Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18] 14,731 sequences; 166,592,095 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq1551 95.1 2e-14 seq1557 93.3 5e-14 >seq1551 Length=3727775 Score = 95.1 bits (104), Expect = 2e-14 Identities = 170/246 (69%), Gaps = 2/246 (1%) Strand=Plus/Plus Query 176020 ATCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATATT 176079 ||| || || ||| | | || |||||||| ||||| | |||||||| ||||| || || Sbjct 3065294 ATCTTTGCCTCCCGTCAAGCGGGTACCAAATTGACCGCGTGGCTCAAGCAGATTAATGTT 3065353 Query 176080 GTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTG-TCCGCGAGAGAGACTTCAC 176138 ||| | ||||| | | | |||| || || || || || || || || || || | Sbjct 3065354 GTTCGCACCCACAAAATTCTGGGCCAGATTTACGATTGTCATCTGC-AGGGATACCTCTC 3065412 Query 176139 CGTGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAACTGCGCCACTTTCATCTCAT 176198 |||||||||| || | |||| || || || | | | ||| ||||| |||| |||| Sbjct 3065413 CGTGGTGGTAGGCCGACATCTCCGCCACTGATCCGGATAGCTGGGCCACCTTCACCTCAC 3065472 Query 176199 CCTTGAGATTCTTGTGGAAACATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGACCAT 176258 |||| |||| | | |||||| | | |||| ||||| || || ||||| | |||| Sbjct 3065473 GCTTGTCATTCCTTTTGAAACAAGTGAACATCACCTTCCGCTGACCCGGCTTCAAGCCAT 3065532 Query 176259 CCGCCA 176264 || ||| Sbjct 3065533 CCACCA 3065538 >seq1557 Length=14215200 Score = 93.3 bits (102), Expect = 5e-14 Identities = 289/442 (65%), Gaps = 4/442 (1%) Strand=Plus/Minus Query 102180 GAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCT 102239 ||||| || |||| ||||| || ||||| || |||||| || |||| | | Sbjct 5422107 GAGCGCATCATCGCCTTTGCCGCCGTGGAGGGCATTTTCTTCAGCGGCAGCTTCGCCTCC 5422048 Query 102240 ATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATC 102299 |||| ||||| |||||||| ||||| ||||| || | ||||||||||||||| ||| Sbjct 5422047 ATTTTCTGGCTTAAGAAGCGCGGTCTGATGCCTGGATTGACCTTCTCCAACGAGCTGATC 5421988 Query 102300 TCTCGTGACGAGGGACTCCACCAAGAGTTTGCGGTG-GAACTTTTCAAATTATTGCGTAT 102358 ||||| |||||||| | ||| || ||||| ||| | || || | | | | Sbjct 5421987 TCTCGCGACGAGGGCTTGCACTGCGACTTTGCCGTGCTGATGTTCCAGCACCTGGTGCAG 5421928 Query 102359 TAAACCAACGACTGAGACTATTCAT-TCTATTGTTAAGGAAGCCGTTGAGATTGAGAAGG 102417 | |||| | ||| | |||| || | || || || | || ||| ||| Sbjct 5421927 CGACCCAA-GCGCGAG-CGCATCATCGAGATCATCCGCGACGCGGTGGCCATAGAGCAGG 5421870 Query 102418 GATTCATATTGGATGCCCTTCCATGCGCTCTCATCGGTATGAATTCTGAAAAGATGTCCG 102477 ||| | |||||||| || | | | ||||| ||||||| || ||||||| Sbjct 5421869 AGTTCCTCACCGATGCCCTGCCCGTCAATTTGATCGGCATGAATTGCGACCTGATGTCCC 5421810 Query 102478 AATATATTGAGTATGTATCTGATAGATTGTTGAAGCAGATCGGGGTGCCTCCAATTTGGA 102537 | || ||||||| ||| | || | ||| | | || | || || || | | Sbjct 5421809 AGTACATTGAGTTCGTAGCGGACCGTTTGCTCGTGGAGTTGGGCGTTGGAAAGATCTACA 5421750 Query 102538 ACTCCAAGAATCCATTTGACTTCATGGAGAACATTAGCCTCGACGGGAAGACAAACTTCT 102597 || |||| || |||||| |||||||||||| || || ||||| ||||| ||||| | Sbjct 5421749 ACACCAAAAACCCATTTAACTTCATGGAGATGATATCGCTGGACGGAAAGACCAACTTTT 5421690 Query 102598 TCGAAAAGAGGGTTGGGGACTA 102619 |||| |||| ||| | ||| || Sbjct 5421689 TCGAGAAGAAGGTGGCGGAGTA 5421668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620628098046320