Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18] 14,731 sequences; 166,592,095 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq1555 140 4e-28 seq1551 122 1e-22 >seq1555 Length=7220098 Score = 140 bits (154), Expect = 4e-28 Identities = 930/1479 (63%), Gaps = 66/1479 (4%) Strand=Plus/Plus Query 109401 CTTCGAGCGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCAT 109460 ||| | ||| ||||| ||||| || ||||| ||||| || ||||| | ||| | || || Sbjct 5750506 CTTGGTGCGCAGATAGTACATTCCGGTTTTAAGACCTGCTTTCCAGGAGTAAAAGTGTAT 5750565 Query 109461 TGAAGAGAG-TTTGGAAAGTGTCGGACTCT-CCATAAACAAGTTCATCGACTGAGACTGA 109518 |||| || ||| | ||| | | ||| ||| | | ||| | ||||||| |||| Sbjct 5750566 GGAAGTCAGCTTTCCATAGTTTGG--CTCGGCCACATGTATGTTGAACGACTGACTCTGA 5750623 Query 109519 TCGATGAATCGACCACGATCAGCCGCCATGTCGATGATACACTTTTGGCTAA--TTTCCC 109576 || ||||| ||||||||| || ||||| | || | |||| | || | |||||| Sbjct 5750624 TCTATGAACGCACCACGATCGGCGGCCATTTTAATCGTGGACTT--GACTGAGATTTCCC 5750681 Query 109577 AGACAGTCTTGTACAAATTCTTG-ATATCATCGGGAATGTCCACGATGTTTTGAATAGAG 109635 | || ||||| |||| || || | | | | ||| ||| | | ||||||||||| || Sbjct 5750682 ACACCGTCTTATACAGAT-CTCGCACCTTCTGGGGGATGGTCTCAATGTTTTGAATCGAT 5750740 Query 109636 CCACCAGCCTTCACCATGA---GATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTG 109692 || || || | |||| | | |||||| || | ||| | | | || | Sbjct 5750741 CC-CCTGC--TGGATATGATCTGGTTCTTCATGTCGTCGTCCCACAAGTCCAGCTCGGTT 5750797 Query 109693 AGATCGT-CAACAAGATGCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAG 109751 || ||| |||||| ||| | ||||||||| ||||| || | || || ||| Sbjct 5750798 AGGTCGCGCAACAA-ATGATGGTTGACCACCTGGAATTCGCCGGACAGAACTCGCCGGGT 5750856 Query 109752 GTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGA 109811 ||| ||||| || |||||||| ||||| | ||||||||||| | || || || || || Sbjct 5750857 GTATATGTTCGTGGTGTAGGGCTCGAAGGATTCATTGTTGCCCATTATCTGAGCCGTAGA 5750916 Query 109812 AGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACCCTTCGTCTTTACCCGCTC 109871 || |||||||||||||| | ||| || ||| |||| ||| | | |||| | ||| Sbjct 5750917 TGCAGTGGGCATGGGAGCAACGAGCAGGGAGTTCCGGACACCGTGCTTCTTAATGGACTC 5750976 Query 109872 ACGCATTGCGTCCCAATCATAACGACCACTAAATTTAGTCTCACC--ATCCCACATATCT 109929 || | | ||| || |||| | || | |||| |||||||| || Sbjct 5750977 CTTCAATTTCTGCCAGTC-------CCAC-AGGTTCGTTGGCACCTTGTCCCACATGTCG 5751028 Query 109930 GGTTGAAGTACACC----CTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACGACCCCTC 109985 || | | || |||| | || |||| | | | ||||| | || || Sbjct 5751029 TACTGCAAAATTCCTTTGCTCA----CCGGGCTGCCCTCGTAGGTTTCGTATGCACCTTC 5751084 Query 109986 AACCTCGGCCAACTCGGATGAAGCCTCTAGTGCCGCATGATACATAGTCTCAAAAATATG 110045 || ||||| ||| | || || | || ||| || || || || || || || Sbjct 5751085 GGTCTGGGCCAGTTCGCAGCTGGCTTCCAAGGCGCCATAGTAAATGGTTTCGAATATCTG 5751144 Query 110046 AGCATTCATGAGGCGAGACTCTTCACAGTCGAAGGGAAGACCACAAAGAATAAACACATC 110105 ||||| || | | ||||| | ||| | || | || ||||| || |||| Sbjct 5751145 CTGATTCAAAAGACCGGCTTCTTCGCTTTCGTACGGGAAACGCATGAGAATCAAGGCATC 5751204 Query 110106 CGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGA-------GCGTC 110158 || | ||||||| ||| | || | ||| || ||| ||| || || || || Sbjct 5751205 AGCGAATCCCTGAATACCAATGCCCACGGGACGGTGCCTCAAATTGGACTTCCTTGCCTC 5751264 Query 110159 GAGCAGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAG 110218 |||| ||| ||| ||||| || || | | || ||||| || || || Sbjct 5751265 CGGCAG-------GGGATAATAGTTGATATCAATTATCTTGTTTAGATTTTTGGTAACTA 5751317 Query 110219 TCTTCGTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTATTGACATATT 110278 |||| |||| ||| | ||| || | |||| ||| || ||||| |||| | Sbjct 5751318 TCTTGGTGACTTCCTTGAGCTTCTTAAAATCATACG---TCTTCTCCGGCGTGACGAACA 5751374 Query 110279 TGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCA 110338 || ||| || || || || | ||||| || | | |||| || || ||||| | Sbjct 5751375 TGTTGAGGGCGATGGAGGCCAAGTTGCAGACTGCAATCTCATCCGGTGAGGAATATTCAA 5751434 Query 110339 AAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGG 110398 |||||||| ||||||||| | ||| ||| |||| |||| ||| || || Sbjct 5751435 CGATTTCCGTGCACAAGTTGCTGCACTTGATGGTGCCCACATTCTGCTGGTTGCTCTTCC 5751494 Query 110399 AGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAA 110458 |||||| || ||||| |||||||||| || | || || ||| || | || | | Sbjct 5751495 TGTTGCAAGCGTCCTTGAAGAGCATGTACGGATTTCCGGTCTCCACTTGCGCCTCAATGA 5751554 Query 110459 TGGCCTTCCATA--CATCGGCGGCGGGGACAGTTGCGTTAGCGAGACCTTCCTCCTCGTA 110516 |||| ||| | || | || || ||| ||| || |||| || | |||||| Sbjct 5751555 TGGCAAACCACAGGGATTG--AGCCTTAACCGTTCGGTTGGCCCGACCCTCTTGCTCGTA 5751612 Query 110517 CTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTGTC 110576 || ||||| | || ||||| | || |||| || ||||| ||||| Sbjct 5751613 TTTCTCGTACAGCTTTTCGAATTCATCGCCCCACACTTCGTGGAGACCAGGACACTTGTG 5751672 Query 110577 GGGACAGAAGAGGGACCAATTTCCACCCT---CCTCAACCCTCTTCATGAACAGGTCAGG 110633 ||| || | ||| ||||||| |||| | ||||||| | |||||||| || || || Sbjct 5751673 GGGGCACATGAGCGACCAAT---CACCGTTGGCCTCAACGCGTTTCATGAAGAGATCGGG 5751729 Query 110634 AATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCG 110693 ||||||| || | || || || || ||| |||||| | || ||| Sbjct 5751730 TATCCACAGGGCGTAAAACAGATCGCGTGCGCGATTCTCTTCTTTGCCCGTGTTCTTCTT 5751789 Query 110694 TAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCC 110753 || |||| || || | || |||||||||||| ||||| | ||| | || | || || Sbjct 5751790 CAGTTCCAGGAACTCAAAGACATCCGAGTGCCAGGGTTCCAAATAAATGGCAAAGGCACC 5751849 Query 110754 CTTACG---ACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCAT 110810 ||| | || |||| | ||||| ||||| |||||||||||| ||||| Sbjct 5751850 GGGACGCTTGCCGCCTCCCTGATCCACATAACGTGCCACATTATTGAAGACCCTCAGCAT 5751909 Query 110811 AGGAATAATTCCATCGGATTGACCATTTGTACCCCTAAT 110849 |||| | |||| ||| ||||||||| || | ||| Sbjct 5751910 GGGAACCAACCCATTGGAAGTACCATTTGTGCCGCAAAT 5751948 >seq1551 Length=3727775 Score = 122 bits (134), Expect = 1e-22 Identities = 187/264 (71%), Gaps = 2/264 (1%) Strand=Plus/Plus Query 167538 ATCCTTGCCACCCATGAGGCGTGTACCAAATTGACCACATGGCTCGAGAAGATTGATGTT 167597 ||| ||||| ||| | | ||| |||||||||||||| | |||||| || ||||| ||||| Sbjct 3065294 ATCTTTGCCTCCCGTCAAGCGGGTACCAAATTGACCGCGTGGCTCAAGCAGATTAATGTT 3065353 Query 167598 ATTCGACCCCGTATAATCGTTGGCCAACTTGACGATCGT-TTCAGCGAGGGAAACTTCGC 167656 |||| ||| | ||| | ||||| || ||||| || || || ||||| || || | Sbjct 3065354 GTTCGCACCCACAAAATTCTGGGCCAGATTTACGATTGTCATCTGC-AGGGATACCTCTC 3065412 Query 167657 CGTGGTGGTAAGCACTCTTTTCAGCCACATATGCTGCCAACTGTGCAACCTTCATCTCAT 167716 |||||||||| || | | || ||||| || | | | ||| || ||||||| |||| Sbjct 3065413 CGTGGTGGTAGGCCGACATCTCCGCCACTGATCCGGATAGCTGGGCCACCTTCACCTCAC 3065472 Query 167717 CTTTGAGATTCTTTTGGAAACATGAATACATAACCTTGCGTTGAGAAGGTTTGAGACCAT 167776 ||| |||| ||| |||||| | |||| ||||| || ||| || || | |||| Sbjct 3065473 GCTTGTCATTCCTTTTGAAACAAGTGAACATCACCTTCCGCTGACCCGGCTTCAAGCCAT 3065532 Query 167777 CTGCCACGTGAGCAATTGAGCGCT 167800 | ||| || ||| ||||||| Sbjct 3065533 CCACCAGACTAGGAATGGAGCGCT 3065556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588867547431800