Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18] 14,731 sequences; 166,592,095 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq1555 329 3e-85 seq1554 82.4 7e-11 >seq1555 Length=7220098 Score = 329 bits (364), Expect = 3e-85 Identities = 1165/1803 (65%), Gaps = 54/1803 (3%) Strand=Plus/Minus Query 122897 AAAGGTCGCCGAACGTATTCAACATATGCTCATGCGCGTCGCTATAGGCGTGCACGGACG 122956 |||| |||| || || || |||||||| |||||||| || || || | || ||| Sbjct 5752249 AAAGATCGCAGAGCGACCGCAGCATATGCTGATGCGCGTTGCGATCGGAATCCATGGAGA 5752190 Query 122957 CGACATCGAAAACGCGACCG---AAACTTACGATTTGATGTCTCAAAAATTTTTCACGCA 123013 || ||||| ||| ||| |||| || || | |||| | | |||||||| Sbjct 5752189 GGATATCGAT---GCGGCCGTGGAAACCTATAATCTTCTGTCGGAGCGCTACTTCACGCA 5752133 Query 123014 CGCGAGTCCCACTTTGTTCGCCGCCGGCACGAAGTTGCCTCAGTTGTCTTCGTGTTTTTT 123073 || ||||| |||| ||||| | ||| || ||| |||||||| |||||||| | Sbjct 5752132 TGCATCGCCCACACTGTTTGCCGCTGCCACAAACCGGCCGCAGTTGTCGTCGTGTTTCCT 5752073 Query 123074 GCTCACCTTGCGCGAAGACAGCATCACCGGTATCTATGAAACTTTGCGCGATTGCGCGTT 123133 || ||| || | ||| |||| || || | | || || | ||||| | Sbjct 5752072 TCTGACCATGACAGCCGACTCCATCGAGGGCATTTTCAAGTCTGTGGAACAATGCGCCAT 5752013 Query 123134 GATTTCCAAATTTGGCGGCGGCATAGGCGTGAACGTGCACGACGTAAGAGGCCGCGGAAG 123193 ||| ||||| | | ||| ||||| || | |||||||| | | | | || | Sbjct 5752012 GATCTCCAAGTCCGCCGGTGGCATCGGACTCAACGTGCATTGCATTCGTGCAAAGGGCAC 5751953 Query 123194 CCGCATCAGAAGCACCGACGGAATCGCCTCCGGGCTCGAATCCATGCTGCGAGTTTACAA 123253 | || | |||| | || | || ||| | | |||||||| | || | ||| Sbjct 5751952 CTCGATTTGCGGCACAAATGGTACTTCCAATGGGTTGGTTCCCATGCTGAGGGTCTTCAA 5751893 Query 123254 TAACGCCGTGCGGCACGTCGACCAGGG---CGGCAAACGCAAAGGCGCGATGGCGATCTA 123310 ||| | | || | || || ||||| |||||| || || || | || || || Sbjct 5751892 TAATGTGGCACGTTATGTGGATCAGGGAGGCGGCAAGCGTCCCGGTGCCTTTGCCATTTA 5751833 Query 123311 TCTAGAACCGTGGCACGTTGATGTGTACGATTTTTTA-AATTTAAAACGCAACATGGGGG 123369 | | ||||| |||||| ||||| | || || | || | || | | |||| ||| Sbjct 5751832 TTTGGAACCCTGGCACTCGGATGTCTTTGAGTTCCTGGAACTGAAGAAG-AACACGGGCA 5751774 Query 123370 CGGAAGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTACCCGATTTGTTTATGC 123429 ||||| || || |||||| |||| ||||| | ||| |||||||| | || ||| Sbjct 5751773 AAGAAGAGAATCGCGCACGCGATCTGTTTTACGCCCTGTGGATACCCGATCTCTTCATGA 5751714 Query 123430 GACGCGTAAAAGACGACGGCGTGTGGTCGCTCATGTGTCCCGATCGGTGTCCCGGCTTGA 123489 |||||| | | | |||| | |||||||||||||| ||| | |||||| || | Sbjct 5751713 AACGCGTTGAGGCCAACGGTGATTGGTCGCTCATGTGCCCCCACAAGTGTCCTGGTCTCC 5751654 Query 123490 GCGACGTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAATACGAGCGCGAAGG----- 123544 ||| || | ||| || | || || || |||||| | ||||||||| || || Sbjct 5751653 ACGAAGTGTGGGGCGATGAATTCGAAAAGCTGTACGAGAAATACGAGCAAGAGGGTCGGG 5751594 Query 123545 -CAAACA---GGTTAGTCAGGTTCCGGCAC-GTGATTTGTTCAAATTTATTATCGAAACA 123599 ||| | ||||| ||| || | | ||| |||| || || || | Sbjct 5751593 CCAACCGAACGGTTA---AGGCTCAATCCCTGTGGTTTGCC-------ATCATTGAGGCG 5751544 Query 123600 CAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAAT 123659 ||||| || ||||||| ||||||||||||| ||| ||||| ||||||||||| | ||| Sbjct 5751543 CAAGTGGAGACCGGAAATCCGTACATGCTCTTCAAGGACGCTTGCAACAGGAAGAGCAAC 5751484 Query 123660 CAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACAGC 123719 ||| || |||| || || || || || || | ||| | ||||| | ||||| | Sbjct 5751483 CAGCAGAATGTGGGCACCATCAAGTGCAGCAACTTGTGCACGGAAATCGTTGAATATTCC 5751424 Query 123720 GATGCCGATCAAGTGGCCGTGTGTAATTTGGCTTCGATTTGCGTGAA-----TCGTTGCG 123774 | ||| | | || || || || ||||| || || | | || |||| || Sbjct 5751423 TCACCGGATGAGATTGCAGTCTGCAACTTGGCCTCCATCGCCCTCAACATGTTCGTCACG 5751364 Query 123775 TCGAAAACGGCGCTTTTAATTTCCAAACGCTCAAACGCATAACAAAAACTGTAGTAAAGA 123834 || | | | || | | |||| | | |||||| | || || | || || | Sbjct 5751363 CCGGAGAAGACG--TATGATTTTAAGAAGCTCAAGGAAGTCACCAAGATAGTTACCAAAA 5751306 Query 123835 ATTTGAACAAAATTATCGATGTTAATTTTTATCCTTTGGAGGAAGCGCGTTTGTCTAATT 123894 || | ||||| || || ||| | || | |||||| || ||| || | ||| |||| Sbjct 5751305 ATCTAAACAAGATAATTGATATCAACTATTATCCCCTGCCGGAGGCAAGGAAGTCCAATT 5751246 Query 123895 TGAAACACAGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGACGCGTTTGTAATGCTGC 123954 ||| ||| | || || || | || ||||| || || || || || || | | ||| Sbjct 5751245 TGAGGCACCGTCCCGTGGGCATTGGTATTCAGGGATTCGCTGATGCCTTGATTCTCATGC 5751186 Query 123955 GCATGCCGTACGAAAGCGACGAAGCAAAGTTGCTTAATACGCAAATAGCCGAAACAATTT 124014 | | |||||||||||||| ||||| | | ||| ||| ||| |||||| |||| Sbjct 5751185 GTTTCCCGTACGAAAGCGAAGAAGCCGGTCTTTTGAATCAGCAGATATTCGAAACCATTT 5751126 Query 124015 ATTACGGCGCTTTGGAGGCGAGCTGCGAACTTGCGAAAATTCACGGCGCGTACGAAAGTT 124074 | || ||||| ||||| || ||||||||||| || | | | || || ||||||| | Sbjct 5751125 ACTATGGCGCCTTGGAAGCCAGCTGCGAACTGGCCCAGACCGAAGGTGCATACGAAACCT 5751066 Query 124075 ACGCGGGCAGCCCGGCGAGCCGAGGTATTTTGCAGTACGACATGTGGAATGCTACACCGA 124134 ||| ||||||||||| |||| ||| ||||||||||||||||||||| | || | Sbjct 5751065 ACGAGGGCAGCCCGGTGAGCAAAGGAATTTTGCAGTACGACATGTGGGACAAGGTGCCAA 5751006 Query 124135 CAAATTTGTGGGACTGGAGCGTTTTAAAACAACGCATATCGACGCACGGTTTGCGTAACT 124194 | || ||||||||||| || || | ||| || ||||||| | || |||| Sbjct 5751005 CGAACCTGTGGGACTGGCAGAAATTGAAGGAGTCCATTAAGAAGCACGGTGTCCGGAACT 5750946 Query 124195 CGCTGTTGGTGGCGTACATGCCGACGGCAACCACTGCTCAAATTTTAGGAAACAACGAAT 124254 | ||| | || || |||||| || ||| | || ||||| || | || ||||| |||| Sbjct 5750945 