGAGCCCTTG-TGGACGATGAGC 244030
|| | | | || ||||| || ||||| || | ||| ||| || |||| |||| |
Sbjct 5750700 CTCGCACCTTCTGGGGGATGGTCTCAATGTTTTGAATCGATCCCCTGCTGGAT-ATGATC 5750758
Query 244031 TGGGTGCGCATGTTATCGTTCCACAGGCCCAAGCGCTCC---AGCGCCTCG-ACCAGGTG 244086
||| | ||||| |||| ||||| | ||| |||| || | | || | || ||
Sbjct 5750759 TGGTTCTTCATGTCGTCGTCCCACAAGTCCA---GCTCGGTTAG-GTCGCGCAACAAATG 5750814
Query 244087 CCTGTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAG 244146
||| |||||||| || || || ||||| || || || ||| | ||| || ||
Sbjct 5750815 ATGGTTGACCACCTGGAATTCGCCGGACAGAACTCGCCGGGTGTATATGTTCGTGGTGTA 5750874
Query 244147 CGGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGA 244206
||||||| | || ||||||||| |||||| ||||| ||||| |||||||| |
Sbjct 5750875 GGGCTCGAAGGATTCATTGTTGCCCATTATCTGAGCCGTAGATGCAGTGGGCATGGGAGC 5750934
Query 244207 CACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTC--TGAGCTCGTTCCAG 244264
|| ||||| ||||| || |||||| ||| ||| || || | | | | ||||
Sbjct 5750935 AACGAGCAGGGAGTTCCGGACACCGTGCTTCTTAATG--GACTCCTTCAATTTCTGCCAG 5750992
Query 244265 TCCCACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCC 244324
||||||| | || | ||| | |||||||||| |||||| | ||
Sbjct 5750993 TCCCACAGGTTCGTTGGCACCTTGT---------CCCACATGTCGTACTGCAAAATTCCT 5751043
Query 244325 TTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAG 244384
||||| || ||||||||||||||||| ||| | ||| ||| ||||||||| | |||
Sbjct 5751044 TTGCTCACCGGGCTGCCCTCGTAGGTTTCGTATGCACCTTCGGTCTGGGCCAGTTCGCAG 5751103
Query 244385 CTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCC 244444
|| | || | |||| | ||||| ||||| ||||| ||| || |||| | |||
Sbjct 5751104 CTGGCTTCCAAGGCGCCATAGTAAATGGTTTCGAATATCTGCTGATTCAAAAGACCGGCT 5751163
Query 244445 TTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCG 244504
| ||| | | |||| | ||| | || ||| | || || | |||||| | ||
Sbjct 5751164 TCTTCGCTTTCGTACGGGAAACGCATGAGAATCAAGGCATCAGCGAATCCCTGAATACCA 5751223
Query 244505 ATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTG 244564
||||| | ||| | ||| | | ||||| | | || || |||| ||| ||| |||||
Sbjct 5751224 ATGCCCACGGGACGGTGCCTCAAATTGGACTTCCTTGCCTCCGGCAGGGGATAATAGTTG 5751283
Query 244565 CCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGA 244624
|| || | |||||| || || ||| | || | ||| || ||| || |
Sbjct 5751284 ATATCAATTATCTTGTTTAGATTTTTGGTAACTATCTTGGTGACTTCCTTGAGCTTCTTA 5751343
Query 244625 AAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACG 244684
|| || ||| | || ||||| | || ||| ||||||||||| |
Sbjct 5751344 AAATCATACGTCT-----TCTCCGGCG----------TGACGAACATGTTGAGGGCGATG 5751388
Query 244685 CTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAG 244744
||||| ||||||||| || | ||| |||| || || | || || || |||||
Sbjct 5751389 GAGGCCAAGTTGCAGACTGCAATCTCATCCGGTGAGGAATATTCAACGATTTCCGTGCAC 5751448
Query 244745 AGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCC 244804
| ||| ||||||||||||||||||| | ||| || ||| ||| |||||| ||||||
Sbjct 5751449 AAGTTGCTGCACTTGATGGTGCCCACATTCTGCTGGTTGCTCTTCCTGTTGCAAGCGTCC 5751508
Query 244805 TTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGG 244864
||| |||||||| | || |||||||| | || || | | || | ||| |||
Sbjct 5751509 TTGAAGAGCATGTACGGATTTCCGGTCTCCACTTGCGCCTCAATGATGGCAAACCACAGG 5751568
Query 244865 TCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCC 244924
|||||| ||||| | | ||| |||||| |||||| ||||||
Sbjct 5751569 GATTGAGCCTTAACCGTTCGGTTGGCCCGACCCTCTTGCTCGTATTTCTCGTACAGCTTT 5751628
Query 244925 TCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTC 244984
||||| || |||||| || |||| || || || ||| ||||||||||| |
Sbjct 5751629 TCGAATTCATCGCCCCACACTTCGTGGAGACCAGGACACTTGTGGGGGCACATGAGCGAC 5751688
Query 244985 CACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAG 245044
|| || ||| | ||| || | | ||||||||| ||||| ||||| ||||| | ||
Sbjct 5751689 CAATCACCGTTGGCCTCAACGCGTTTCATGAAGAGATCGGGTATCCACAGGGCGTAAAAC 5751748
Query 245045 AGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAG 245104
|| || | | | | ||| || ||| ||||||||| |||| |||| || ||||||
Sbjct 5751749 AGATCGCGTGCGCGATTCTCTTCTTTGCCCGTGTTCTTCTTCAGTTCCAGGAACTCAAAG 5751808
Query 245105 ACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCC 245164
|| || ||||||||| |||| || | || | ||| ||||| |||||| |||||||
Sbjct 5751809 ACATCCGAGTGCCAGGGTTCCAAATAAATGGCAAAGGCACCGGGACGCTTGCCGCCTCCC 5751868
Query 245165 TGGTCCAC 245172
|| |||||
Sbjct 5751869 TGATCCAC 5751876
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 944165311740560
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