Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18] 14,731 sequences; 166,592,095 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq1558 86.0 7e-12 seq1555 86.0 7e-12 seq1553 82.4 8e-11 >seq1558 Length=21120651 Score = 86.0 bits (94), Expect = 7e-12 Identities = 68/81 (84%), Gaps = 2/81 (2%) Strand=Plus/Minus Query 57005 TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 57064 |||||| || | | ||| |||||| ||||||||||||||||||||| ||||| ||||| Sbjct 20716429 TTCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCAC 20716370 Query 57065 TATACTACCGAGGA--TTGAA 57083 ||||||| |||||| ||||| Sbjct 20716369 TATACTATCGAGGACGTTGAA 20716349 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | ||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 5417758 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 5417699 Query 57066 ATACTACCGAGGAT 57079 |||||| ||||||| Sbjct 5417698 ATACTATCGAGGAT 5417685 >seq1555 Length=7220098 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 57005 TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 57064 |||||| || | | ||| |||||| ||||||||||||||||||||| ||||| ||||| Sbjct 4164186 TTCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCAC 4164245 Query 57065 TATACTACCGAGGAT 57079 ||||||| ||||||| Sbjct 4164246 TATACTATCGAGGAT 4164260 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 57005 TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 57064 |||||| || | | ||| |||||| ||||||||||||||||||||| ||||| ||||| Sbjct 4165858 TTCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCAC 4165917 Query 57065 TATACTACCGAGGAT 57079 ||||||| ||||||| Sbjct 4165918 TATACTATCGAGGAT 4165932 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | ||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 3968842 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 3968901 Query 57066 ATACTACCGAGGAT 57079 |||||| ||||||| Sbjct 3968902 ATACTATCGAGGAT 3968915 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | ||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 4028670 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 4028611 Query 57066 ATACTACCGAGGAT 57079 |||||| ||||||| Sbjct 4028610 ATACTATCGAGGAT 4028597 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | ||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 4099643 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 4099584 Query 57066 ATACTACCGAGGAT 57079 |||||| ||||||| Sbjct 4099583 ATACTATCGAGGAT 4099570 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | ||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 4158643 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 4158584 Query 57066 ATACTACCGAGGA-TTGA 57082 |||||| |||||| |||| Sbjct 4158583 ATACTATCGAGGACTTGA 4158566 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 57005 TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 57064 |||||| || | | ||| |||||| ||||||||||||||||||||| ||||| ||||| Sbjct 4162880 TTCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCAC 4162821 Query 57065 TATACTACCGAGGA 57078 ||||||| |||||| Sbjct 4162820 TATACTATCGAGGA 4162807 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 57005 TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 57064 |||||| || | | ||| |||||| ||||||||||||||||||||| ||||| ||||| Sbjct 4165572 TTCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCAC 4165513 Query 57065 TATACTACCGAGGA 57078 ||||||| |||||| Sbjct 4165512 TATACTATCGAGGA 4165499 Score = 82.4 bits (90), Expect = 8e-11 Identities = 54/60 (90%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 57020 AATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGAT 57079 ||| |||||| ||||||||||||||||||||| ||||| |||||||||||| ||||||| Sbjct 4028402 AATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTATACTATCGAGGAT 4028461 Score = 82.4 bits (90), Expect = 8e-11 Identities = 54/60 (90%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 57020 AATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGAT 57079 ||| |||||| ||||||||||||||||||||| ||||| |||||||||||| ||||||| Sbjct 4163904 AATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTATACTATCGAGGAT 4163845 >seq1553 Length=5866729 Score = 82.4 bits (90), Expect = 8e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | ||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 3321339 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 3321280 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 3321279 ATACTATCGAGGA 3321267 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543112774153040