Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18] 14,731 sequences; 166,592,095 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq1555 183 4e-41 seq1551 109 6e-19 >seq1555 Length=7220098 Score = 183 bits (202), Expect = 4e-41 Identities = 637/986 (65%), Gaps = 15/986 (2%) Strand=Plus/Plus Query 105935 TAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAG 105994 || |||||||| |||||||| || ||| ||||||| || |||| || || || || || Sbjct 5750858 TATATGTTCGTGGTGTAGGGCTCGAAGGATTCATTGTTGCCCATTATCTGAGCCGTAGAT 5750917 Query 105995 GCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTCC 106054 || || ||||| || || | | || ||| || | ||| | | ||| ||| ||| Sbjct 5750918 GCAGTGGGCATGGGAGCAACGAGCAGGGAGTTCCGGACACCGTGCTTCTTAATGGACTCC 5750977 Query 106055 TTGAGAACATCCCAGTCGTAGTTGAGCTTGGTTT-CACCTT--CCCACATATCAAATTGA 106111 || | | |||||| | || || ||| |||||| ||||||| || | || Sbjct 5750978 TTCAATTTCTGCCAGTCCCAC---AGGTTCGTTGGCACCTTGTCCCACATGTCGTACTGC 5751034 Query 106112 AGCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCC 106171 | | |||| | | || ||||| | || || || | ||||| || | ||| Sbjct 5751035 AAAATTCCTTTGCTCACCGGGCTGCCCTCGTAGGTTTCGTATGCACCTTCGGTCTGGGCC 5751094 Query 106172 AATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATC 106231 | ||| ||||| || |||| || | | || |||||||| || || | ||||| Sbjct 5751095 AGTTCGCAGCTGGCTTCCAAGGCGCCATAGTAAATGGTTTCGAATATCTGCTGATTCAAA 5751154 Query 106232 TCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCT 106291 |||||| || || | | | | || | ||| || |||| |||| || Sbjct 5751155 AGACCGGCTTCTTCGCTTTCGTACGGGAAACGCATGAGAATCAAGGCATCAGCGAATCCC 5751214 Query 106292 TGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGA 106351 |||| ||| | || | || | ||| | || ||| ||||| | || | | |||| Sbjct 5751215 TGAATACCAATGCCCACGGGACGGTGCCTCAAATTGGACTTCCTTGCCTCCGGCAGGGGA 5751274 Query 106352 TAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGA 106411 ||| | || | ||||| | |||||||||||||||||| ||||| |||| ||| | Sbjct 5751275 TAATAGTTGATATCAATTATCTTGTTTAGATTTTTGGTAACTATCTTGGTGACTTCCTTG 5751334 Query 106412 AGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGAT 106471 || || | | ||||| | || |||| |||| || | |||||||| || Sbjct 5751335 AGCTTCTTAAAATCATACGT---CTTCTCCGGCGTGACGAACATGTTGAGGGCGATGGAG 5751391 Query 106472 GCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAG 106531 ||||| ||||| || || |||||||| | || || | ||||| || |||||| Sbjct 5751392 GCCAAGTTGCAGACTGCAATCTCATCCGGTGAGGAATATTCAACGATTTCCGTGCACAAG 5751451 Query 106532 TTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTG 106591 ||| | ||| || || |||| ||||| ||||| ||||| ||||||| || |||||| Sbjct 5751452 TTGCTGCACTTGATGGTGCCCACATTCTGCTGGTTGCTCTTCCTGTTGCAAGCGTCCTTG 5751511 Query 106592 TAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACA--CAT 106649 |||||||||| || | || |||||| || | || | || || ||||| || Sbjct 5751512 AAGAGCATGTACGGATTTCCGGTCTCCACTTGCGCCTCAATGATGGCAAACCACAGGGAT 5751571 Query 106650 CGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTT 106709 | || || | ||||||||| ||||| |||||| || ||| || || Sbjct 5751572 TG--AGCCTTAACCGTTCGGTTGGCCCGACCCTCTTGCTCGTATTTCTCGTACAGCTTTT 5751629 Query 106710 CAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACC 106769 | || || || ||| | | ||| |||||| || ||||| || || | || |||| Sbjct 5751630 CGAATTCATCGCCCCACACTTCGTGGAGACCAGGACACTTGTGGGGGCACATGAGCGACC 5751689 Query 106770 ATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGA 106829 | | ||| ||||||| || |||||||| || || || |||||||||| |||| | Sbjct 5751690 AATCACCGTTGGCCTCAACGCGTTTCATGAAGAGATCGGGTATCCACAGGGCGTAAAACA 5751749 Query 106830 GATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGT-AACTCAAGGAACTCCATG 106888 |||| | ||| |||||| | || ||| || | | || |||||||| | | Sbjct 5751750 GATCGCGTGCGCGATTCTCTTCTTTGCCCGTGTT-CTTCTTCAGTTCCAGGAACTCAAAG 5751808 Query 106889 ATATCCGCGTGCCATGGCTCAAGATA 106914 | ||||| |||||| || || | ||| Sbjct 5751809 ACATCCGAGTGCCAGGGTTCCAAATA 5751834 >seq1551 Length=3727775 Score = 109 bits (120), Expect = 6e-19 Identities = 202/291 (69%), Gaps = 4/291 (1%) Strand=Plus/Plus Query 168444 GTGAAAATGTACCTCGT-CTGAGAAGCATCCTTACCACCCATGAGACGCGTACCAAATTG 168502 ||||||||||| | | ||| | | ||| || || ||| | | || ||||||||||| Sbjct 3065268 GTGAAAATGTAACGAGCGCTG-GCACAATCTTTGCCTCCCGTCAAGCGGGTACCAAATTG 3065326 Query 168503 ACCACACGGTTCAAGAAGGTTAATGTTGTTTGAACCCGTGTAGTCGTTTGCCAACTTAAC 168562 ||| | || ||||| || ||||||||||| | |||| | | | |||| || || Sbjct 3065327 ACCGCGTGGCTCAAGCAGATTAATGTTGTTCGCACCCACAAAATTCTGGGCCAGATTTAC 3065386 Query 168563 AATCGT-GTCCGCTAAGGATACTTCACCATGGTGGTACGCAGACTTGTCCGCGACATATG 168621 || || || || | |||||| || || |||||||| || ||| | ||||| || || Sbjct 3065387 GATTGTCATCTGC-AGGGATACCTCTCCGTGGTGGTAGGCCGACATCTCCGCCACTGATC 3065445 Query 168622 CCGCCAGTTGTGCCACCTTCATTTCATCCTTGAGATTCTTATGGAAGCAAGCATACATCA 168681 | | || || |||||||||| ||| |||| |||| | | ||| |||| |||||| Sbjct 3065446 CGGATAGCTGGGCCACCTTCACCTCACGCTTGTCATTCCTTTTGAAACAAGTGAACATCA 3065505 Query 168682 CTTTCCTCTGTGAAGGCTTGAGACCATCCGCCATATGGGCAATAGAGCGCT 168732 | |||| ||| ||||| | |||||| ||| | | ||| ||||||| Sbjct 3065506 CCTTCCGCTGACCCGGCTTCAAGCCATCCACCAGACTAGGAATGGAGCGCT 3065556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589872162410440