Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18] 14,731 sequences; 166,592,095 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq1555 206 4e-48 seq1557 199 6e-46 >seq1555 Length=7220098 Score = 206 bits (228), Expect = 4e-48 Identities = 475/697 (68%), Gaps = 30/697 (4%) Strand=Plus/Plus Query 203832 CCTTCGTCTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGT 203891 ||| | |||||| ||| |||||||||||||| ||| | || ||| || | | |||||||| Sbjct 5750463 CCTGCTTCTTGTTCACGGTGAACTGAATGGCATTCGCAGCTGGCTTGGTGCGCAGATAGT 5750522 Query 203892 ACATGCCGGTCTTTAGGCCCTTC-TGCCACCCGTACATGTGCATGGAAGACAGTTTGCTC 203950 |||| ||||| |||| | ||| | | ||| ||| | ||| ||||||| ||| || | Sbjct 5750523 ACATTCCGGT-TTTAAGACCTGCTTTCCAGGAGTAAAAGTGTATGGAAGTCAGCTTTCCA 5750581 Query 203951 ACGTTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGA 204010 ||| || ||||||| || ||||| | ||||| || || || ||||| | | ||| Sbjct 5750582 TAGTTTGGCTCGGCCACATGTATGTTGAACGACTGACTCTGATCTATGAACGCACCACGA 5750641 Query 204011 TCTGCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCT 204070 || |||||||| || || ||| ||| || || |||||||||||||| ||| ||| Sbjct 5750642 TCGGCGGCCATTTTAATCGTGGACTTGACTGAGATTTCCCACACCGTCTTATACAGATCT 5750701 Query 204071 CTGGTGTGTTGAGGCA-CATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTC 204128 | | || || | ||| | | || || ||||| || || || || | || Sbjct 5750702 CGCACCTTCTGGGGGATGGTCT--CAATGTTTTGAATCGATCCCCTGCTGGATATGA-TC 5750758 Query 204129 T-CATCCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGG 204187 | || || | || || |||||| | ||| | | | || || |||| || || || Sbjct 5750759 TGGTTCTTCATGTCGTCGTCCCACAAGTCCAGCTCGGTTAGGTCGCGCAACAAATGATGG 5750818 Query 204188 TTGATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGT 204247 |||| | ||| || || |||||||| || | |||||| | | ||| ||||| | || Sbjct 5750819 TTGACCACCTGGAATTCGCCGGACAGAACTCGCCGGGTGTATATGTTCGTGGTGTAGGGC 5750878 Query 204248 TCGAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGG 204307 ||||| | || |||||||| | |||||||| || || |||||||||||||| | | Sbjct 5750879 TCGAAGGATTCATTGTTGCCCATTATCTGAGCCGTAGATGCAGTGGGCATGGGAGCAACG 5750938 Query 204308 AGCAGGGAGTTGCGCACACCG----TATTTTTGGAC-CCTGC-GCTTCAGAGAGGTCCAG 204361 ||||||||||| || |||||| | || ||||| ||| | ||| | || ||| Sbjct 5750939 AGCAGGGAGTTCCGGACACCGTGCTTCTTAATGGACTCCTTCAATTTCTGCCAGTCCCAC 5750998 Query 204362 TCGTGCATCGCACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACT 204421 || ||| | || | | ||||||||||| |||| || || |||| || || Sbjct 5750999 AGGT---TCG---TTGGCACCTTGTCCCACATGTCGTACTGCAAAATTCCTTTGCTCACC 5751052 Query 204422 GGGCTGCCCTTGTACG--TCGGATAAGGCTGATCCTC-TTCT--GCCAGCTTGCACGAGG 204476 |||||||||| ||| | ||| || || | | || ||| ||||| | ||| || Sbjct 5751053 GGGCTGCCCTCGTAGGTTTCGTAT---GC--ACCTTCGGTCTGGGCCAGTTCGCAGCTGG 5751107 Query 204477 CGGCCATGGCGTGATAGTACATGGTCTCAAAGATCTG 204513 | ||| |||| |||||| ||||| || || ||||| Sbjct 5751108 CTTCCAAGGCGCCATAGTAAATGGTTTCGAATATCTG 5751144 >seq1557 Length=14215200 Score = 199 bits (220), Expect = 6e-46 Identities = 548/825 (66%), Gaps = 30/825 (4%) Strand=Plus/Plus Query 159631 CTTGTATTGCGACACATTCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTC 159690 || ||| | || ||| ||||||||||||||||||||||| || |||| ||||| || Sbjct 5421664 CTGGTACTCCGCCACCTTCTTCTCGAAAAAGTTGGTCTTTCCGTCCAGCGATATCATCTC 5421723 Query 159691 CATGAACCCGAATGGGTTCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAA 159750 |||||| |||||||| || || ||| ||| || || | || | ||||| Sbjct 5421724 CATGAAGTTAAATGGGTTTTTGGTGTTGTAGATCTTTCCAACGCCCAACTCCACGAGCAA 5421783 Query 159751 CCTGTCTGCCACAAATTCGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCT 159810 | ||| || || || || ||||| ||||| | || || || || || | || | Sbjct 5421784 ACGGTCCGCTACGAACTCAATGTACTGGGACATCAGGTCGCAATTCATGCCGATCAAATT 5421843 Query 159811 AACGGGGAGCGCTTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTG 159870 ||||| || || || | || ||||||| ||| || | ||||| ||| | |||| Sbjct 5421844 GACGGGCAGGGCATCGGTGAGGAACTCCTGCTCTATGGCCACCGCGTCGCGGATGATCT- 5421902 Query 159871 CGA-GACACGTTCGTACCCCGGCTTGCC-CAAAATGTGGTCCTTAAACAGGAGGCACG-C 159927 ||| || || ||| | || | || || | ||| || |||| || |||| | Sbjct 5421903 CGATGATGCGCTCGCGCTTGGG-TCGCTGCACCAGGTG---CTGGAACATCAG-CACGGC 5421957 Query 159928 AAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGG 159987 |||||||||||||| |||||||| |||||||| | ||||||||| | | | | || || Sbjct 5421958 AAAGTCGCAGTGCAAGCCCTCGTCGCGAGAGATCAGCTCGTTGGAGAAGGTCAATCCAGG 5422017 Query 159988 CATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAGATCCC 160047 ||| | || ||| || ||||| ||||||| || || ||||| || || || || Sbjct 5422018 CATCAGACCGCGCTTCTTAAGCCAGAAAATGGAGGCGAAGCTGCCGCTGAAGAAAATGCC 5422077 Query 160048 CTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGC---GTTGGTGTCATG-GG 160103 ||||||||| ||||| || | || | ||| || ||| ||| |||| ||| | Sbjct 5422078 CTCCACGGCGGCAAAGGCGATGATGCGCTCCCCGAAATTGGCCGACTTGG----ATGAGA 5422133 Query 160104 TCCACCTTTTGGCCCATTCAGCCTTCTTTGCGATGCA----CGGCATGCGCTCGACGGCG 160159 |||| |||||| || ||| ||||| | || |||||| |||| ||| Sbjct 5422134 TCCAGGACAGGGCCCAGTCTGCC----TTGCGCTTCACAGCCGGCATCGTTTCGATAGCG 5422189 Query 160160 TTAAACAATCTGTCCTGCTCCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTAC 160219 || |||| || ||| | |||| ||| ||| | |||| |||| Sbjct 5422190 TTGAACAGGTACTCTCGCTGGTGTGGATCCCGGATGTAAGTGTCGATCAAAACACTGTAC 5422249 Query 160220 ATTTCTGCGTGCACATTTTCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCC-AG 160278 || || | |||||| || || ||||| ||||| ||| |||||| || |||||| | Sbjct 5422250 ATCTCCGAGTGCACGTTCTCCATGGCGATCTGGAAGCCGTAGAAGCATCGTGCCTCCGTG 5422309 Query 160279 ATACTGCACCTCCTGTGTGAACCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGC 160338 || |||||||||||| |||| | | |||| || | || || | || || | ||| Sbjct 5422310 AT-CTGCACCTCCTGACTGAAGCGCTCCACCAGGTTCTCGTTTACGATGCCATCAGAGGC 5422368 Query 160339 CGCAAAGAAAGCCAACACGTGAGAGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTC 160398 || ||||| |||| |||||| ||||||||||| | |||||| | || || | | Sbjct 5422369 GGCGAAGAAGGCCAGCACGTGCGAGATGAAATGGCGCTCGTCGTCCTTCAGGC---GGTG 5422425 Query 160399 CCAGTGTGTCACGTCTTGGGCCAAATCAACCTCTTCCGCGCTCCA 160443 ||||| || | ||| | || |||||| ||||| || || |||| Sbjct 5422426 CCAGTCAGTAAGGTCCTTGGACAAATCCACCTCCTCGACGGTCCA 5422470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795008782109360