Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18] 14,731 sequences; 166,592,095 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq1558 123 2e-22 >seq1558 Length=21120651 Score = 123 bits (136), Expect = 2e-22 Identities = 453/705 (64%), Gaps = 6/705 (1%) Strand=Plus/Plus Query 518012 GTTACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTT 518071 || || ||||| || || || || ||||| |||| | |||| ||| | ||| | | Sbjct 10881023 GTGACTAGACGGTTGTCGAAGTCCTCACCACCCAGATGCGTATCTCCGGCCGTGGACTTG 10881082 Query 518072 ACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATA 518131 || | ||| | || || || | |||| | | ||||| ||| || || |||| | Sbjct 10881083 ACCTCGAAGATACCGTCATCGATCGACAGGATGGACACATCGAAGGTGCCGCCGCCCAGA 10881142 Query 518132 TCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCA 518191 || || ||||| || || ||| | || || || ||||| || || | |||| Sbjct 10881143 TCGAAGATAAGCACGTTGCGCTCTCCAACAGCCTTCTTGTCCAGACCGTAAGCGATAGCA 10881202 Query 518192 GCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCT 518251 || ||||| || || || || || | || ||||| ||||| || || |||| || || Sbjct 10881203 GCGGCAGTGGGCTCGTTGATGATACGCAGCACATTCAGACCGGCGATGGTTCCGGCGTCC 10881262 Query 518252 TTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTT 518311 || || || || | || || ||||| || || || || || || || || || | || Sbjct 10881263 TTGGTCGCCTGACGCTGAGAGTCGTTGAAGTAGGCCGGCACGGTGATGACAGCGTTGGTC 10881322 Query 518312 ACTTCTTTACCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAA 518371 || || || | ||| || || || | ||||| || | | | ||| || || Sbjct 10881323 ACAGTCTTGCCCAGATAGGCCTCGGCGGTCTCCTTCATCTTGGTGAGCACCATCGAGGAG 10881382 Query 518372 ATTTGTTCTGGGGAATATTG-CTTGGATTCATTTTGATATGATACTTCAAAATATGGTTT 518430 || | || |||||| | | ||| || | | || | || || | | || || Sbjct 10881383 ATCTCCTC-GGGGAAGAAGGTCTTCTTCTCGTCCTTGTAGGTCACCTCGATCTTGGGCTT 10881441 Query 518431 ATTACCAACATTAATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGG-- 518488 | | | | | || | || ||||||| ||||| || || || ||| || Sbjct 10881442 GCCATCGGCGCTGACCACATCGAAGGGCCAGTGCTTCATGTCAGACTG--CACGGCGGCA 10881499 Query 518489 TCATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATT 518548 |||| || | | |||||| || || || || || || || || | ||| || || || Sbjct 10881500 TCATCGAACTTGCGACCAATCAAGCGCTTGGCGTCGAAGATCGTCTGGGTCGGGTTCATC 10881559 Query 518549 GCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATAT 518608 || | || | ||||| |||||||| |||||| | || || || || || | |||||| Sbjct 10881560 GCCACCTGGTTCTTGGCGGCATCTCCGATCAGACGCTCCGTATCGGTGAAGGCAACATAG 10881619 Query 518609 GATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCAT 518668 |||||||| || |||||||| || || || || || || || || || |||| || | Sbjct 10881620 GATGGAGTGGTACGATTACCCTGGTCGTTGGCGATGATCTCGACCTTGCCATGCTGGAAC 10881679 Query 518669 ACACCTACACAACTAAAAGTTGTTCCTAAATCAATACCAATAGCA 518713 || || || || | || || || ||||||||||||| |||| Sbjct 10881680 ACGCCCACGCACGAGTAGGTGGTGCCCAAATCAATACCAACAGCA 10881724 Score = 105 bits (116), Expect = 5e-17 Identities = 271/413 (66%), Gaps = 0/413 (0%) Strand=Plus/Minus Query 517259 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 517318 || |||||||| || || ||||||||||| | ||||| || || || | || || || Sbjct 6117178 GCCGTCACATTGAGTATTCCATTGGCATCGATGTCAAAGGTCACCTCCACCTGGGGCACT 6117119 Query 517319 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 517378 || | |||| ||||| || | | ||| | ||||| | || ||||| Sbjct 6117118 CCGCGTGGAGCCGGTGGAATTGACGAGAGCTCAAACTTACCCAGGCTGTTGTTATCCCGC 6117059 Query 517379 GTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAA 517438 || | |||||||||||||| | |||||| || | | || || || | |||| Sbjct 6117058 GTCATCGCCCGTTCACCCTCGAACACCTGGATAAGCACACCTGGCTGGTTGTCCGCATAA 6116999 Query 517439 GTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTC 517498 || ||||| | | | || || || || || ||||| || | ||| | ||||| Sbjct 6116998 GTGGTAAAGATTTGCGTTTGCTTGGTGGGTATGGTGGTGTTCCTTTTAATCAGCGTGGTC 6116939 Query 517499 ATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATA 517558 || | ||||| || || || | ||| ||||| |||||||||||||| | |||| | | Sbjct 6116938 ATCACTCCACCAGCGGTCTCAATACCCAGAGACAGAGGAGTGACATCGAGCAGGAGCAGA 6116879 Query 517559 TTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATAT 517618 | || | | || || | ||| ||| ||||| || || | ||||||||||| Sbjct 6116878 TCCTGCACTGCCTCCGATGTATCGCCATGAAGGATAGCCGCCTGCACTGCAGCACCATAG 6116819 Query 517619 GCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAA 517671 ||||| || || || ||||| | | | ||||| | || || |||||||| Sbjct 6116818 GCAACCGCCTCGTCGGGATTGATGGACTTGTTTAGATCCTTGCCGTTGAAAAA 6116766 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780091399256086