Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18]
14,731 sequences; 166,592,095 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq1555 159 4e-34
seq1551 116 5e-21
seq1557 114 2e-20
>seq1555
Length=7220098
Score = 159 bits (176), Expect = 4e-34
Identities = 626/979 (64%), Gaps = 9/979 (1%)
Strand=Plus/Plus
Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962
|| ||||| || ||||| ||||| ||| | |||||||| |||| || || || || ||
Sbjct 5750858 TATATGTTCGTGGTGTAGGGCTCGAAGGATTCATTGTTGCCCATTATCTGAGCCGTAGAT 5750917
Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCC 116022
|| ||||||||||| || | ||| ||| ||| |||| ||| | | ||||| |||
Sbjct 5750918 GCAGTGGGCATGGGAGCAACGAGCAGGGAGTTCCGGACACCGTGCTTCTTAATGGACTCC 5750977
Query 116023 TTGAGGGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTCCCACATATCAAACTGGAGG 116082
|| | | |||||| | | | ||| | || |||||||| || |||| |
Sbjct 5750978 TTCAATTTCTGCCAGTCCCACAGGTTCGTTGGCACCTTGTCCCACATGTCGTACTGCAAA 5751037
Query 116083 ATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAAT 116142
|| |||| | | | || ||||| | || || |||| || || || |||| |
Sbjct 5751038 ATTCCTTTGCTCACCGGGCTGCCCTCGTAGGTTTCGTATGCACCTTCGGTCTGGGCCAGT 5751097
Query 116143 TCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCC 116202
||| |||| || || | ||| | | || || || || || || | |||||
Sbjct 5751098 TCGCAGCTGGCTTCCAAGGCGCCATAGTAAATGGTTTCGAATATCTGCTGATTCAAAAGA 5751157
Query 116203 TTGGCCTCGTCGGAATCAAACGCGAGACGGCACAAAATAAATACATCCGCGAGACCTTGG 116262
||| || ||| || ||| || ||| | ||| || |||| |||| || ||
Sbjct 5751158 CCGGCTTCTTCGCTTTCGTACGGGAAACGCATGAGAATCAAGGCATCAGCGAATCCCTGA 5751217
Query 116263 ACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACGGGATAA 116322
| ||| | ||| | || || || |||| ||| ||||| | || | || |||||||
Sbjct 5751218 ATACCAATGCCCACGGGACGGTGCCTCAAATTGGACTTCCTTGCCTCCGGCAGGGGATAA 5751277
Query 116323 AAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGC 116382
| || |||| || | | | |||||||||||||| || | ||| |||| ||| | |||
Sbjct 5751278 TAGTTGATATCAATTATCTTGTTTAGATTTTTGGTAACTATCTTGGTGACTTCCTTGAGC 5751337
Query 116383 TTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCC 116442
|| | ||||| | | |||| |||| || | |||||||| || |||
Sbjct 5751338 TTCTTAAAATCATACGT---CTTCTCCGGCGTGACGAACATGTTGAGGGCGATGGAGGCC 5751394
Query 116443 AGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTT 116502
| || || || | |||||||| | || || | |||||||| ||||| ||
Sbjct 5751395 AAGTTGCAGACTGCAATCTCATCCGGTGAGGAATATTCAACGATTTCCGTGCACAAGTTG 5751454
Query 116503 GAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAG 116562
| ||| |||||||||| |||| || || ||| |||| || || |||||| ||
Sbjct 5751455 CTGCACTTGATGGTGCCCACATTCTGCTGGTTGCTCTTCCTGTTGCAAGCGTCCTTGAAG 5751514
Query 116563 AGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATA--CATCGG 116620
||||| || || | || |||||| ||| | || | || || ||| | || |
Sbjct 5751515 AGCATGTACGGATTTCCGGTCTCCACTTGCGCCTCAATGATGGCAAACCACAGGGATTG- 5751573
Query 116621 CGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAA 116680
|| || || |||||| || ||||| | |||||| || ||| || || |
Sbjct 5751574 -AGCCTTAACCGTTCGGTTGGCCCGACCCTCTTGCTCGTATTTCTCGTACAGCTTTTCGA 5751632
Query 116681 ACTCTTC-ACCCACAGCCTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAGACCAT 116739
| || || |||||| | || ||| || || ||| | || || | ||| |||||
Sbjct 5751633 ATTCATCGCCCCACA-CTTCGTGGAGACCAGGACACTTGTGGGGGCACATGAGCGACCAA 5751691
Query 116740 TGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGA 116799
| ||| ||||||| || ||||||||||| || || ||||| || || | || |||
Sbjct 5751692 TCACCGTTGGCCTCAACGCGTTTCATGAAGAGATCGGGTATCCACAGGGCGTAAAACAGA 5751751
Query 116800 TCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATA 116859
|| || |||| ||||| | ||| || || |||| || || | || |
Sbjct 5751752 TCGCGTGCGCGATTCTCTTCTTTGCCCGTGTTCTTCTTCAGTTCCAGGAACTCAAAGACA 5751811
Query 116860 TCCGCGTGCCACGGTTCCA 116878
|||| |||||| |||||||
Sbjct 5751812 TCCGAGTGCCAGGGTTCCA 5751830
>seq1551
Length=3727775
Score = 116 bits (128), Expect = 5e-21
Identities = 172/241 (71%), Gaps = 2/241 (1%)
Strand=Plus/Plus
Query 175927 ATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTGATATT 175986
||||||||| ||| | | || || ||||||||||| | ||||||||| ||||| || ||
Sbjct 3065294 ATCTTTGCCTCCCGTCAAGCGGGTACCAAATTGACCGCGTGGCTCAAGCAGATTAATGTT 3065353
Query 175987 GTTTGAGCCCATATAGTCATTCGCCAACTTGACAATCGT-ATCCGCGAGGGAGACTTCAC 176045
||| | |||| | | | | |||| || || || || ||| || ||||| || || |
Sbjct 3065354 GTTCGCACCCACAAAATTCTGGGCCAGATTTACGATTGTCATCTGC-AGGGATACCTCTC 3065412
Query 176046 CGTGATGGTAGGCCGACTTGTCCGCCACATACGCCGCCAACTGCGCCACCTTCATCTCAT 176105
|||| |||||||||||| | |||||||| | | | | ||| |||||||||| ||||
Sbjct 3065413 CGTGGTGGTAGGCCGACATCTCCGCCACTGATCCGGATAGCTGGGCCACCTTCACCTCAC 3065472
Query 176106 CCTTGAGGTTCTTGTGGAAGCACGCATACATGACCTTTCTCTGTGAAGGCTTGAGGCCGT 176165
|||| ||| | | ||| || | |||| ||||| | ||| ||||| | ||| |
Sbjct 3065473 GCTTGTCATTCCTTTTGAAACAAGTGAACATCACCTTCCGCTGACCCGGCTTCAAGCCAT 3065532
Query 176166 C 176166
|
Sbjct 3065533 C 3065533
Score = 82.4 bits (90), Expect = 9e-11
Identities = 142/204 (70%), Gaps = 7/204 (3%)
Strand=Plus/Plus
Query 176797 AGCGTCGCGGACATTTTTACACTTCCCGCGGAGAGGGAACACACCGTAGTGATCACGACC 176856
||| || || |||||| | || || | || |||||||| ||||||||||| || ||
Sbjct 3066203 AGCTTCCCGCACATTTAGAAGTTTACCCCTAAGCGGGAACACGCCGTAGTGATCTCGTCC 3066262
Query 176857 AACCACAGAGAGACCAGCAACTGCGAGGGTCTTCGCGGAATCACCCTCCGTCACGATGAG 176916
| ||| ||||||| || || | | ||| || || || |||||||| | ||||||
Sbjct 3066263 GATCACGCCCAGACCAGATACGGCTAATGACTTGGCTGAGTCTCCCTCCGTGAGGATGAG 3066322
Query 176917 CGTACACTTTCCAGATTGTGCCGTC--CCCGCCTTGTTCGCATCGTCCAACTTGGGAATA 176974
|| || || ||| || | || ||||||| ||| || || |||| |||||||||
Sbjct 3066323 GGTGCAATTAATAGA--GTTCTTTCCACCCGCCTCGTTAGCGTCTTCCAGCTTGGGAATG 3066380
Query 176975 CCAGTAATTTTG---GACTTACGA 176995
|| | || ||| ||||| |||
Sbjct 3066381 CCCTTGATCTTGCTTGACTTGCGA 3066404
>seq1557
Length=14215200
Score = 114 bits (126), Expect = 2e-20
Identities = 280/420 (67%), Gaps = 6/420 (1%)
Strand=Plus/Plus
Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATAT--TCTCC 127288
||| ||| | ||| ||||||||| ||||| ||||| || || || ||||| |||||
Sbjct 5421667 GTACTCCGCCACCTTCTTCTCGAAAAAGTTGGTCTTTCCGTCCAGC--GATATCATCTCC 5421724
Query 127289 ATAAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAGGAGA 127348
|| || | ||||||||| || | ||| | || || || || | || ||| | |
Sbjct 5421725 ATGAAGTTAAATGGGTTTTTGGTGTTGTAGATCTTTCCAACGCCCAACTCCACGAGCAAA 5421784
Query 127349 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTA 127408
|| |||| ||| |||||||||||| |||||| || | ||||| ||||| | ||
Sbjct 5421785 CGGTCCGCTACGAACTCAATGTACTGGGACATCAGGTCGCAATTCATGCCGATCAAATTG 5421844
Query 127409 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCG 127468
|| || || || || |||| ||| ||| ||| |||| || || || | ||| ||
Sbjct 5421845 ACGGGCAGGGCATCGGTGAGGAACTCCTGCTCTATGGCCACCGCGTCGCGGATGATCTCG 5421904
Query 127469 TGAATAGTGTCCACCCCAGGTCTATTGCGTAAAGT-CTTGAAGAGTTCCACAGCAAACTC 127527
|| | | | | | || ||| | || || ||| | ||| ||||| ||
Sbjct 5421905 ATGAT-GCGCTCGCGCTTGGGTCGCTGCACCAGGTGCTGGAACATCAGCACGGCAAAGTC 5421963
Query 127528 TTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAG 127587
||| | |||||||| || ||||| || || || |||||| || || ||||| ||
Sbjct 5421964 GCAGTGCAAGCCCTCGTCGCGAGAGATCAGCTCGTTGGAGAAGGTCAATCCAGGCATCAG 5422023
Query 127588 ACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 127647
||| |||||||| | ||||||||| | || ||| |||||| || ||||||||
Sbjct 5422024 ACCGCGCTTCTTAAGCCAGAAAATGGAGGCGAAGCTGCCGCTGAAGAAAATGCCCTCCAC 5422083
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 613394230317960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |