Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18] 14,731 sequences; 166,592,095 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq1557 134 2e-26 seq1551 107 2e-18 >seq1557 Length=14215200 Score = 134 bits (148), Expect = 2e-26 Identities = 264/384 (69%), Gaps = 6/384 (2%) Strand=Plus/Plus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATAT--TCTCC 125815 ||| ||| | ||| ||||||||| ||||| ||||| ||||||| || ||||| ||||| Sbjct 5421667 GTACTCCGCCACCTTCTTCTCGAAAAAGTTGGTCTTTCCGTCCA-GC-GATATCATCTCC 5421724 Query 125816 ATAAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAGGAGA 125875 || || | ||||||||| || | ||| | || || || || | || ||| | | Sbjct 5421725 ATGAAGTTAAATGGGTTTTTGGTGTTGTAGATCTTTCCAACGCCCAACTCCACGAGCAAA 5421784 Query 125876 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTA 125935 || |||| ||| |||||||||||| |||||| || | ||||| ||||| | || Sbjct 5421785 CGGTCCGCTACGAACTCAATGTACTGGGACATCAGGTCGCAATTCATGCCGATCAAATTG 5421844 Query 125936 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGCG 125995 || || || || || |||| ||| ||| || |||| || || || | ||| || Sbjct 5421845 ACGGGCAGGGCATCGGTGAGGAACTCCTGCTCTATGGCCACCGCGTCGCGGATGATCTCG 5421904 Query 125996 TGAATGGTGTCCACCCCAGGTCTATTGCGCAAAGT-CTTGAAGAGTTCCACGGCAAACTC 126054 ||| || | |||| ||| | | || || ||| | ||||||||| || Sbjct 5421905 ATGATGCGCTCGCGCTTGGGTC-GCTGCACCAGGTGCTGGAACATCAGCACGGCAAAGTC 5421963 Query 126055 TTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAG 126114 ||| | |||||||| || ||||| || || || |||||| || ||| ||||| || Sbjct 5421964 GCAGTGCAAGCCCTCGTCGCGAGAGATCAGCTCGTTGGAGAAGGTCAATCCAGGCATCAG 5422023 Query 126115 ACCCCGCTTCTTCAACCAGAAAAT 126138 ||| |||||||| | ||||||||| Sbjct 5422024 ACCGCGCTTCTTAAGCCAGAAAAT 5422047 >seq1551 Length=3727775 Score = 107 bits (118), Expect = 2e-18 Identities = 170/241 (71%), Gaps = 2/241 (1%) Strand=Plus/Plus Query 171907 ATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACACGGTTCAAGGAGATTGATATT 171966 ||||||||| ||| | | || || ||||||||||| | || ||||| ||||| || || Sbjct 3065294 ATCTTTGCCTCCCGTCAAGCGGGTACCAAATTGACCGCGTGGCTCAAGCAGATTAATGTT 3065353 Query 171967 GTTTGAACCCATGTAGTCATTGGCCAACTTGACAATCGT-ATCCGCGAGGGAGACTTCAC 172025 ||| | ||||| | | | ||||| || || || || ||| || ||||| || || | Sbjct 3065354 GTTCGCACCCACAAAATTCTGGGCCAGATTTACGATTGTCATCTGC-AGGGATACCTCTC 3065412 Query 172026 CGTGATGGTAGGCCGACTTGTCCGCGACATACGCCGCCAACTGTGCCACCTTCATCTCAT 172085 |||| |||||||||||| | ||||| || | | | | ||| |||||||||| |||| Sbjct 3065413 CGTGGTGGTAGGCCGACATCTCCGCCACTGATCCGGATAGCTGGGCCACCTTCACCTCAC 3065472 Query 172086 CCTTGAGGTTCTTGTGGAAGCACGCATACATGACCTTTCTCTGTGAAGGCTTGAGGCCGT 172145 |||| ||| | | ||| || | |||| ||||| | ||| ||||| | ||| | Sbjct 3065473 GCTTGTCATTCCTTTTGAAACAAGTGAACATCACCTTCCGCTGACCCGGCTTCAAGCCAT 3065532 Query 172146 C 172146 | Sbjct 3065533 C 3065533 Score = 84.2 bits (92), Expect = 3e-11 Identities = 142/203 (70%), Gaps = 7/203 (3%) Strand=Plus/Plus Query 172777 AGCATCGCGGACATTTTTACACTTCCCACGGAGAGGGAACACACCGTAGTGATCACGACC 172836 ||| || || |||||| | || || | || |||||||| ||||||||||| || || Sbjct 3066203 AGCTTCCCGCACATTTAGAAGTTTACCCCTAAGCGGGAACACGCCGTAGTGATCTCGTCC 3066262 Query 172837 AACCACAGAAAGACCAGCAACTGCGAGGGTCTTCGCGGAATCACCCTCCGTCACGATGAG 172896 | ||| ||||||| || || | | ||| || || || |||||||| | |||||| Sbjct 3066263 GATCACGCCCAGACCAGATACGGCTAATGACTTGGCTGAGTCTCCCTCCGTGAGGATGAG 3066322 Query 172897 CGTACACTTTCCAGATTGTGCCGTC--CCCGCCTTGTTCGCATCGTCCAACTTGGGAATA 172954 || || || ||| || | || ||||||| ||| || || |||| ||||||||| Sbjct 3066323 GGTGCAATTAATAGA--GTTCTTTCCACCCGCCTCGTTAGCGTCTTCCAGCTTGGGAATG 3066380 Query 172955 CCAGTAATTTTG---GACTTGCG 172974 || | || ||| |||||||| Sbjct 3066381 CCCTTGATCTTGCTTGACTTGCG 3066403 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597243604801480