Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18] 14,731 sequences; 166,592,095 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq1554 104 2e-17 seq1556 100 2e-16 seq1555 82.4 5e-11 >seq1554 Length=6179234 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || ||||||||||| || || || || |||||||| ||| ||| | | |||| || Sbjct 592527 ACCAAATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCCTCC 592468 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 || || || || ||| | ||||||||||| || || || ||||| |||||||| Sbjct 592467 AACTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGG 592408 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || ||| || || | || || |||||| || || || || || ||||| || Sbjct 592407 ATCTTGGCCTTGACGTTCTCGATGGTATCGGATGGCTCAACCTCCAAAGTGATGGTCTTG 592348 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 || |||||||| || || |||||||||||||| Sbjct 592347 CCGGTCAGAGTCTTAACGAAAATTTGCATATT 592316 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||| |||| | | || || |||||||| || || || || |||||||| ||| Sbjct 592775 TGCCACCGCGCAGACGCAGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGG 592716 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 ||| | | |||| || | || || || ||| | ||||||||||| || || | Sbjct 592715 ACAGAGTGCGTCCGTCCTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGG 592656 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | |||||||||||||| || ||| || || | || || |||||| || | Sbjct 592655 GGATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTATCGGATGGCTCAA 592596 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | || ||||| ||||| || || |||||||| || || || || ||||| Sbjct 592595 CTTCCAAGGTGATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCAT 592547 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||| |||| | | || || |||||||| || || || || |||||||| ||| Sbjct 593231 TGCCACCGCGCAGACGCAGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGG 593172 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 ||| | | |||| || | || || || ||| | ||||||||||| || || | Sbjct 593171 ACAGAGTGCGTCCGTCCTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGG 593112 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | ||||| |||||||| || ||| || ||| | || || |||||| || | Sbjct 593111 GGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTATCGGATGGCTCAA 593052 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | || ||||| ||||| || || |||||||| || || || || ||||| Sbjct 593051 CTTCCAAGGTGATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCAT 593003 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||| |||| | | || || |||||||| || || || || |||||||| ||| Sbjct 593003 TGCCACCGCGCAGACGCAGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGG 592944 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 ||| | | |||| || | || || || ||| | ||||||||||| || || | Sbjct 592943 ACAGAGTGCGTCCGTCCTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGG 592884 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | ||||| |||||||| || ||| || || | || || |||||| || | Sbjct 592883 GGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTATCGGATGGCTCAA 592824 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | || ||||| ||||| || || |||||||| || || || || ||||| Sbjct 592823 CTTCCAAGGTGATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCAT 592775 >seq1556 Length=7591821 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| |||| | | ||| ||||| ||||| || || || || |||||||||||| Sbjct 3893205 CCACCACGCAGACGGAGAACCAAATGGAGGGTTGACTCCTTCTGGATGTTGTAATCGGAC 3893264 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | | ||||||| ||||| ||||||||| | |||| |||||| || || ||| Sbjct 3893265 AGGGTGCGTCCGTCTTCCAATTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGGGGA 3893324 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTAT-TTTCTAC 15128 ||||| |||||||| ||||| || ||| | || || || || | || || || Sbjct 3893325 ATTCCCTCCTTGTCTTGGATTTTAGCCTTCACATTCTCAATGGTGTC-CGATGGCTCAAC 3893383 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || || ||||| || || || || || || || || || |||||| Sbjct 3893384 CTCCAAAGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATA 3893432 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| |||| | | ||| ||||| ||||| || || || || |||||||||||| Sbjct 3893889 CCACCACGCAGACGGAGAACCAAATGGAGGGTTGACTCCTTCTGGATGTTGTAATCGGAC 3893948 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | | ||||||| ||||| ||||||||| | |||| |||||| || || ||| Sbjct 3893949 AGGGTGCGTCCGTCTTCCAATTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGGGGA 3894008 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTAT-TTTCTAC 15128 ||||| |||||||| ||||| || ||| | || || || || | || || || Sbjct 3894009 ATTCCCTCCTTGTCTTGGATTTTAGCCTTCACATTCTCAATGGTGTC-CGATGGCTCAAC 3894067 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || || ||||| || || || || || || || || || |||||| Sbjct 3894068 CTCCAAAGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATA 3894116 Score = 82.4 bits (90), Expect = 5e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| |||| | | ||| || |||||||| || || || || |||||||||||| Sbjct 3892977 CCACCACGCAGACGGAGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGAC 3893036 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | | ||||||| | ||| ||||| ||| | || | |||||| || || | ||| Sbjct 3893037 AGGGTGCGTCCGTCTTCCAGTTGCTTGCCGGCGAAGATGAGACGCTGCTGATC-TGGGGA 3893095 Query 15070 -ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 ||||| ||||| || ||| || || ||| | || || || || |||||| Sbjct 3893096 GATTCCCTCCTTATCCTGAATCTTAGCCTTAACATTCTCGATGGTGTCCGACGGTTCTAC 3893155 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || | || ||||| || || |||| ||| || || || || |||||| Sbjct 3893156 CTCAAGAGTGATGGTCTTTCCGGTCAAAGTCTTCACGAAGATCTGCATA 3893204 >seq1555 Length=7220098 Score = 82.4 bits (90), Expect = 5e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| |||| | | || || || || || || || || || ||||| || || | Sbjct 5837944 CCACCACGCAGGCGGAGCACCAAGTGCAGAGTGGACTCCTTCTGAATGTTATAGTCAGAG 5837885 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | | | ||||| | || ||||||||| | |||| |||||| || || ||| Sbjct 5837884 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGA 5837825 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 |||||||| ||||| ||| ||| ||| ||| |||| |||||||| ||| || Sbjct 5837824 ATTCCTTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTATCCGACGGTTCGACC 5837765 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 || | || ||||| || || || || || || || || || ||||| || Sbjct 5837764 TCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCATCTT 5837715 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357327835962335