Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18] 14,731 sequences; 166,592,095 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq1554 140 4e-28 seq1553 131 2e-25 seq1556 104 3e-17 seq1555 93.3 5e-14 >seq1554 Length=6179234 Score = 140 bits (154), Expect = 4e-28 Identities = 163/220 (74%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||| |||| ||| | || |||||| ||||| ||||||||||| |||||||| | Sbjct 592534 ACGCAGGACCAAATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCC 592475 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 ||| || | |||||| |||||||| ||||| |||||||| || | || | | |||||| Sbjct 592474 GTCCTCCAACTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTT 592415 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 |||| |||||| ||||| || | | || ||| | || || |||| ||||| Sbjct 592414 GTCCTGGATCTTGGCCTTGACGTTCTCGATGGTATCGGATGGCTCAACCTCCAAAGTGAT 592355 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 ||| ||||| ||||| || ||||| || |||||||| ||| Sbjct 592354 GGTCTTGCCGGTCAGAGTCTTAACGAAAATTTGCATATTG 592315 Score = 134 bits (148), Expect = 2e-26 Identities = 145/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| |||||||| |||| || |||||||| |||||||| Sbjct 592966 CTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCCTCCAGCTGCTTTCCGGCGAA 592907 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| |||||||| || | || | | |||||||||| |||||| ||||| | Sbjct 592906 GATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTT 592847 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | || ||| | || || |||| |||||||| ||||| ||||| || || || Sbjct 592846 CTCAATGGTATCGGATGGCTCAACTTCCAAGGTGATGGTCTTGCCAGTCAGAGTCTTCAC 592787 Query 46582 AAAGATTTGCAT 46593 ||||| ||||| Sbjct 592786 GAAGATCTGCAT 592775 Score = 134 bits (148), Expect = 2e-26 Identities = 145/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| |||||||| |||| || |||||||| |||||||| Sbjct 593194 CTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCCTCCAGCTGCTTTCCGGCGAA 593135 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| |||||||| || | || | | |||||||||| |||||| ||||| | Sbjct 593134 GATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACATT 593075 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | || ||| | || || |||| |||||||| ||||| ||||| || || || Sbjct 593074 CTCAATGGTATCGGATGGCTCAACTTCCAAGGTGATGGTCTTGCCAGTCAGAGTCTTCAC 593015 Query 46582 AAAGATTTGCAT 46593 ||||| ||||| Sbjct 593014 GAAGATCTGCAT 593003 Score = 131 bits (144), Expect = 2e-25 Identities = 144/192 (75%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| |||||||| |||| || |||||||| |||||||| Sbjct 592738 CTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCCTCCAGCTGCTTTCCGGCGAA 592679 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| |||||||| || | || | | ||||||||| |||||| ||||| | Sbjct 592678 GATCAAACGCTGCTGATCTGGGGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTT 592619 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | || ||| | || || |||| |||||||| ||||| ||||| || || || Sbjct 592618 CTCAATGGTATCGGATGGCTCAACTTCCAAGGTGATGGTCTTGCCAGTCAGAGTCTTCAC 592559 Query 46582 AAAGATTTGCAT 46593 ||||| ||||| Sbjct 592558 GAAGATCTGCAT 592547 Score = 93.3 bits (102), Expect = 5e-14 Identities = 104/134 (78%), Gaps = 5/134 (4%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGT--ACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGC 46435 |||||| |||| || | || |||| |||| ||||| ||||||||||| |||||||| Sbjct 594287 ACGCAAGACCAAGTGAAGGGTCGACTC-CCTTCTGGATGTTGTAGTCGGACAGAGTGCGT 594229 Query 46436 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCC 46495 |||| || |||||||| |||||||| ||||| |||||||| || | || | | |||| Sbjct 594228 CCGTCCTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTG-GGGGAATCCCTCC 594170 Query 46496 TTGTCCATGATCTT 46509 ||||| |||||| Sbjct 594169 -TGTCCTGGATCTT 594157 >seq1553 Length=5866729 Score = 131 bits (144), Expect = 2e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||||| |||| || |||||| ||||| ||||||||||| |||||||| | || || Sbjct 2325468 CACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCCTC 2325409 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 ||||||||||| ||||| |||| |||||||| || | || | || |||||| ||| Sbjct 2325408 CAGCTGCTTGCCCGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTATCCTG 2325349 Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 |||||| ||||| || | | ||||| | ||||| |||| |||||||| || Sbjct 2325348 GATCTTAGCCTTGACATTCTCGATGGTGTCAGAAGGCTCCACCTCCAAGGTGATGGTCTT 2325289 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| || || ||||| || ||||| ||||| Sbjct 2325288 GCCGGTGAGGGTTTTCACGAAGATCTGCAT 2325259 >seq1556 Length=7591821 Score = 104 bits (114), Expect = 3e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||| ||||| || ||||| |||| || ||||||||||||||||| Sbjct 3893696 CTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCGTCCTCAAGCTGCTTGCCGGCGAA 3893755 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| |||||||| || | || | | |||||| ||| ||||| ||| | | Sbjct 3893756 GATCAGACGCTGCTGATCTGGGGGGATTCCCTCCTTATCCTGAATCTTAGCCTTAACATT 3893815 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | ||||| || ||| || || | ||||||| || || |||| || || || Sbjct 3893816 CTCGATGGTGTCCGACGGTTCTACCTCAAGGTTGATGGTCTTTCCGGTCAAAGTCTTCAC 3893875 Query 46582 AAAGATTTGCAT 46593 ||||| ||||| Sbjct 3893876 GAAGATCTGCAT 3893887 Score = 100 bits (110), Expect = 3e-16 Identities = 140/195 (72%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||| ||||| || ||||| |||| || || |||||||||||||| Sbjct 3892784 CTCCTTCTGGATGTTGTAATCGGAAAGGGTGCGTCCGTCTTCCAGTTGCTTGCCGGCGAA 3892843 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | |||||||| || | || | | |||||| ||| ||||| ||| | | Sbjct 3892844 GATGAGACGCTGCTGATCTGGGGGGATTCCCTCCTTATCCTGAATCTTAGCCTTCACATT 3892903 Query 46522 CGCCACCGTGTCGCTCGAT---TCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | | ||||| |||| || || |||| |||||||| ||||| || || || || Sbjct 3892904 CTCAATGGTGTC---CGATGGCTCAACCTCCAAAGTGATGGTCTTGCCAGTGAGGGTCTT 3892960 Query 46579 AACAAAGATTTGCAT 46593 || ||||| ||||| Sbjct 3892961 CACGAAGATCTGCAT 3892975 Score = 100 bits (110), Expect = 3e-16 Identities = 140/195 (72%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||| ||||| || ||||| |||| || || |||||||||||||| Sbjct 3893468 CTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCGTCTTCCAGTTGCTTGCCGGCGAA 3893527 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | |||||||| || | || | | |||||| ||| ||||| ||| | | Sbjct 3893528 GATGAGACGCTGCTGATCTGGGGGGATTCCCTCCTTATCCTGAATCTTAGCCTTCACATT 3893587 Query 46522 CGCCACCGTGTCGCTCGAT---TCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | | ||||| |||| || || |||| |||||||| ||||| || || || || Sbjct 3893588 CTCAATGGTGTC---CGATGGCTCAACCTCCAAAGTGATGGTCTTGCCAGTGAGGGTCTT 3893644 Query 46579 AACAAAGATTTGCAT 46593 || ||||| ||||| Sbjct 3893645 CACGAAGATCTGCAT 3893659 Score = 100 bits (110), Expect = 3e-16 Identities = 140/195 (72%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||| ||||| || ||||| |||| || || |||||||||||||| Sbjct 3894152 CTCCTTCTGGATGTTGTAATCGGAAAGGGTGCGTCCGTCCTCCAGTTGCTTGCCGGCGAA 3894211 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | |||||||| || | || | | |||||| ||| ||||| ||| | | Sbjct 3894212 GATGAGACGCTGCTGATCTGGGGGGATTCCCTCCTTATCCTGAATCTTAGCCTTCACATT 3894271 Query 46522 CGCCACCGTGTCGCTCGAT---TCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | | ||||| |||| || || |||| |||||||| ||||| || || || || Sbjct 3894272 CTCAATGGTGTC---CGATGGCTCAACCTCCAAAGTGATGGTCTTGCCAGTGAGGGTCTT 3894328 Query 46579 AACAAAGATTTGCAT 46593 || ||||| ||||| Sbjct 3894329 CACGAAGATCTGCAT 3894343 Score = 100 