Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18]
14,731 sequences; 166,592,095 total letters
Query= NC_011335.1
Length=119343
Score E
Sequences producing significant alignments: (Bits) Value
seq1554 96.9 3e-15
seq1558 93.3 3e-14
>seq1554
Length=6179234
Score = 96.9 bits (106), Expect = 3e-15
Identities = 140/195 (72%), Gaps = 2/195 (1%)
Strand=Plus/Minus
Query 108448 CAGAACACCATCCCGCAGTGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACACG 108507
||||||||| | | ||||| | ||| ||| | || || ||||| ||||| || |||
Sbjct 4865313 CAGAACACCCTTTACGACTGGGTTCGCGACCACCGAGTCCATCACAAATACTCGGAGACG 4865254
Query 108508 ACGGCCGACCCACACAACGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATG 108567
|| || || ||||||||||||||||| |||| ||||| |||||||| ||||| |||
Sbjct 4865253 GATGCGGATCCCCACAACGCCAACAGGGGATTCTTCTTCTCCCACGTGGGCTGGCTGATG 4865194
Query 108568 ATGACCAAGGACCCCGACGTGATCTCGGC-CGGTCGAAAAATGGACATGACGGACATATA 108626
||| ||| | || || || | ||| | ||||| | || ||||||| |||||
Sbjct 4865193 ATGCTGAAGCATCCGGAGGT-ACTTCGTCGTGGTCGCCAGATCGACATGAGCGACATTCT 4865135
Query 108627 CTCCGATCCGGTGGT 108641
| ||||| |||||
Sbjct 4865134 GGCTGATCCCGTGGT 4865120
Score = 89.7 bits (98), Expect = 4e-13
Identities = 66/77 (86%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 108881 TGGCTCTCGGCGAGGGATGGCACAACTACCACCACGTGTTCCCCTACGACTACAAGGCCG 108940
|||| | ||||||||||||||||||||||||||||||||||||| |||||||| || |
Sbjct 4864714 TGGCCATGGGCGAGGGATGGCACAACTACCACCACGTGTTCCCCTGGGACTACAAAGCAG 4864655
Query 108941 CCGAGTTGGGGAACGAC 108957
| ||| |||| ||| ||
Sbjct 4864654 CTGAGCTGGGCAACTAC 4864638
>seq1558
Length=21120651
Score = 93.3 bits (102), Expect = 3e-14
Identities = 59/64 (92%), Gaps = 0/64 (0%)
Strand=Plus/Minus
Query 108887 TCGGCGAGGGATGGCACAACTACCACCACGTGTTCCCCTACGACTACAAGGCCGCCGAGT 108946
||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||
Sbjct 12895388 TCGGCGAGGGATGGCACAACTACCACCACGTCTTCCCCTGGGACTACAAGGCAGCCGAGC 12895329
Query 108947 TGGG 108950
||||
Sbjct 12895328 TGGG 12895325
Score = 86.0 bits (94), Expect = 5e-12
Identities = 167/245 (68%), Gaps = 4/245 (2%)
Strand=Plus/Minus
Query 108347 TCGGTGTGACGGCCGGCGTCCATCGGATGTGGACCCACAAAGCCTACAAGGCCA--CCGC 108404
|||| | |||||||| || ||||| ||||| | ||||| ||||||||||| | | ||
Sbjct 12896084 TCGGCATCACGGCCGGAGTGCATCGTCTGTGGTCGCACAAGGCCTACAAGGCTAAGCTGC 12896025
Query 108405 CCCGTTCAGGGTGTTCCTGGCGCTTTGCTTCTCGGTGGCAGGACAGAACACCATCCCGCA 108464
| | | | | ||||| ||| ||| || |||| ||||||| |||| | |
Sbjct 12896024 CAC--TGCGCATCTTCCTCATGCTGTGCCAGTCCCTGGCCTTCCAGAACAGCATCTGGGA 12895967
Query 108465 GTGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACACGACGGCCGACCCACACAA 108524
|||| | || ||| | || |||||||||| | | ||||| ||||| || |||||
Sbjct 12895966 GTGGACCCGTGACCACCGTGTGCACCACAAGTTCACCGACACACACGCCGATCCCCACAA 12895907
Query 108525 CGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAAGGACCCCGA 108584
| || | || |||| ||| | ||| |||| ||||| ||| | ||| |||||||
Sbjct 12895906 CTCCCGACGCGGCTTCTTCTTCGCCCACATGGGCTGGCTGATGTGCAAGAAGCACCCCGA 12895847
Query 108585 CGTGA 108589
||||
Sbjct 12895846 TGTGA 12895842
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 381704258778264
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |