Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18]
14,731 sequences; 166,592,095 total letters
Query= NC_017940.1
Length=127732
Score E
Sequences producing significant alignments: (Bits) Value
seq1553 277 1e-69
>seq1553
Length=5866729
Score = 277 bits (306), Expect = 1e-69
Identities = 464/669 (69%), Gaps = 8/669 (1%)
Strand=Plus/Plus
Query 29725 AAGTCGTCCAGGTTCTCCACCCTCCTGTTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCC 29784
||||| || | || || |||| | || || |||| |||||||||||| ||
Sbjct 1124547 AAGTCCTCGATGTCCTGCACCTGACGTTTAATGATCAGCTTGGGAAAGGGTCGCGGTGTG 1124606
Query 29785 CTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGG 29844
| || || || ||||||||| || ||||| | |||||||||||| | || |||| |
Sbjct 1124607 CGCTGCAGTTGCTCCTTCAGCGGCTCTACGTGGTTCAGGTAGACGTGTGTATCGCCCATG 1124666
Query 29845 GTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGA 29904
||||| ||||| || ||||| | || || || || || || ||||||| ||||| ||
Sbjct 1124667 GTGTGAACAAAGTCGCCCGGCTTCAGACCCGTCACATGGGCAATCATGTGGGTGAGCAGG 1124726
Query 29905 GAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGC 29964
| |||| |||||||||||||||||| || || |||||||| | |||||||| |||
Sbjct 1124727 GCGTAGGAGGCGATGTTAAAGGGTACGCCCAGGCCCATGTCGGCGCTTCTCTGGTACAGC 1124786
Query 29965 TGACACGAGAGCTCTCCG------TCGCTCACGTAAAACTGACACATGGTGTGGCACGGA 30018
|| ||||| ||||| ||| ||| ||||||||||| || | |||||||||
Sbjct 1124787 TGGCACGACAGCTCACCGCGCTTCTCGGAGACGTAAAACTGCGCCAAGCAGTGGCACGGC 1124846
Query 30019 GGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCT 30078
|| || ||||| | ||| || ||||| || ||| ||||||||| | ||||
Sbjct 1124847 GGCAGGGCCATCTTTGGGATGTCCAGCGGATTCCAAGCCGACATGATGATGCGTCGGTCT 1124906
Query 30079 TCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAG 30138
|| || ||||||||| ||| | | | ||||||| || | ||| | || |
Sbjct 1124907 GAGGGCTTATTCCTGATGGTGTCGATCACTTGGCGCAGCTGGTCGATGCCCTTGCCGCTG 1124966
Query 30139 TAG-TCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACAC 30197
||| | | | || || | ||||| || |||||||||||||||||||| ||||||||
Sbjct 1124967 TAGTTATCGTCGCAGGTGC-CGTACTGCGCCCCGAAATGCCTCCACTGGAAGCCGTACAC 1125025
Query 30198 CGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGA 30257
||| ||||| || || | | | | | ||| ||| ||||||||| || ||||||||
Sbjct 1125026 CGGGCCCAGATCGCCAACGACTCGGCCCGTGAACCCCATCTTGTCCAGGAATTCTCTGGA 1125085
Query 30258 ACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 30317
| ||| | |||||||| | || |||| | ||| ||||| || || ||
Sbjct 1125086 GCTGTTCCCATCCCAGATGTGCACATTCTTCGCCTGCAGCAGTTTGGCGTCCGTCTTGCC 1125145
Query 30318 TCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAG 30377
| |||||||||||||||||||| | || || | ||||| | ||| || || ||
Sbjct 1125146 TGCCACGAACCACAGCAGCTCCTCTGCCACCGCGCGGAAGAAGACACGCTTCGTGGTCAG 1125205
Query 30378 GAGGGGAAA 30386
|||||||||
Sbjct 1125206 GAGGGGAAA 1125214
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 408544239222263
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |