Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18] 14,731 sequences; 166,592,095 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq1555 159 4e-34 seq1551 116 5e-21 seq1557 114 2e-20 >seq1555 Length=7220098 Score = 159 bits (176), Expect = 4e-34 Identities = 626/979 (64%), Gaps = 9/979 (1%) Strand=Plus/Plus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 || ||||| || ||||| ||||| ||| | |||||||| |||| || || || || || Sbjct 5750858 TATATGTTCGTGGTGTAGGGCTCGAAGGATTCATTGTTGCCCATTATCTGAGCCGTAGAT 5750917 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCC 116022 || ||||||||||| || | ||| ||| ||| |||| ||| | | ||||| ||| Sbjct 5750918 GCAGTGGGCATGGGAGCAACGAGCAGGGAGTTCCGGACACCGTGCTTCTTAATGGACTCC 5750977 Query 116023 TTGAGGGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTCCCACATATCAAACTGGAGG 116082 || | | |||||| | | | ||| | || |||||||| || |||| | Sbjct 5750978 TTCAATTTCTGCCAGTCCCACAGGTTCGTTGGCACCTTGTCCCACATGTCGTACTGCAAA 5751037 Query 116083 ATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAAT 116142 || |||| | | | || ||||| | || || |||| || || || |||| | Sbjct 5751038 ATTCCTTTGCTCACCGGGCTGCCCTCGTAGGTTTCGTATGCACCTTCGGTCTGGGCCAGT 5751097 Query 116143 TCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCC 116202 ||| |||| || || | ||| | | || || || || || || | ||||| Sbjct 5751098 TCGCAGCTGGCTTCCAAGGCGCCATAGTAAATGGTTTCGAATATCTGCTGATTCAAAAGA 5751157 Query 116203 TTGGCCTCGTCGGAATCAAACGCGAGACGGCACAAAATAAATACATCCGCGAGACCTTGG 116262 ||| || ||| || ||| || ||| | ||| || |||| |||| || || Sbjct 5751158 CCGGCTTCTTCGCTTTCGTACGGGAAACGCATGAGAATCAAGGCATCAGCGAATCCCTGA 5751217 Query 116263 ACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACGGGATAA 116322 | ||| | ||| | || || || |||| ||| ||||| | || | || ||||||| Sbjct 5751218 ATACCAATGCCCACGGGACGGTGCCTCAAATTGGACTTCCTTGCCTCCGGCAGGGGATAA 5751277 Query 116323 AAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGC 116382 | || |||| || | | | |||||||||||||| || | ||| |||| ||| | ||| Sbjct 5751278 TAGTTGATATCAATTATCTTGTTTAGATTTTTGGTAACTATCTTGGTGACTTCCTTGAGC 5751337 Query 116383 TTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCC 116442 || | ||||| | | |||| |||| || | |||||||| || ||| Sbjct 5751338 TTCTTAAAATCATACGT---CTTCTCCGGCGTGACGAACATGTTGAGGGCGATGGAGGCC 5751394 Query 116443 AGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTT 116502 | || || || | |||||||| | || || | |||||||| ||||| || Sbjct 5751395 AAGTTGCAGACTGCAATCTCATCCGGTGAGGAATATTCAACGATTTCCGTGCACAAGTTG 5751454 Query 116503 GAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAG 116562 | ||| |||||||||| |||| || || ||| |||| || || |||||| || Sbjct 5751455 CTGCACTTGATGGTGCCCACATTCTGCTGGTTGCTCTTCCTGTTGCAAGCGTCCTTGAAG 5751514 Query 116563 AGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATA--CATCGG 116620 ||||| || || | || |||||| ||| | || | || || ||| | || | Sbjct 5751515 AGCATGTACGGATTTCCGGTCTCCACTTGCGCCTCAATGATGGCAAACCACAGGGATTG- 5751573 Query 116621 CGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAA 116680 || || || |||||| || ||||| | |||||| || ||| || || | Sbjct 5751574 -AGCCTTAACCGTTCGGTTGGCCCGACCCTCTTGCTCGTATTTCTCGTACAGCTTTTCGA 5751632 Query 116681 ACTCTTC-ACCCACAGCCTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAGACCAT 116739 | || || |||||| | || ||| || || ||| | || || | ||| ||||| Sbjct 5751633 ATTCATCGCCCCACA-CTTCGTGGAGACCAGGACACTTGTGGGGGCACATGAGCGACCAA 5751691 Query 116740 TGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGA 116799 | ||| ||||||| || ||||||||||| || || ||||| || || | || ||| Sbjct 5751692 TCACCGTTGGCCTCAACGCGTTTCATGAAGAGATCGGGTATCCACAGGGCGTAAAACAGA 5751751 Query 116800 TCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATA 116859 || || |||| ||||| | ||| || || |||| || || | || | Sbjct 5751752 TCGCGTGCGCGATTCTCTTCTTTGCCCGTGTTCTTCTTCAGTTCCAGGAACTCAAAGACA 5751811 Query 116860 TCCGCGTGCCACGGTTCCA 116878 |||| |||||| ||||||| Sbjct 5751812 TCCGAGTGCCAGGGTTCCA 5751830 >seq1551 Length=3727775 Score = 116 bits (128), Expect = 5e-21 Identities = 172/241 (71%), Gaps = 2/241 (1%) Strand=Plus/Plus Query 175927 ATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTGATATT 175986 ||||||||| ||| | | || || ||||||||||| | ||||||||| ||||| || || Sbjct 3065294 ATCTTTGCCTCCCGTCAAGCGGGTACCAAATTGACCGCGTGGCTCAAGCAGATTAATGTT 3065353 Query 175987 GTTTGAGCCCATATAGTCATTCGCCAACTTGACAATCGT-ATCCGCGAGGGAGACTTCAC 176045 ||| | |||| | | | | |||| || || || || ||| || ||||| || || | Sbjct 3065354 GTTCGCACCCACAAAATTCTGGGCCAGATTTACGATTGTCATCTGC-AGGGATACCTCTC 3065412 Query 176046 CGTGATGGTAGGCCGACTTGTCCGCCACATACGCCGCCAACTGCGCCACCTTCATCTCAT 176105 |||| |||||||||||| | |||||||| | | | | ||| |||||||||| |||| Sbjct 3065413 CGTGGTGGTAGGCCGACATCTCCGCCACTGATCCGGATAGCTGGGCCACCTTCACCTCAC 3065472 Query 176106 CCTTGAGGTTCTTGTGGAAGCACGCATACATGACCTTTCTCTGTGAAGGCTTGAGGCCGT 176165 |||| ||| | | ||| || | |||| ||||| | ||| ||||| | ||| | Sbjct 3065473 GCTTGTCATTCCTTTTGAAACAAGTGAACATCACCTTCCGCTGACCCGGCTTCAAGCCAT 3065532 Query 176166 C 176166 | Sbjct 3065533 C 3065533 Score = 82.4 bits (90), Expect = 9e-11 Identities = 142/204 (70%), Gaps = 7/204 (3%) Strand=Plus/Plus Query 176797 AGCGTCGCGGACATTTTTACACTTCCCGCGGAGAGGGAACACACCGTAGTGATCACGACC 176856 ||| || || |||||| | || || | || |||||||| ||||||||||| || || Sbjct 3066203 AGCTTCCCGCACATTTAGAAGTTTACCCCTAAGCGGGAACACGCCGTAGTGATCTCGTCC 3066262 Query 176857 AACCACAGAGAGACCAGCAACTGCGAGGGTCTTCGCGGAATCACCCTCCGTCACGATGAG 176916 | ||| ||||||| || || | | ||| || || || |||||||| | |||||| Sbjct 3066263 GATCACGCCCAGACCAGATACGGCTAATGACTTGGCTGAGTCTCCCTCCGTGAGGATGAG 3066322 Query 176917 CGTACACTTTCCAGATTGTGCCGTC--CCCGCCTTGTTCGCATCGTCCAACTTGGGAATA 176974 || || || ||| || | || ||||||| ||| || || |||| ||||||||| Sbjct 3066323 GGTGCAATTAATAGA--GTTCTTTCCACCCGCCTCGTTAGCGTCTTCCAGCTTGGGAATG 3066380 Query 176975 CCAGTAATTTTG---GACTTACGA 176995 || | || ||| ||||| ||| Sbjct 3066381 CCCTTGATCTTGCTTGACTTGCGA 3066404 >seq1557 Length=14215200 Score = 114 bits (126), Expect = 2e-20 Identities = 280/420 (67%), Gaps = 6/420 (1%) Strand=Plus/Plus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATAT--TCTCC 127288 ||| ||| | ||| ||||||||| ||||| ||||| || || || ||||| ||||| Sbjct 5421667 GTACTCCGCCACCTTCTTCTCGAAAAAGTTGGTCTTTCCGTCCAGC--GATATCATCTCC 5421724 Query 127289 ATAAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAGGAGA 127348 || || | ||||||||| || | ||| | || || || || | || ||| | | Sbjct 5421725 ATGAAGTTAAATGGGTTTTTGGTGTTGTAGATCTTTCCAACGCCCAACTCCACGAGCAAA 5421784 Query 127349 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTA 127408 || |||| ||| |||||||||||| |||||| || | ||||| ||||| | || Sbjct 5421785 CGGTCCGCTACGAACTCAATGTACTGGGACATCAGGTCGCAATTCATGCCGATCAAATTG 5421844 Query 127409 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCG 127468 || || || || || |||| ||| ||| ||| |||| || || || | ||| || Sbjct 5421845 ACGGGCAGGGCATCGGTGAGGAACTCCTGCTCTATGGCCACCGCGTCGCGGATGATCTCG 5421904 Query 127469 TGAATAGTGTCCACCCCAGGTCTATTGCGTAAAGT-CTTGAAGAGTTCCACAGCAAACTC 127527 || | | | | | || ||| | || || ||| | ||| ||||| || Sbjct 5421905 ATGAT-GCGCTCGCGCTTGGGTCGCTGCACCAGGTGCTGGAACATCAGCACGGCAAAGTC 5421963 Query 127528 TTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAG 127587 ||| | |||||||| || ||||| || || || |||||| || || ||||| || Sbjct 5421964 GCAGTGCAAGCCCTCGTCGCGAGAGATCAGCTCGTTGGAGAAGGTCAATCCAGGCATCAG 5422023 Query 127588 ACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 127647 ||| |||||||| | ||||||||| | || ||| |||||| || |||||||| Sbjct 5422024 ACCGCGCTTCTTAAGCCAGAAAATGGAGGCGAAGCTGCCGCTGAAGAAAATGCCCTCCAC 5422083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613394230317960