Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18] 14,731 sequences; 166,592,095 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq1557 116 4e-21 >seq1557 Length=14215200 Score = 116 bits (128), Expect = 4e-21 Identities = 532/836 (64%), Gaps = 6/836 (1%) Strand=Plus/Plus Query 18661 ACTCCCATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAAT 18720 |||||||| || || || || || | || || || || || || ||||| || | Sbjct 5421653 ACTCCCATGCGCTGGTACTCCGCCACCTTCTTCTCGAAAAAGTTGGTCTTTCCGTCCAGC 5421712 Query 18721 GATATACAT-TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAA 18779 ||||| ||| ||||| || | |||||| ||||| || || || ||| | || || Sbjct 5421713 GATAT-CATCTCCATGAAGTTAAATGGGTTTTTGGTGTTGTAGATCTTTCCAACGCCCAA 5421771 Query 18780 TTCTAATAGTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCAT 18839 || | || | | |||||||| || | ||| || | ||||| || |||||||| Sbjct 5421772 CTCCACGAGCAAACGGTCCGCTACGAACTCAATGTACTGGGACATCAGGTCGCAATTCAT 5421831 Query 18840 TCCTATTAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTC 18899 || || || || || || || ||||| || || || || || ||||| || || || Sbjct 5421832 GCCGATCAAATTGACGGGCAGGGCATCGGTGAGGAACTCCTGCTCTATGGCCACCGCGTC 5421891 Query 18900 TGATATAATAGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAA 18959 || || | | | || || || | | | || || | ||||||| Sbjct 5421892 GCGGATGATCTCGATGATGCGCTCGCGCTTGGGTCGCTGCACCAGGTGCTGGAACATCAG 5421951 Query 18960 ACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAA 19019 ||||| || || || | |||||||| | | |||| || || || || || || Sbjct 5421952 CACGGCAAAGTCGCAGTGCAAGCCCTCGTCGCGAGAGATCAGCTCGTTGGAGAAGGTCAA 5422011 Query 19020 ACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAA 19079 ||||||||||| || | || || | |||||| || || || || || ||||| Sbjct 5422012 TCCAGGCATCAGACCGCGCTTCTTAAGCCAGAAAATGGAGGCGAAGCTGCCGCTGAAGAA 5422071 Query 19080 TATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATG 19139 || || || || || ||||| || | | | || || || | || | | ||| Sbjct 5422072 AATGCCCTCCACGGCGGCAAAGGCGATGATGCGCTCCCCGAAATTGGC-CGACTTGGATG 5422130 Query 19140 A-ATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAAT 19198 | ||||| ||| ||||| || ||||| || ||| ||||| || || |||| | Sbjct 5422131 AGATCCAGGACAGGGCCCAGTCTGCCTTGCGCTTCACAGCCGGCATCGTTTCGATAGCGT 5422190 Query 19199 TAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACA 19258 | || || ||| |||| | || ||| | || | || ||||| | |||||||| Sbjct 5422191 TGAACAGGTACTCTCGCTGGTGTGGATCCCGGATGTAAGTGTCGATCAAAACACTGTACA 5422250 Query 19259 TTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTA 19318 | || || || | || || || || ||||| || ||||| || |||| ||| || || | Sbjct 5422251 TCTCCGAGTGCACGTTCTCCATGGCGATCTGGAAGCCGTAGAAGCATCGTGCCTCCGTGA 5422310 Query 19319 TCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTG 19378 |||| || || || || | || |||| || || || || || |||||| || | Sbjct 5422311 TCTGCACCTCCTGACTGAAGCGCTCCACCAGGTTCTCGTTTACGATGCCATCAGAGGCGG 5422370 Query 19379 CAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATG-TATTCCAA 19437 | || || || | || || || ||||| || || | || | | | ||| Sbjct 5422371 CGAAGAAGGCCAGCACGTGCGAGATGAAATGGCGCTCGTC-GTCCTTCAGGCGGTGCCAG 5422429 Query 19438 TCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGC 19493 ||| ||| || || || ||||| || || || || ||||| ||||||||||| || Sbjct 5422430 TCAGTAAGGTCCTTGGACAAATCCACCTCCTCGACGGTCCAGAAAGAAGCCTCAGC 5422485 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562005294690840