Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18] 14,731 sequences; 166,592,095 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq1555 224 1e-53 >seq1555 Length=7220098 Score = 224 bits (248), Expect = 1e-53 Identities = 874/1365 (64%), Gaps = 39/1365 (3%) Strand=Plus/Minus Query 93927 GCCACAGATGTCTTCGTGTTTCCTGATGACGAACAAGGCCGACTCCATCTCCGGAATTTT 93986 ||| ||| |||| ||||||||||| |||| | | |||||||||||| || ||||| Sbjct 5752096 GCCGCAGTTGTCGTCGTGTTTCCTTCTGACCATGACAGCCGACTCCATCGAGGGCATTTT 5752037 Query 93987 CGACAGCCTCAAGGACTGTGCGACC--ATCTCAAAATACGCGGGGGGAATCGGGATCAGT 94044 | | | || | || |||| | ||||| || | ||| || || ||||| ||| Sbjct 5752036 CAA--GTCTGTGGAACAATGCGCCATGATCTCCAAGTCCGCCGGTGGCATCGGACTCAAC 5751979 Query 94045 GTCCACGACGTACGTGCCAGGGGTTCCTACATCCGCGGTACCAATGGCACCTCCAACGGC 94104 || || | | ||||| | ||| ||| || |||| || ||||| || ||||| || Sbjct 5751978 GTGCATTGCATTCGTGCAAAGGGCACCTCGATTTGCGGCACAAATGGTACTTCCAATGGG 5751919 Query 94105 CTCGTCCCTATGCTCCGGGTCTTCAACAACGCGGCGCGCTACGTGGACCAGGGTGGTGGG 94164 | || || ||||| |||||||||| || | ||| || || ||||| ||||| || || Sbjct 5751918 TTGGTTCCCATGCTGAGGGTCTTCAATAATGTGGCACGTTATGTGGATCAGGGAGGCGGC 5751859 Query 94165 AGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTC 94224 | | | ||| | || || | ||| | || ||||||||| |||| || | ||| Sbjct 5751858 AAGCGTCCCGGTGCCTTTGCCATTTATTTGGAACCCTGGCACTCGGATGTCTTTGAGTTC 5751799 Query 94225 ATCGACCTGCGAAAGAACCACGGCAACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCT 94284 | || ||| |||||| ||||| || | | | || | || || || ||||| Sbjct 5751798 CTGGAACTGAAGAAGAACACGGGCAAAGAAGAGAATCGCGCACGCGATCTGTTTTACGCC 5751739 Query 94285 CTCTGGGTGCCAGACCTTTTTATGAAACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTT 94344 || ||| | || || || || ||||||||||| ||| ||| | ||| || | Sbjct 5751738 CTGTGGATACCCGATCTCTTCATGAAACGCGTTGAGGCCAACGGTGATTGGTCGCTCATG 5751679 Query 94345 TGTCCCAATGAATGTCCCGGACTGTCCGACGTTTGTGGATCGCGTTTTGAAGACTTGTAT 94404 || ||| | | ||||| || || ||| || || || || ||| | |||| Sbjct 5751678 TGCCCCCACAAGTGTCCTGGTCTCCACGAAGTGTGGGGCGATGAATTCGAAAAGCTGTAC 5751619 Query 94405 GCTCGTTACGAATCGCAGGGCAAGGCCA---GGAAGGTTATGGATGCTAGGAAGCTGTGG 94461 | ||||| |||| ||||| | | ||||| | ||| |||||| Sbjct 5751618 GAGAAATACGAGCAAGAGGGTCGGGCCAACCGAACGGTTA---AGGCTCAATCCCTGTGG 5751562 Query 94462 GATCAGATCGTGGACGTACAGGTGGAGACGGGTACGCCCTACATCTTGTTCAAGGACTCT 94521 | ||| | || | || |||||||| || | || ||||| | ||||||||| || Sbjct 5751561 TTTGCCATCATTGAGGCGCAAGTGGAGACCGGAAATCCGTACATGCTCTTCAAGGACGCT 5751502 Query 94522 GTCAACGCCAAGTCCAACCAGCAGCACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACC 94581 |||| ||| |||||||||| | | || |||||| || || ||||||| Sbjct 5751501 TGCAACAGGAAGAGCAACCAGCAGAATGTGGGCACCATCAAGTGCAGCAACTTGTGCACG 5751442 Query 94582 GAGATTGTCGAGTATACTTCTCCGGACGAGATTGCTGTGTGTAACCTGGGCTCCATCAAC 94641 || || || || ||| | || ||||| |||||||| || || ||| ||| ||||||| | Sbjct 5751441 GAAATCGTTGAATATTCCTCACCGGATGAGATTGCAGTCTGCAACTTGGCCTCCATCGCC 5751382 Query 94642 CTGTCCACTTTCGTGCGAGATGCCTACACGTCTACTGCTTCGTTCGATCTGGAGGAGCTT 94701 || || ||||| |||| | ||| ||| | || |||| Sbjct 5751381 CTCAACATGTTCGT------------CACGCCGGAGAAGACGTATGATTTTAAGAAGCTC 5751334 Query 94702 GTGAACTTCGCGGGAAGGATGGT---CTTGAACCTGAACAGGGTAATCGACAAGAACTTC 94758 | | || | | ||| || | || || |||| | |||| || | |||| Sbjct 5751333 AAGGAAGTCAC---CAAGATAGTTACCAAAAATCTAAACAAGATAATTGATATCAACTAT 5751277 Query 94759 TACCCCGTCCCGGAGGCGGAGAACTCAAACCTGAAGCATCGGCCCATCGGCATCGGCGTC 94818 || ||| | |||||||| ||| || || ||| ||| || ||| | ||||| || | Sbjct 5751276 TATCCCCTGCCGGAGGCAAGGAAGTCCAATTTGAGGCACCGTCCCGTGGGCATTGGTATT 5751217 Query 94819 CAGGGTTTCGCGGACGCGCTGGTGATGATGCGTCTGCCCTACGACTCTGTCGACGCGGCG 94878 ||||| ||||| || || || | | |||||| | || ||||| | || || | Sbjct 5751216 CAGGGATTCGCTGATGCCTTGATTCTCATGCGTTTCCCGTACGAAAGCGAAGAAGCCGGT 5751157 Query 94879 GGTTTGAATTTGAACATATTCGAAAGCATTTATTACGGGGCCAT-GAAACAATCCGTCCA 94937 ||||||| | | |||||||||| |||||| || || ||| | ||| | | | | | Sbjct 5751156 CTTTTGAATCAGCAGATATTCGAAACCATTTACTATGGCGCCTTGGAAGCCAGCTGCGAA 5751097 Query 94938 CTTGGCCAGATCGGACGGCGGGCCACACGAATCGTTCCGCGGATCGCCCTTGGAAC-AGG 94996 || | ||||| || | || || ||||| | | || || |||| || | | | Sbjct 5751096 CTGGCCCAGACCGAA----GGTGCATACGAAAC-CTACGAGGGCAGCCCGGTGAGCAAAG 5751042 Query 94997 GCATTTTTCAGTTCGACCTCTGGGGTGTGAAGCCCTCGGGTCTGTACGACTGG--GAAGC 95054 | ||||| |||| |||| | |||| | ||| || |||| |||||| ||| Sbjct 5751041 GAATTTTGCAGTACGACATGTGGGACAAGGTGCCAACGAACCTGTGGGACTGGCAGAAAT 5750982 Query 95055 TCTACGCGCTGATGTTATCAAACACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCC 95114 | | | | | ||| || |||||||| ||| | ||||| || || |||||||| Sbjct 5750981 TGAAGGAGTCCA--TTAAGAAGCACGGTGTCCGGAACTCCCTGCTCGTTGCTCCCATGCC 5750924 Query 95115 CACGGCCTCCACGGCGCAGATCCTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAA 95174 ||| || || ||||| ||||| | |||||||| || || ||||| |||| |||| | || Sbjct 5750923 CACTGCATCTACGGCTCAGATAATGGGCAACAATGAATCCTTCGAGCCCTACACCACGAA 5750864 Query 95175 CGTGTACAACAGGCGGGTGCTCGCCGGGGAATTCCCCGTCATCAACAAGCACCTCCTACG 95234 | | |||| | |||| || || |||| ||||||| || ||||| | || | | || Sbjct 5750863 CATATACACCCGGCGAGTTCTGTCCGGCGAATTCCAGGTGGTCAACCATCATTTGTTGCG 5750804 Query 95235 GGACCTGACGTCTCTGGGTGTGTGGGGTGACAAGGTCAAGAACCA 95279 ||||| || |||| |||||| ||| | | |||||||| Sbjct 5750803 CGACCTAACCGAGCTGGACTTGTGGGACGACGACATGAAGAACCA 5750759 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494632102906760