Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18]
14,731 sequences; 166,592,095 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq1554 140 4e-28
seq1553 131 2e-25
seq1556 104 3e-17
seq1555 93.3 5e-14
>seq1554
Length=6179234
Score = 140 bits (154), Expect = 4e-28
Identities = 163/220 (74%), Gaps = 0/220 (0%)
Strand=Plus/Minus
Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437
||||| |||| ||| | || |||||| ||||| ||||||||||| |||||||| |
Sbjct 592534 ACGCAGGACCAAATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCC 592475
Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497
||| || | |||||| |||||||| ||||| |||||||| || | || | | ||||||
Sbjct 592474 GTCCTCCAACTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTT 592415
Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557
|||| |||||| ||||| || | | || ||| | || || |||| |||||
Sbjct 592414 GTCCTGGATCTTGGCCTTGACGTTCTCGATGGTATCGGATGGCTCAACCTCCAAAGTGAT 592355
Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597
||| ||||| ||||| || ||||| || |||||||| |||
Sbjct 592354 GGTCTTGCCGGTCAGAGTCTTAACGAAAATTTGCATATTG 592315
Score = 134 bits (148), Expect = 2e-26
Identities = 145/192 (76%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| ||||||||||| |||||||| |||| || |||||||| ||||||||
Sbjct 592966 CTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCCTCCAGCTGCTTTCCGGCGAA 592907
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
||||| |||||||| || | || | | |||||||||| |||||| ||||| |
Sbjct 592906 GATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTT 592847
Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | | || ||| | || || |||| |||||||| ||||| ||||| || || ||
Sbjct 592846 CTCAATGGTATCGGATGGCTCAACTTCCAAGGTGATGGTCTTGCCAGTCAGAGTCTTCAC 592787
Query 46582 AAAGATTTGCAT 46593
||||| |||||
Sbjct 592786 GAAGATCTGCAT 592775
Score = 134 bits (148), Expect = 2e-26
Identities = 145/192 (76%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| ||||||||||| |||||||| |||| || |||||||| ||||||||
Sbjct 593194 CTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCCTCCAGCTGCTTTCCGGCGAA 593135
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
||||| |||||||| || | || | | |||||||||| |||||| ||||| |
Sbjct 593134 GATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACATT 593075
Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | | || ||| | || || |||| |||||||| ||||| ||||| || || ||
Sbjct 593074 CTCAATGGTATCGGATGGCTCAACTTCCAAGGTGATGGTCTTGCCAGTCAGAGTCTTCAC 593015
Query 46582 AAAGATTTGCAT 46593
||||| |||||
Sbjct 593014 GAAGATCTGCAT 593003
Score = 131 bits (144), Expect = 2e-25
Identities = 144/192 (75%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| ||||||||||| |||||||| |||| || |||||||| ||||||||
Sbjct 592738 CTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCCTCCAGCTGCTTTCCGGCGAA 592679
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
||||| |||||||| || | || | | ||||||||| |||||| ||||| |
Sbjct 592678 GATCAAACGCTGCTGATCTGGGGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTT 592619
Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | | || ||| | || || |||| |||||||| ||||| ||||| || || ||
Sbjct 592618 CTCAATGGTATCGGATGGCTCAACTTCCAAGGTGATGGTCTTGCCAGTCAGAGTCTTCAC 592559
Query 46582 AAAGATTTGCAT 46593
||||| |||||
Sbjct 592558 GAAGATCTGCAT 592547
Score = 93.3 bits (102), Expect = 5e-14
Identities = 104/134 (78%), Gaps = 5/134 (4%)
Strand=Plus/Minus
Query 46378 ACGCAACACCAGATGCAATGT--ACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGC 46435
|||||| |||| || | || |||| |||| ||||| ||||||||||| ||||||||
Sbjct 594287 ACGCAAGACCAAGTGAAGGGTCGACTC-CCTTCTGGATGTTGTAGTCGGACAGAGTGCGT 594229
Query 46436 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCC 46495
|||| || |||||||| |||||||| ||||| |||||||| || | || | | ||||
Sbjct 594228 CCGTCCTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTG-GGGGAATCCCTCC 594170
Query 46496 TTGTCCATGATCTT 46509
||||| ||||||
Sbjct 594169 -TGTCCTGGATCTT 594157
>seq1553
Length=5866729
Score = 131 bits (144), Expect = 2e-25
Identities = 155/210 (74%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443
||||| |||| || |||||| ||||| ||||||||||| |||||||| | || ||
Sbjct 2325468 CACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCCTC 2325409
Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503
||||||||||| ||||| |||| |||||||| || | || | || |||||| |||
Sbjct 2325408 CAGCTGCTTGCCCGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTATCCTG 2325349
Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563
|||||| ||||| || | | ||||| | ||||| |||| |||||||| ||
Sbjct 2325348 GATCTTAGCCTTGACATTCTCGATGGTGTCAGAAGGCTCCACCTCCAAGGTGATGGTCTT 2325289
Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
||| || || ||||| || ||||| |||||
Sbjct 2325288 GCCGGTGAGGGTTTTCACGAAGATCTGCAT 2325259
>seq1556
Length=7591821
Score = 104 bits (114), Expect = 3e-17
Identities = 138/192 (72%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| ||||| ||||| || ||||| |||| || |||||||||||||||||
Sbjct 3893696 CTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCGTCCTCAAGCTGCTTGCCGGCGAA 3893755
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|||| |||||||| || | || | | |||||| ||| ||||| ||| | |
Sbjct 3893756 GATCAGACGCTGCTGATCTGGGGGGATTCCCTCCTTATCCTGAATCTTAGCCTTAACATT 3893815
Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | | ||||| || ||| || || | ||||||| || || |||| || || ||
Sbjct 3893816 CTCGATGGTGTCCGACGGTTCTACCTCAAGGTTGATGGTCTTTCCGGTCAAAGTCTTCAC 3893875
Query 46582 AAAGATTTGCAT 46593
||||| |||||
Sbjct 3893876 GAAGATCTGCAT 3893887
Score = 100 bits (110), Expect = 3e-16
Identities = 140/195 (72%), Gaps = 6/195 (3%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| ||||| ||||| || ||||| |||| || || ||||||||||||||
Sbjct 3892784 CTCCTTCTGGATGTTGTAATCGGAAAGGGTGCGTCCGTCTTCCAGTTGCTTGCCGGCGAA 3892843
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|| | |||||||| || | || | | |||||| ||| ||||| ||| | |
Sbjct 3892844 GATGAGACGCTGCTGATCTGGGGGGATTCCCTCCTTATCCTGAATCTTAGCCTTCACATT 3892903
Query 46522 CGCCACCGTGTCGCTCGAT---TCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578
| | | ||||| |||| || || |||| |||||||| ||||| || || || ||
Sbjct 3892904 CTCAATGGTGTC---CGATGGCTCAACCTCCAAAGTGATGGTCTTGCCAGTGAGGGTCTT 3892960
Query 46579 AACAAAGATTTGCAT 46593
|| ||||| |||||
Sbjct 3892961 CACGAAGATCTGCAT 3892975
Score = 100 bits (110), Expect = 3e-16
Identities = 140/195 (72%), Gaps = 6/195 (3%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| ||||| ||||| || ||||| |||| || || ||||||||||||||
Sbjct 3893468 CTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCGTCTTCCAGTTGCTTGCCGGCGAA 3893527
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|| | |||||||| || | || | | |||||| ||| ||||| ||| | |
Sbjct 3893528 GATGAGACGCTGCTGATCTGGGGGGATTCCCTCCTTATCCTGAATCTTAGCCTTCACATT 3893587
Query 46522 CGCCACCGTGTCGCTCGAT---TCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578
| | | ||||| |||| || || |||| |||||||| ||||| || || || ||
Sbjct 3893588 CTCAATGGTGTC---CGATGGCTCAACCTCCAAAGTGATGGTCTTGCCAGTGAGGGTCTT 3893644
Query 46579 AACAAAGATTTGCAT 46593
|| ||||| |||||
Sbjct 3893645 CACGAAGATCTGCAT 3893659
Score = 100 bits (110), Expect = 3e-16
Identities = 140/195 (72%), Gaps = 6/195 (3%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| ||||| ||||| || ||||| |||| || || ||||||||||||||
Sbjct 3894152 CTCCTTCTGGATGTTGTAATCGGAAAGGGTGCGTCCGTCCTCCAGTTGCTTGCCGGCGAA 3894211
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|| | |||||||| || | || | | |||||| ||| ||||| ||| | |
Sbjct 3894212 GATGAGACGCTGCTGATCTGGGGGGATTCCCTCCTTATCCTGAATCTTAGCCTTCACATT 3894271
Query 46522 CGCCACCGTGTCGCTCGAT---TCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578
| | | ||||| |||| || || |||| |||||||| ||||| || || || ||
Sbjct 3894272 CTCAATGGTGTC---CGATGGCTCAACCTCCAAAGTGATGGTCTTGCCAGTGAGGGTCTT 3894328
Query 46579 AACAAAGATTTGCAT 46593
|| ||||| |||||
Sbjct 3894329 CACGAAGATCTGCAT 3894343
Score = 100 bits (110), Expect = 3e-16
Identities = 140/195 (72%), Gaps = 6/195 (3%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| || || ||||| ||||| || ||||| |||| || || || |||||||||||
Sbjct 3894380 CTCCTTCTGAATGTTGTAATCGGAAAGGGTGCGTCCGTCCTCCAGTTGTTTGCCGGCGAA 3894439
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|| | |||||||| || | || | || ||||||||| |||||| ||| | |
Sbjct 3894440 GATGAGACGCTGCTGATCTGGGGGGATGCCCTCCTTGTCTTGGATCTTAGCCTTCACATT 3894499
Query 46522 CGCCACCGTGTCGCTCGAT---TCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578
| | | ||||| |||| || || |||| |||||||| ||||| || || || ||
Sbjct 3894500 CTCAATGGTGTC---CGATGGCTCAACCTCCAAAGTGATGGTCTTGCCAGTGAGGGTCTT 3894556
Query 46579 AACAAAGATTTGCAT 46593
|| ||||| |||||
Sbjct 3894557 CACGAAGATCTGCAT 3894571
Score = 100 bits (110), Expect = 3e-16
Identities = 140/195 (72%), Gaps = 6/195 (3%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| || || ||||| ||||| || ||||| |||| || || || |||||||||||
Sbjct 3895064 CTCCTTCTGAATGTTGTAATCGGAAAGGGTGCGTCCGTCCTCCAGTTGTTTGCCGGCGAA 3895123
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|| | |||||||| || | || | || ||||||||| |||||| ||| | |
Sbjct 3895124 GATGAGACGCTGCTGATCTGGGGGGATGCCCTCCTTGTCTTGGATCTTAGCCTTCACATT 3895183
Query 46522 CGCCACCGTGTCGCTCGAT---TCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578
| | | ||||| |||| || || |||| |||||||| ||||| || || || ||
Sbjct 3895184 CTCAATGGTGTC---CGATGGCTCAACCTCCAAAGTGATGGTCTTGCCAGTGAGGGTCTT 3895240
Query 46579 AACAAAGATTTGCAT 46593
|| ||||| |||||
Sbjct 3895241 CACGAAGATCTGCAT 3895255
Score = 96.9 bits (106), Expect = 4e-15
Identities = 139/195 (71%), Gaps = 6/195 (3%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| ||||| ||||| || ||||| |||| || || || |||||||||||
Sbjct 3894836 CTCCTTCTGGATGTTGTAATCGGAAAGGGTGCGTCCGTCCTCCAGTTGTTTGCCGGCGAA 3894895
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|| | |||||||| || | || | | |||||| ||| ||||| ||| | |
Sbjct 3894896 GATGAGACGCTGCTGATCTGGGGGGATTCCCTCCTTATCCTGAATCTTAGCCTTCACATT 3894955
Query 46522 CGCCACCGTGTCGCTCGAT---TCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578
| | | ||||| |||| || || |||| |||||||| ||||| || || || ||
Sbjct 3894956 CTCAATGGTGTC---CGATGGCTCAACCTCCAAAGTGATGGTCTTGCCAGTGAGGGTCTT 3895012
Query 46579 AACAAAGATTTGCAT 46593
|| ||||| |||||
Sbjct 3895013 CACGAAGATCTGCAT 3895027
Score = 95.1 bits (104), Expect = 1e-14
Identities = 136/192 (71%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| ||||| ||||| || ||||| |||| || || ||||||||||||||
Sbjct 3893012 CTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCGTCTTCCAGTTGCTTGCCGGCGAA 3893071
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|| | |||||||| || | | | | |||||| ||| ||||| ||| | |
Sbjct 3893072 GATGAGACGCTGCTGATCTGGGGAGATTCCCTCCTTATCCTGAATCTTAGCCTTAACATT 3893131
Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | | ||||| || ||| || || | |||||||| || || |||| || || ||
Sbjct 3893132 CTCGATGGTGTCCGACGGTTCTACCTCAAGAGTGATGGTCTTTCCGGTCAAAGTCTTCAC 3893191
Query 46582 AAAGATTTGCAT 46593
||||| |||||
Sbjct 3893192 GAAGATCTGCAT 3893203
>seq1555
Length=7220098
Score = 93.3 bits (102), Expect = 5e-14
Identities = 149/214 (70%), Gaps = 0/214 (0%)
Strand=Plus/Minus
Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443
||||| |||| || |||||| || || || ||||| || || ||||| | || ||
Sbjct 5837927 CACCAAGTGCAGAGTGGACTCCTTCTGAATGTTATAGTCAGAGAGGGTGCGGCCATCTTC 5837868
Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503
||||||||||| ||||| |||| |||||||| || | || | | || ||||||
Sbjct 5837867 CAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTG 5837808
Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563
||||| |||| | | | || || || ||| || || | |||||||| ||
Sbjct 5837807 AATCTTGGCTTTGACATTTTCGATAGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTT 5837748
Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597
|||||| || || ||||| ||||| ||||| |||
Sbjct 5837747 GCCCGTGAGGGTCTTAACGAAGATCTGCATCTTG 5837714
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565134318414120
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