Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18] 14,731 sequences; 166,592,095 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq1553 277 1e-69 >seq1553 Length=5866729 Score = 277 bits (306), Expect = 1e-69 Identities = 464/669 (69%), Gaps = 8/669 (1%) Strand=Plus/Plus Query 29725 AAGTCGTCCAGGTTCTCCACCCTCCTGTTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCC 29784 ||||| || | || || |||| | || || |||| |||||||||||| || Sbjct 1124547 AAGTCCTCGATGTCCTGCACCTGACGTTTAATGATCAGCTTGGGAAAGGGTCGCGGTGTG 1124606 Query 29785 CTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGG 29844 | || || || ||||||||| || ||||| | |||||||||||| | || |||| | Sbjct 1124607 CGCTGCAGTTGCTCCTTCAGCGGCTCTACGTGGTTCAGGTAGACGTGTGTATCGCCCATG 1124666 Query 29845 GTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGA 29904 ||||| ||||| || ||||| | || || || || || || ||||||| ||||| || Sbjct 1124667 GTGTGAACAAAGTCGCCCGGCTTCAGACCCGTCACATGGGCAATCATGTGGGTGAGCAGG 1124726 Query 29905 GAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGC 29964 | |||| |||||||||||||||||| || || |||||||| | |||||||| ||| Sbjct 1124727 GCGTAGGAGGCGATGTTAAAGGGTACGCCCAGGCCCATGTCGGCGCTTCTCTGGTACAGC 1124786 Query 29965 TGACACGAGAGCTCTCCG------TCGCTCACGTAAAACTGACACATGGTGTGGCACGGA 30018 || ||||| ||||| ||| ||| ||||||||||| || | ||||||||| Sbjct 1124787 TGGCACGACAGCTCACCGCGCTTCTCGGAGACGTAAAACTGCGCCAAGCAGTGGCACGGC 1124846 Query 30019 GGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCT 30078 || || ||||| | ||| || ||||| || ||| ||||||||| | |||| Sbjct 1124847 GGCAGGGCCATCTTTGGGATGTCCAGCGGATTCCAAGCCGACATGATGATGCGTCGGTCT 1124906 Query 30079 TCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAG 30138 || || ||||||||| ||| | | | ||||||| || | ||| | || | Sbjct 1124907 GAGGGCTTATTCCTGATGGTGTCGATCACTTGGCGCAGCTGGTCGATGCCCTTGCCGCTG 1124966 Query 30139 TAG-TCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACAC 30197 ||| | | | || || | ||||| || |||||||||||||||||||| |||||||| Sbjct 1124967 TAGTTATCGTCGCAGGTGC-CGTACTGCGCCCCGAAATGCCTCCACTGGAAGCCGTACAC 1125025 Query 30198 CGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGA 30257 ||| ||||| || || | | | | | ||| ||| ||||||||| || |||||||| Sbjct 1125026 CGGGCCCAGATCGCCAACGACTCGGCCCGTGAACCCCATCTTGTCCAGGAATTCTCTGGA 1125085 Query 30258 ACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 30317 | ||| | |||||||| | || |||| | ||| ||||| || || || Sbjct 1125086 GCTGTTCCCATCCCAGATGTGCACATTCTTCGCCTGCAGCAGTTTGGCGTCCGTCTTGCC 1125145 Query 30318 TCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAG 30377 | |||||||||||||||||||| | || || | ||||| | ||| || || || Sbjct 1125146 TGCCACGAACCACAGCAGCTCCTCTGCCACCGCGCGGAAGAAGACACGCTTCGTGGTCAG 1125205 Query 30378 GAGGGGAAA 30386 ||||||||| Sbjct 1125206 GAGGGGAAA 1125214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408544239222263