bits (110), Expect = 3e-16 Identities = 140/195 (72%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| || || ||||| ||||| || ||||| |||| || || || ||||||||||| Sbjct 3894380 CTCCTTCTGAATGTTGTAATCGGAAAGGGTGCGTCCGTCCTCCAGTTGTTTGCCGGCGAA 3894439 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | |||||||| || | || | || ||||||||| |||||| ||| | | Sbjct 3894440 GATGAGACGCTGCTGATCTGGGGGGATGCCCTCCTTGTCTTGGATCTTAGCCTTCACATT 3894499 Query 46522 CGCCACCGTGTCGCTCGAT---TCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | | ||||| |||| || || |||| |||||||| ||||| || || || || Sbjct 3894500 CTCAATGGTGTC---CGATGGCTCAACCTCCAAAGTGATGGTCTTGCCAGTGAGGGTCTT 3894556 Query 46579 AACAAAGATTTGCAT 46593 || ||||| ||||| Sbjct 3894557 CACGAAGATCTGCAT 3894571 Score = 100 bits (110), Expect = 3e-16 Identities = 140/195 (72%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| || || ||||| ||||| || ||||| |||| || || || ||||||||||| Sbjct 3895064 CTCCTTCTGAATGTTGTAATCGGAAAGGGTGCGTCCGTCCTCCAGTTGTTTGCCGGCGAA 3895123 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | |||||||| || | || | || ||||||||| |||||| ||| | | Sbjct 3895124 GATGAGACGCTGCTGATCTGGGGGGATGCCCTCCTTGTCTTGGATCTTAGCCTTCACATT 3895183 Query 46522 CGCCACCGTGTCGCTCGAT---TCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | | ||||| |||| || || |||| |||||||| ||||| || || || || Sbjct 3895184 CTCAATGGTGTC---CGATGGCTCAACCTCCAAAGTGATGGTCTTGCCAGTGAGGGTCTT 3895240 Query 46579 AACAAAGATTTGCAT 46593 || ||||| ||||| Sbjct 3895241 CACGAAGATCTGCAT 3895255 Score = 96.9 bits (106), Expect = 4e-15 Identities = 139/195 (71%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||| ||||| || ||||| |||| || || || ||||||||||| Sbjct 3894836 CTCCTTCTGGATGTTGTAATCGGAAAGGGTGCGTCCGTCCTCCAGTTGTTTGCCGGCGAA 3894895 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | |||||||| || | || | | |||||| ||| ||||| ||| | | Sbjct 3894896 GATGAGACGCTGCTGATCTGGGGGGATTCCCTCCTTATCCTGAATCTTAGCCTTCACATT 3894955 Query 46522 CGCCACCGTGTCGCTCGAT---TCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | | ||||| |||| || || |||| |||||||| ||||| || || || || Sbjct 3894956 CTCAATGGTGTC---CGATGGCTCAACCTCCAAAGTGATGGTCTTGCCAGTGAGGGTCTT 3895012 Query 46579 AACAAAGATTTGCAT 46593 || ||||| ||||| Sbjct 3895013 CACGAAGATCTGCAT 3895027 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||| ||||| || ||||| |||| || || |||||||||||||| Sbjct 3893012 CTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCGTCTTCCAGTTGCTTGCCGGCGAA 3893071 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | |||||||| || | | | | |||||| ||| ||||| ||| | | Sbjct 3893072 GATGAGACGCTGCTGATCTGGGGAGATTCCCTCCTTATCCTGAATCTTAGCCTTAACATT 3893131 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | ||||| || ||| || || | |||||||| || || |||| || || || Sbjct 3893132 CTCGATGGTGTCCGACGGTTCTACCTCAAGAGTGATGGTCTTTCCGGTCAAAGTCTTCAC 3893191 Query 46582 AAAGATTTGCAT 46593 ||||| ||||| Sbjct 3893192 GAAGATCTGCAT 3893203 >seq1555 Length=7220098 Score = 93.3 bits (102), Expect = 5e-14 Identities = 149/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||||| |||| || |||||| || || || ||||| || || ||||| | || || Sbjct 5837927 CACCAAGTGCAGAGTGGACTCCTTCTGAATGTTATAGTCAGAGAGGGTGCGGCCATCTTC 5837868 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 ||||||||||| ||||| |||| |||||||| || | || | | || |||||| Sbjct 5837867 CAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTG 5837808 Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 ||||| |||| | | | || || || ||| || || | |||||||| || Sbjct 5837807 AATCTTGGCTTTGACATTTTCGATAGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTT 5837748 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 |||||| || || ||||| ||||| ||||| ||| Sbjct 5837747 GCCCGTGAGGGTCTTAACGAAGATCTGCATCTTG 5837714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565134318414120