Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18] 14,731 sequences; 166,592,095 total letters Query= NC_011335.1 Length=119343 Score E Sequences producing significant alignments: (Bits) Value seq1554 96.9 3e-15 seq1558 93.3 3e-14 >seq1554 Length=6179234 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 108448 CAGAACACCATCCCGCAGTGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACACG 108507 ||||||||| | | ||||| | ||| ||| | || || ||||| ||||| || ||| Sbjct 4865313 CAGAACACCCTTTACGACTGGGTTCGCGACCACCGAGTCCATCACAAATACTCGGAGACG 4865254 Query 108508 ACGGCCGACCCACACAACGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATG 108567 || || || ||||||||||||||||| |||| ||||| |||||||| ||||| ||| Sbjct 4865253 GATGCGGATCCCCACAACGCCAACAGGGGATTCTTCTTCTCCCACGTGGGCTGGCTGATG 4865194 Query 108568 ATGACCAAGGACCCCGACGTGATCTCGGC-CGGTCGAAAAATGGACATGACGGACATATA 108626 ||| ||| | || || || | ||| | ||||| | || ||||||| ||||| Sbjct 4865193 ATGCTGAAGCATCCGGAGGT-ACTTCGTCGTGGTCGCCAGATCGACATGAGCGACATTCT 4865135 Query 108627 CTCCGATCCGGTGGT 108641 | ||||| ||||| Sbjct 4865134 GGCTGATCCCGTGGT 4865120 Score = 89.7 bits (98), Expect = 4e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 108881 TGGCTCTCGGCGAGGGATGGCACAACTACCACCACGTGTTCCCCTACGACTACAAGGCCG 108940 |||| | ||||||||||||||||||||||||||||||||||||| |||||||| || | Sbjct 4864714 TGGCCATGGGCGAGGGATGGCACAACTACCACCACGTGTTCCCCTGGGACTACAAAGCAG 4864655 Query 108941 CCGAGTTGGGGAACGAC 108957 | ||| |||| ||| || Sbjct 4864654 CTGAGCTGGGCAACTAC 4864638 >seq1558 Length=21120651 Score = 93.3 bits (102), Expect = 3e-14 Identities = 59/64 (92%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 108887 TCGGCGAGGGATGGCACAACTACCACCACGTGTTCCCCTACGACTACAAGGCCGCCGAGT 108946 ||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||| Sbjct 12895388 TCGGCGAGGGATGGCACAACTACCACCACGTCTTCCCCTGGGACTACAAGGCAGCCGAGC 12895329 Query 108947 TGGG 108950 |||| Sbjct 12895328 TGGG 12895325 Score = 86.0 bits (94), Expect = 5e-12 Identities = 167/245 (68%), Gaps = 4/245 (2%) Strand=Plus/Minus Query 108347 TCGGTGTGACGGCCGGCGTCCATCGGATGTGGACCCACAAAGCCTACAAGGCCA--CCGC 108404 |||| | |||||||| || ||||| ||||| | ||||| ||||||||||| | | || Sbjct 12896084 TCGGCATCACGGCCGGAGTGCATCGTCTGTGGTCGCACAAGGCCTACAAGGCTAAGCTGC 12896025 Query 108405 CCCGTTCAGGGTGTTCCTGGCGCTTTGCTTCTCGGTGGCAGGACAGAACACCATCCCGCA 108464 | | | | | ||||| ||| ||| || |||| ||||||| |||| | | Sbjct 12896024 CAC--TGCGCATCTTCCTCATGCTGTGCCAGTCCCTGGCCTTCCAGAACAGCATCTGGGA 12895967 Query 108465 GTGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACACGACGGCCGACCCACACAA 108524 |||| | || ||| | || |||||||||| | | ||||| ||||| || ||||| Sbjct 12895966 GTGGACCCGTGACCACCGTGTGCACCACAAGTTCACCGACACACACGCCGATCCCCACAA 12895907 Query 108525 CGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAAGGACCCCGA 108584 | || | || |||| ||| | ||| |||| ||||| ||| | ||| ||||||| Sbjct 12895906 CTCCCGACGCGGCTTCTTCTTCGCCCACATGGGCTGGCTGATGTGCAAGAAGCACCCCGA 12895847 Query 108585 CGTGA 108589 |||| Sbjct 12895846 TGTGA 12895842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381704258778264