Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18]
14,731 sequences; 166,592,095 total letters
Query= NC_010191.2
Length=186713
Score E
Sequences producing significant alignments: (Bits) Value
seq1557 134 2e-26
seq1551 107 2e-18
>seq1557
Length=14215200
Score = 134 bits (148), Expect = 2e-26
Identities = 264/384 (69%), Gaps = 6/384 (2%)
Strand=Plus/Plus
Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATAT--TCTCC 125815
||| ||| | ||| ||||||||| ||||| ||||| ||||||| || ||||| |||||
Sbjct 5421667 GTACTCCGCCACCTTCTTCTCGAAAAAGTTGGTCTTTCCGTCCA-GC-GATATCATCTCC 5421724
Query 125816 ATAAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAGGAGA 125875
|| || | ||||||||| || | ||| | || || || || | || ||| | |
Sbjct 5421725 ATGAAGTTAAATGGGTTTTTGGTGTTGTAGATCTTTCCAACGCCCAACTCCACGAGCAAA 5421784
Query 125876 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTA 125935
|| |||| ||| |||||||||||| |||||| || | ||||| ||||| | ||
Sbjct 5421785 CGGTCCGCTACGAACTCAATGTACTGGGACATCAGGTCGCAATTCATGCCGATCAAATTG 5421844
Query 125936 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGCG 125995
|| || || || || |||| ||| ||| || |||| || || || | ||| ||
Sbjct 5421845 ACGGGCAGGGCATCGGTGAGGAACTCCTGCTCTATGGCCACCGCGTCGCGGATGATCTCG 5421904
Query 125996 TGAATGGTGTCCACCCCAGGTCTATTGCGCAAAGT-CTTGAAGAGTTCCACGGCAAACTC 126054
||| || | |||| ||| | | || || ||| | ||||||||| ||
Sbjct 5421905 ATGATGCGCTCGCGCTTGGGTC-GCTGCACCAGGTGCTGGAACATCAGCACGGCAAAGTC 5421963
Query 126055 TTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAG 126114
||| | |||||||| || ||||| || || || |||||| || ||| ||||| ||
Sbjct 5421964 GCAGTGCAAGCCCTCGTCGCGAGAGATCAGCTCGTTGGAGAAGGTCAATCCAGGCATCAG 5422023
Query 126115 ACCCCGCTTCTTCAACCAGAAAAT 126138
||| |||||||| | |||||||||
Sbjct 5422024 ACCGCGCTTCTTAAGCCAGAAAAT 5422047
>seq1551
Length=3727775
Score = 107 bits (118), Expect = 2e-18
Identities = 170/241 (71%), Gaps = 2/241 (1%)
Strand=Plus/Plus
Query 171907 ATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACACGGTTCAAGGAGATTGATATT 171966
||||||||| ||| | | || || ||||||||||| | || ||||| ||||| || ||
Sbjct 3065294 ATCTTTGCCTCCCGTCAAGCGGGTACCAAATTGACCGCGTGGCTCAAGCAGATTAATGTT 3065353
Query 171967 GTTTGAACCCATGTAGTCATTGGCCAACTTGACAATCGT-ATCCGCGAGGGAGACTTCAC 172025
||| | ||||| | | | ||||| || || || || ||| || ||||| || || |
Sbjct 3065354 GTTCGCACCCACAAAATTCTGGGCCAGATTTACGATTGTCATCTGC-AGGGATACCTCTC 3065412
Query 172026 CGTGATGGTAGGCCGACTTGTCCGCGACATACGCCGCCAACTGTGCCACCTTCATCTCAT 172085
|||| |||||||||||| | ||||| || | | | | ||| |||||||||| ||||
Sbjct 3065413 CGTGGTGGTAGGCCGACATCTCCGCCACTGATCCGGATAGCTGGGCCACCTTCACCTCAC 3065472
Query 172086 CCTTGAGGTTCTTGTGGAAGCACGCATACATGACCTTTCTCTGTGAAGGCTTGAGGCCGT 172145
|||| ||| | | ||| || | |||| ||||| | ||| ||||| | ||| |
Sbjct 3065473 GCTTGTCATTCCTTTTGAAACAAGTGAACATCACCTTCCGCTGACCCGGCTTCAAGCCAT 3065532
Query 172146 C 172146
|
Sbjct 3065533 C 3065533
Score = 84.2 bits (92), Expect = 3e-11
Identities = 142/203 (70%), Gaps = 7/203 (3%)
Strand=Plus/Plus
Query 172777 AGCATCGCGGACATTTTTACACTTCCCACGGAGAGGGAACACACCGTAGTGATCACGACC 172836
||| || || |||||| | || || | || |||||||| ||||||||||| || ||
Sbjct 3066203 AGCTTCCCGCACATTTAGAAGTTTACCCCTAAGCGGGAACACGCCGTAGTGATCTCGTCC 3066262
Query 172837 AACCACAGAAAGACCAGCAACTGCGAGGGTCTTCGCGGAATCACCCTCCGTCACGATGAG 172896
| ||| ||||||| || || | | ||| || || || |||||||| | ||||||
Sbjct 3066263 GATCACGCCCAGACCAGATACGGCTAATGACTTGGCTGAGTCTCCCTCCGTGAGGATGAG 3066322
Query 172897 CGTACACTTTCCAGATTGTGCCGTC--CCCGCCTTGTTCGCATCGTCCAACTTGGGAATA 172954
|| || || ||| || | || ||||||| ||| || || |||| |||||||||
Sbjct 3066323 GGTGCAATTAATAGA--GTTCTTTCCACCCGCCTCGTTAGCGTCTTCCAGCTTGGGAATG 3066380
Query 172955 CCAGTAATTTTG---GACTTGCG 172974
|| | || ||| ||||||||
Sbjct 3066381 CCCTTGATCTTGCTTGACTTGCG 3066403
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 597243604801480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |