Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18]
14,731 sequences; 166,592,095 total letters
Query= NC_013668.3
Length=248526
Score E
Sequences producing significant alignments: (Bits) Value
seq1555 206 4e-48
seq1557 199 6e-46
>seq1555
Length=7220098
Score = 206 bits (228), Expect = 4e-48
Identities = 475/697 (68%), Gaps = 30/697 (4%)
Strand=Plus/Plus
Query 203832 CCTTCGTCTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGT 203891
||| | |||||| ||| |||||||||||||| ||| | || ||| || | | ||||||||
Sbjct 5750463 CCTGCTTCTTGTTCACGGTGAACTGAATGGCATTCGCAGCTGGCTTGGTGCGCAGATAGT 5750522
Query 203892 ACATGCCGGTCTTTAGGCCCTTC-TGCCACCCGTACATGTGCATGGAAGACAGTTTGCTC 203950
|||| ||||| |||| | ||| | | ||| ||| | ||| ||||||| ||| || |
Sbjct 5750523 ACATTCCGGT-TTTAAGACCTGCTTTCCAGGAGTAAAAGTGTATGGAAGTCAGCTTTCCA 5750581
Query 203951 ACGTTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGA 204010
||| || ||||||| || ||||| | ||||| || || || ||||| | | |||
Sbjct 5750582 TAGTTTGGCTCGGCCACATGTATGTTGAACGACTGACTCTGATCTATGAACGCACCACGA 5750641
Query 204011 TCTGCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCT 204070
|| |||||||| || || ||| ||| || || |||||||||||||| ||| |||
Sbjct 5750642 TCGGCGGCCATTTTAATCGTGGACTTGACTGAGATTTCCCACACCGTCTTATACAGATCT 5750701
Query 204071 CTGGTGTGTTGAGGCA-CATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTC 204128
| | || || | ||| | | || || ||||| || || || || | ||
Sbjct 5750702 CGCACCTTCTGGGGGATGGTCT--CAATGTTTTGAATCGATCCCCTGCTGGATATGA-TC 5750758
Query 204129 T-CATCCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGG 204187
| || || | || || |||||| | ||| | | | || || |||| || || ||
Sbjct 5750759 TGGTTCTTCATGTCGTCGTCCCACAAGTCCAGCTCGGTTAGGTCGCGCAACAAATGATGG 5750818
Query 204188 TTGATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGT 204247
|||| | ||| || || |||||||| || | |||||| | | ||| ||||| | ||
Sbjct 5750819 TTGACCACCTGGAATTCGCCGGACAGAACTCGCCGGGTGTATATGTTCGTGGTGTAGGGC 5750878
Query 204248 TCGAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGG 204307
||||| | || |||||||| | |||||||| || || |||||||||||||| | |
Sbjct 5750879 TCGAAGGATTCATTGTTGCCCATTATCTGAGCCGTAGATGCAGTGGGCATGGGAGCAACG 5750938
Query 204308 AGCAGGGAGTTGCGCACACCG----TATTTTTGGAC-CCTGC-GCTTCAGAGAGGTCCAG 204361
||||||||||| || |||||| | || ||||| ||| | ||| | || |||
Sbjct 5750939 AGCAGGGAGTTCCGGACACCGTGCTTCTTAATGGACTCCTTCAATTTCTGCCAGTCCCAC 5750998
Query 204362 TCGTGCATCGCACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACT 204421
|| ||| | || | | ||||||||||| |||| || || |||| || ||
Sbjct 5750999 AGGT---TCG---TTGGCACCTTGTCCCACATGTCGTACTGCAAAATTCCTTTGCTCACC 5751052
Query 204422 GGGCTGCCCTTGTACG--TCGGATAAGGCTGATCCTC-TTCT--GCCAGCTTGCACGAGG 204476
|||||||||| ||| | ||| || || | | || ||| ||||| | ||| ||
Sbjct 5751053 GGGCTGCCCTCGTAGGTTTCGTAT---GC--ACCTTCGGTCTGGGCCAGTTCGCAGCTGG 5751107
Query 204477 CGGCCATGGCGTGATAGTACATGGTCTCAAAGATCTG 204513
| ||| |||| |||||| ||||| || || |||||
Sbjct 5751108 CTTCCAAGGCGCCATAGTAAATGGTTTCGAATATCTG 5751144
>seq1557
Length=14215200
Score = 199 bits (220), Expect = 6e-46
Identities = 548/825 (66%), Gaps = 30/825 (4%)
Strand=Plus/Plus
Query 159631 CTTGTATTGCGACACATTCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTC 159690
|| ||| | || ||| ||||||||||||||||||||||| || |||| ||||| ||
Sbjct 5421664 CTGGTACTCCGCCACCTTCTTCTCGAAAAAGTTGGTCTTTCCGTCCAGCGATATCATCTC 5421723
Query 159691 CATGAACCCGAATGGGTTCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAA 159750
|||||| |||||||| || || ||| ||| || || | || | |||||
Sbjct 5421724 CATGAAGTTAAATGGGTTTTTGGTGTTGTAGATCTTTCCAACGCCCAACTCCACGAGCAA 5421783
Query 159751 CCTGTCTGCCACAAATTCGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCT 159810
| ||| || || || || ||||| ||||| | || || || || || | || |
Sbjct 5421784 ACGGTCCGCTACGAACTCAATGTACTGGGACATCAGGTCGCAATTCATGCCGATCAAATT 5421843
Query 159811 AACGGGGAGCGCTTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTG 159870
||||| || || || | || ||||||| ||| || | ||||| ||| | ||||
Sbjct 5421844 GACGGGCAGGGCATCGGTGAGGAACTCCTGCTCTATGGCCACCGCGTCGCGGATGATCT- 5421902
Query 159871 CGA-GACACGTTCGTACCCCGGCTTGCC-CAAAATGTGGTCCTTAAACAGGAGGCACG-C 159927
||| || || ||| | || | || || | ||| || |||| || |||| |
Sbjct 5421903 CGATGATGCGCTCGCGCTTGGG-TCGCTGCACCAGGTG---CTGGAACATCAG-CACGGC 5421957
Query 159928 AAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGG 159987
|||||||||||||| |||||||| |||||||| | ||||||||| | | | | || ||
Sbjct 5421958 AAAGTCGCAGTGCAAGCCCTCGTCGCGAGAGATCAGCTCGTTGGAGAAGGTCAATCCAGG 5422017
Query 159988 CATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAGATCCC 160047
||| | || ||| || ||||| ||||||| || || ||||| || || || ||
Sbjct 5422018 CATCAGACCGCGCTTCTTAAGCCAGAAAATGGAGGCGAAGCTGCCGCTGAAGAAAATGCC 5422077
Query 160048 CTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGC---GTTGGTGTCATG-GG 160103
||||||||| ||||| || | || | ||| || ||| ||| |||| ||| |
Sbjct 5422078 CTCCACGGCGGCAAAGGCGATGATGCGCTCCCCGAAATTGGCCGACTTGG----ATGAGA 5422133
Query 160104 TCCACCTTTTGGCCCATTCAGCCTTCTTTGCGATGCA----CGGCATGCGCTCGACGGCG 160159
|||| |||||| || ||| ||||| | || |||||| |||| |||
Sbjct 5422134 TCCAGGACAGGGCCCAGTCTGCC----TTGCGCTTCACAGCCGGCATCGTTTCGATAGCG 5422189
Query 160160 TTAAACAATCTGTCCTGCTCCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTAC 160219
|| |||| || ||| | |||| ||| ||| | |||| ||||
Sbjct 5422190 TTGAACAGGTACTCTCGCTGGTGTGGATCCCGGATGTAAGTGTCGATCAAAACACTGTAC 5422249
Query 160220 ATTTCTGCGTGCACATTTTCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCC-AG 160278
|| || | |||||| || || ||||| ||||| ||| |||||| || |||||| |
Sbjct 5422250 ATCTCCGAGTGCACGTTCTCCATGGCGATCTGGAAGCCGTAGAAGCATCGTGCCTCCGTG 5422309
Query 160279 ATACTGCACCTCCTGTGTGAACCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGC 160338
|| |||||||||||| |||| | | |||| || | || || | || || | |||
Sbjct 5422310 AT-CTGCACCTCCTGACTGAAGCGCTCCACCAGGTTCTCGTTTACGATGCCATCAGAGGC 5422368
Query 160339 CGCAAAGAAAGCCAACACGTGAGAGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTC 160398
|| ||||| |||| |||||| ||||||||||| | |||||| | || || | |
Sbjct 5422369 GGCGAAGAAGGCCAGCACGTGCGAGATGAAATGGCGCTCGTCGTCCTTCAGGC---GGTG 5422425
Query 160399 CCAGTGTGTCACGTCTTGGGCCAAATCAACCTCTTCCGCGCTCCA 160443
||||| || | ||| | || |||||| ||||| || || ||||
Sbjct 5422426 CCAGTCAGTAAGGTCCTTGGACAAATCCACCTCCTCGACGGTCCA 5422470
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 795008782109360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |