Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18] 14,731 sequences; 166,592,095 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq1555 107 8e-18 seq1554 93.3 2e-13 >seq1555 Length=7220098 Score = 107 bits (118), Expect = 8e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || |||||||| || || || || || || || |||||||| || ||| | || Sbjct 5837718 ATGCAGATCTTCGTTAAGACCCTCACGGGCAAGACCATCACTCTTGAGGTCGAACCGTCG 5837777 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| || ||| | | ||| || ||||| || || |||||||||||||| ||||| Sbjct 5837778 GATACTATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGATCAG 5837837 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||| | || ||| | || || || || |||||||| | || | | || ||||| Sbjct 5837838 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTATAAC 5837897 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 ||| | ||||| | || || ||||| || Sbjct 5837898 ATTCAGAAGGAGTCCACTCTGCACTTGGT 5837926 >seq1554 Length=6179234 Score = 93.3 bits (102), Expect = 2e-13 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || |||||||| || || || || | || ||||| |||| Sbjct 592547 ATGCAGATCTTCGTGAAGACTCTGACTGGCAAGACCATCACCTTGGAAGTTGAGCCATCC 592606 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| |||||| | || || || || || ||||||||||| || || ||||| Sbjct 592607 GATACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCCCCAGATCAG 592666 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||||| || ||| | || || || || || || ||| | ||| || | || || || Sbjct 592667 CAGCGTTTGATCTTCGCCGGAAAGCAGCTGGAGGACGGACGCACTCTGTCCGACTACAAC 592726 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 || | ||||| | || |||||||| || Sbjct 592727 ATCCAGAAGGAGTCGACCCTTCACTTGGT 592755 Score = 84.2 bits (92), Expect = 9e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||||||||| || ||||| || || || || ||| | || ||||| |||| Sbjct 592319 ATGCAAATTTTCGTTAAGACTCTGACCGGCAAGACCATCACTTTGGAGGTTGAGCCATCC 592378 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| ||| || | || || || || || ||||| ||||| || || ||||| Sbjct 592379 GATACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGATCAG 592438 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||||| || ||| | || || || | || || ||| | ||| || | || || || Sbjct 592439 CAGCGTTTGATCTTCGCCGGAAAGCAGTTGGAGGACGGACGCACTCTGTCCGACTACAAC 592498 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 || | ||||| | || ||||| || || Sbjct 592499 ATCCAGAAGGAGTCGACCCTTCATTTGGT 592527 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975345501056948