CCCTGCTCGTTGCTCCCATGCCCACTGCATCTACGGCTCAGATAATGGGCAACAATGAAT 5750886 Query 124255 CCTTCGAGCCGTTCACTAACAATTTGTACGTGCGACGAGTGTTAGCCGGCGATTTTCAAG 124314 |||||||||| | ||| | || | ||| || ||||| | ||||||| || || | Sbjct 5750885 CCTTCGAGCCCTACACCACGAACATATACACCCGGCGAGTTCTGTCCGGCGAATTCCAGG 5750826 Query 124315 TGATAAATCATCATTTGGTGGACGACTTGGTGGCGTTAAATTTGTACGATGAAAACATGC 124374 || | || ||||||||| || |||| | | | | | |||| || || ||||| Sbjct 5750825 TGGTCAACCATCATTTGTTGCGCGACCTAACCGAGCTGGACTTGTGGGACGACGACATGA 5750766 Query 124375 GCAACGAAATTAT-TGCGGCCGGTGGCAGCG-TGCAGCGCATCGCTTCGATTCCGGAACA 124432 ||| | || || | | || | || | || | || ||| | | || || | | Sbjct 5750765 AGAACCAGATCATATCCAGCAG--GGGATCGATTCAAAACATTGAGACCATCCCCCAGAA 5750708 Query 124433 CGT-CAAGCAACTGTACAAAACCGTGTGGGAAAT----GAAAAATAAACGATTAATTGAA 124487 || | || | ||||| || || ||||||||||| | || | ||||||| || Sbjct 5750707 GGTGCGAG-ATCTGTATAAGACGGTGTGGGAAATCTCAGTCAAGTCCACGATTA----AA 5750653 Query 124488 ATGGCCGTCGACCGAGGCGCGTACACGGATCAAAGTCAATCTTTTAACGTGTTTGTAGCG 124547 ||||||| ||| || || |||| || ||||| ||||| || || ||| | ||| || Sbjct 5750652 ATGGCCGCCGATCGTGGTGCGTTCATAGATCAGAGTCAGTCGTTCAACATACATGTGGCC 5750593 Query 124548 GAACCCACCTACGCCCGCATGACCAGCATACACATGCACGCGTGGAGCAGC-GGACTCAA 124606 || || | ||| | |||| ||||||| | || | |||| ||| || || || Sbjct 5750592 GAGCCAAACTATGGAAAGCTGACTTCCATACACTTTTACTCCTGGA-AAGCAGGTCTTAA 5750534 Query 124607 AACGGGCATGTATTACTTAAGAACCAAACCGGCGGCCGATGCCATTCAATTTACCGTCGA 124666 ||| || ||||| || | | ||||| || || || |||||||||| || ||||| | Sbjct 5750533 AACCGGAATGTACTATCTGCGCACCAAGCCAGCTGCGAATGCCATTCAGTTCACCGTGAA 5750474 Query 124667 CAA 124669 ||| Sbjct 5750473 CAA 5750471 >seq1554 Length=6179234 Score = 82.4 bits (90), Expect = 7e-11 Identities = 145/207 (70%), Gaps = 6/207 (3%) Strand=Plus/Minus Query 45137 ATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA--TCGTCCAAT 45194 ||| || || || ||||| ||||| || || ||| ||| | | | || ||||| Sbjct 592522 ATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCG--GACAGAGTGCGTCCGTCCTCCAAC 592465 Query 45195 TGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATT 45254 || ||||| ||| | ||||| || ||||| || || || || || || || || || || Sbjct 592464 TGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGGATC 592405 Query 45255 TTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCC 45313 || |||| || | || | ||| ||||| | ||| || || | ||| | || ||||| Sbjct 592404 TTGGCCTTGA-CGTTCTCGATGGTATCGGATGGCTCAACCTCCAAAGTGATGGTCTTGCC 592346 Query 45314 GGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| ||||| || || ||||||||||| Sbjct 592345 GGTCAGAGTCTTAACGAAAATTTGCAT 592319 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451919969260760