Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18]
14,731 sequences; 166,592,095 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq1557 116 4e-21
>seq1557
Length=14215200
Score = 116 bits (128), Expect = 4e-21
Identities = 532/836 (64%), Gaps = 6/836 (1%)
Strand=Plus/Plus
Query 18661 ACTCCCATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAAT 18720
|||||||| || || || || || | || || || || || || ||||| || |
Sbjct 5421653 ACTCCCATGCGCTGGTACTCCGCCACCTTCTTCTCGAAAAAGTTGGTCTTTCCGTCCAGC 5421712
Query 18721 GATATACAT-TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAA 18779
||||| ||| ||||| || | |||||| ||||| || || || ||| | || ||
Sbjct 5421713 GATAT-CATCTCCATGAAGTTAAATGGGTTTTTGGTGTTGTAGATCTTTCCAACGCCCAA 5421771
Query 18780 TTCTAATAGTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCAT 18839
|| | || | | |||||||| || | ||| || | ||||| || ||||||||
Sbjct 5421772 CTCCACGAGCAAACGGTCCGCTACGAACTCAATGTACTGGGACATCAGGTCGCAATTCAT 5421831
Query 18840 TCCTATTAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTC 18899
|| || || || || || || ||||| || || || || || ||||| || || ||
Sbjct 5421832 GCCGATCAAATTGACGGGCAGGGCATCGGTGAGGAACTCCTGCTCTATGGCCACCGCGTC 5421891
Query 18900 TGATATAATAGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAA 18959
|| || | | | || || || | | | || || | |||||||
Sbjct 5421892 GCGGATGATCTCGATGATGCGCTCGCGCTTGGGTCGCTGCACCAGGTGCTGGAACATCAG 5421951
Query 18960 ACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAA 19019
||||| || || || | |||||||| | | |||| || || || || || ||
Sbjct 5421952 CACGGCAAAGTCGCAGTGCAAGCCCTCGTCGCGAGAGATCAGCTCGTTGGAGAAGGTCAA 5422011
Query 19020 ACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAA 19079
||||||||||| || | || || | |||||| || || || || || |||||
Sbjct 5422012 TCCAGGCATCAGACCGCGCTTCTTAAGCCAGAAAATGGAGGCGAAGCTGCCGCTGAAGAA 5422071
Query 19080 TATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATG 19139
|| || || || || ||||| || | | | || || || | || | | |||
Sbjct 5422072 AATGCCCTCCACGGCGGCAAAGGCGATGATGCGCTCCCCGAAATTGGC-CGACTTGGATG 5422130
Query 19140 A-ATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAAT 19198
| ||||| ||| ||||| || ||||| || ||| ||||| || || |||| |
Sbjct 5422131 AGATCCAGGACAGGGCCCAGTCTGCCTTGCGCTTCACAGCCGGCATCGTTTCGATAGCGT 5422190
Query 19199 TAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACA 19258
| || || ||| |||| | || ||| | || | || ||||| | ||||||||
Sbjct 5422191 TGAACAGGTACTCTCGCTGGTGTGGATCCCGGATGTAAGTGTCGATCAAAACACTGTACA 5422250
Query 19259 TTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTA 19318
| || || || | || || || || ||||| || ||||| || |||| ||| || || |
Sbjct 5422251 TCTCCGAGTGCACGTTCTCCATGGCGATCTGGAAGCCGTAGAAGCATCGTGCCTCCGTGA 5422310
Query 19319 TCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTG 19378
|||| || || || || | || |||| || || || || || |||||| || |
Sbjct 5422311 TCTGCACCTCCTGACTGAAGCGCTCCACCAGGTTCTCGTTTACGATGCCATCAGAGGCGG 5422370
Query 19379 CAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATG-TATTCCAA 19437
| || || || | || || || ||||| || || | || | | | |||
Sbjct 5422371 CGAAGAAGGCCAGCACGTGCGAGATGAAATGGCGCTCGTC-GTCCTTCAGGCGGTGCCAG 5422429
Query 19438 TCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGC 19493
||| ||| || || || ||||| || || || || ||||| ||||||||||| ||
Sbjct 5422430 TCAGTAAGGTCCTTGGACAAATCCACCTCCTCGACGGTCCAGAAAGAAGCCTCAGC 5422485
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562005294690840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |