Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18]
14,731 sequences; 166,592,095 total letters
Query= NC_014789.1
Length=184409
Score E
Sequences producing significant alignments: (Bits) Value
seq1555 183 4e-41
seq1551 109 6e-19
>seq1555
Length=7220098
Score = 183 bits (202), Expect = 4e-41
Identities = 637/986 (65%), Gaps = 15/986 (2%)
Strand=Plus/Plus
Query 105935 TAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAG 105994
|| |||||||| |||||||| || ||| ||||||| || |||| || || || || ||
Sbjct 5750858 TATATGTTCGTGGTGTAGGGCTCGAAGGATTCATTGTTGCCCATTATCTGAGCCGTAGAT 5750917
Query 105995 GCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTCC 106054
|| || ||||| || || | | || ||| || | ||| | | ||| ||| |||
Sbjct 5750918 GCAGTGGGCATGGGAGCAACGAGCAGGGAGTTCCGGACACCGTGCTTCTTAATGGACTCC 5750977
Query 106055 TTGAGAACATCCCAGTCGTAGTTGAGCTTGGTTT-CACCTT--CCCACATATCAAATTGA 106111
|| | | |||||| | || || ||| |||||| ||||||| || | ||
Sbjct 5750978 TTCAATTTCTGCCAGTCCCAC---AGGTTCGTTGGCACCTTGTCCCACATGTCGTACTGC 5751034
Query 106112 AGCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCC 106171
| | |||| | | || ||||| | || || || | ||||| || | |||
Sbjct 5751035 AAAATTCCTTTGCTCACCGGGCTGCCCTCGTAGGTTTCGTATGCACCTTCGGTCTGGGCC 5751094
Query 106172 AATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATC 106231
| ||| ||||| || |||| || | | || |||||||| || || | |||||
Sbjct 5751095 AGTTCGCAGCTGGCTTCCAAGGCGCCATAGTAAATGGTTTCGAATATCTGCTGATTCAAA 5751154
Query 106232 TCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCT 106291
|||||| || || | | | | || | ||| || |||| |||| ||
Sbjct 5751155 AGACCGGCTTCTTCGCTTTCGTACGGGAAACGCATGAGAATCAAGGCATCAGCGAATCCC 5751214
Query 106292 TGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGA 106351
|||| ||| | || | || | ||| | || ||| ||||| | || | | ||||
Sbjct 5751215 TGAATACCAATGCCCACGGGACGGTGCCTCAAATTGGACTTCCTTGCCTCCGGCAGGGGA 5751274
Query 106352 TAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGA 106411
||| | || | ||||| | |||||||||||||||||| ||||| |||| ||| |
Sbjct 5751275 TAATAGTTGATATCAATTATCTTGTTTAGATTTTTGGTAACTATCTTGGTGACTTCCTTG 5751334
Query 106412 AGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGAT 106471
|| || | | ||||| | || |||| |||| || | |||||||| ||
Sbjct 5751335 AGCTTCTTAAAATCATACGT---CTTCTCCGGCGTGACGAACATGTTGAGGGCGATGGAG 5751391
Query 106472 GCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAG 106531
||||| ||||| || || |||||||| | || || | ||||| || ||||||
Sbjct 5751392 GCCAAGTTGCAGACTGCAATCTCATCCGGTGAGGAATATTCAACGATTTCCGTGCACAAG 5751451
Query 106532 TTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTG 106591
||| | ||| || || |||| ||||| ||||| ||||| ||||||| || ||||||
Sbjct 5751452 TTGCTGCACTTGATGGTGCCCACATTCTGCTGGTTGCTCTTCCTGTTGCAAGCGTCCTTG 5751511
Query 106592 TAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACA--CAT 106649
|||||||||| || | || |||||| || | || | || || ||||| ||
Sbjct 5751512 AAGAGCATGTACGGATTTCCGGTCTCCACTTGCGCCTCAATGATGGCAAACCACAGGGAT 5751571
Query 106650 CGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTT 106709
| || || | ||||||||| ||||| |||||| || ||| || ||
Sbjct 5751572 TG--AGCCTTAACCGTTCGGTTGGCCCGACCCTCTTGCTCGTATTTCTCGTACAGCTTTT 5751629
Query 106710 CAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACC 106769
| || || || ||| | | ||| |||||| || ||||| || || | || ||||
Sbjct 5751630 CGAATTCATCGCCCCACACTTCGTGGAGACCAGGACACTTGTGGGGGCACATGAGCGACC 5751689
Query 106770 ATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGA 106829
| | ||| ||||||| || |||||||| || || || |||||||||| |||| |
Sbjct 5751690 AATCACCGTTGGCCTCAACGCGTTTCATGAAGAGATCGGGTATCCACAGGGCGTAAAACA 5751749
Query 106830 GATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGT-AACTCAAGGAACTCCATG 106888
|||| | ||| |||||| | || ||| || | | || |||||||| | |
Sbjct 5751750 GATCGCGTGCGCGATTCTCTTCTTTGCCCGTGTT-CTTCTTCAGTTCCAGGAACTCAAAG 5751808
Query 106889 ATATCCGCGTGCCATGGCTCAAGATA 106914
| ||||| |||||| || || | |||
Sbjct 5751809 ACATCCGAGTGCCAGGGTTCCAAATA 5751834
>seq1551
Length=3727775
Score = 109 bits (120), Expect = 6e-19
Identities = 202/291 (69%), Gaps = 4/291 (1%)
Strand=Plus/Plus
Query 168444 GTGAAAATGTACCTCGT-CTGAGAAGCATCCTTACCACCCATGAGACGCGTACCAAATTG 168502
||||||||||| | | ||| | | ||| || || ||| | | || |||||||||||
Sbjct 3065268 GTGAAAATGTAACGAGCGCTG-GCACAATCTTTGCCTCCCGTCAAGCGGGTACCAAATTG 3065326
Query 168503 ACCACACGGTTCAAGAAGGTTAATGTTGTTTGAACCCGTGTAGTCGTTTGCCAACTTAAC 168562
||| | || ||||| || ||||||||||| | |||| | | | |||| || ||
Sbjct 3065327 ACCGCGTGGCTCAAGCAGATTAATGTTGTTCGCACCCACAAAATTCTGGGCCAGATTTAC 3065386
Query 168563 AATCGT-GTCCGCTAAGGATACTTCACCATGGTGGTACGCAGACTTGTCCGCGACATATG 168621
|| || || || | |||||| || || |||||||| || ||| | ||||| || ||
Sbjct 3065387 GATTGTCATCTGC-AGGGATACCTCTCCGTGGTGGTAGGCCGACATCTCCGCCACTGATC 3065445
Query 168622 CCGCCAGTTGTGCCACCTTCATTTCATCCTTGAGATTCTTATGGAAGCAAGCATACATCA 168681
| | || || |||||||||| ||| |||| |||| | | ||| |||| ||||||
Sbjct 3065446 CGGATAGCTGGGCCACCTTCACCTCACGCTTGTCATTCCTTTTGAAACAAGTGAACATCA 3065505
Query 168682 CTTTCCTCTGTGAAGGCTTGAGACCATCCGCCATATGGGCAATAGAGCGCT 168732
| |||| ||| ||||| | |||||| ||| | | ||| |||||||
Sbjct 3065506 CCTTCCGCTGACCCGGCTTCAAGCCATCCACCAGACTAGGAATGGAGCGCT 3065556
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 589872162410440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |