Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18] 14,731 sequences; 166,592,095 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq1556 111 1e-19 seq1557 95.1 1e-14 seq1554 93.3 3e-14 >seq1556 Length=7591821 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| | ||| ||||| ||||| || || || || || |||||||||| | || | | Sbjct 3893216 ACGGAGAACCAAATGGAGGGTTGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCC 3893275 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 || ||||||||||| || || || |||| |||||| ||||| || ||||| || || || Sbjct 3893276 GTCTTCCAATTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGGGGAATTCCCTCCTT 3893335 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 ||||| ||||| || ||| | || | ||||| || | || || || | ||||| Sbjct 3893336 GTCTTGGATTTTAGCCTTCACATTCTCAATGGTGTCCGATGGCTCAACCTCCAAAGTGAT 3893395 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || ||||| || | || || || || |||||||| Sbjct 3893396 GGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 3893431 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| | ||| ||||| ||||| || || || || || |||||||||| | || | | Sbjct 3893900 ACGGAGAACCAAATGGAGGGTTGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCC 3893959 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 || ||||||||||| || || || |||| |||||| ||||| || ||||| || || || Sbjct 3893960 GTCTTCCAATTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGGGGAATTCCCTCCTT 3894019 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 ||||| ||||| || ||| | || | ||||| || | || || || | ||||| Sbjct 3894020 GTCTTGGATTTTAGCCTTCACATTCTCAATGGTGTCCGATGGCTCAACCTCCAAAGTGAT 3894079 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || ||||| || | || || || || |||||||| Sbjct 3894080 GGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 3894115 >seq1557 Length=14215200 Score = 95.1 bits (104), Expect = 1e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 13667 CAACCTTCAAAATTCATGTGTCGTATTTTACCATAGATTGGTCGCTCCATCCAGGCACGA 13726 || |||| | | ||||||| || | ||||| ||| | |||||| ||||| | Sbjct 1364758 CATCCTTGATAGTTCATGTACCGAACCTTACCGAAGACAGCCCGCTCCTTCCAGCCCATG 1364699 Query 13727 TCGTGAGTTCCGCATATTGACCACATGCAACCGGCATAACCGTTGGGATCGCGTCCATCC 13786 || || |||| || ||||||||||||||| |||| |||||||| |||||||||||| Sbjct 1364698 TCATGGACGCCGCCAATGGACCACATGCAACCGACATAGCCGTTGGGGTCGCGTCCATCC 1364639 Query 13787 AAACTGTATTTGTCGTT 13803 | |||||| |||||||| Sbjct 1364638 AGACTGTACTTGTCGTT 1364622 >seq1554 Length=6179234 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || ||||||||||| || || || || || ||||| |||| | ||| | | || ||| Sbjct 592527 ACCAAATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCCTCC 592468 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 || ||||| || || || ||||||||||| ||||| || || || || || || || || Sbjct 592467 AACTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGG 592408 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || || || | || | || || || | || || || | ||||| || ||| Sbjct 592407 ATCTTGGCCTTGACGTTCTCGATGGTATCGGATGGCTCAACCTCCAAAGTGATGGTCTTG 592348 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| | ||| || || || || ||||| Sbjct 592347 CCGGTCAGAGTCTTAACGAAAATTTGCAT 592319 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || |||||||| || || || || || ||||| |||| | ||| | | || ||| Sbjct 592755 ACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCCTCC 592696 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | ||||| || || || ||||||||||| ||||| || || || ||||| || || || Sbjct 592695 AGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCTTCCTTGTCCTGG 592636 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || || || | || | || || || | || ||||| | |||| || ||| Sbjct 592635 ATCTTGGCCTTGACGTTCTCAATGGTATCGGATGGCTCAACTTCCAAGGTGATGGTCTTG 592576 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || || | ||| || || || ||||||||| Sbjct 592575 CCAGTCAGAGTCTTCACGAAGATCTGCATG 592546 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || |||||||| || || || || || ||||| |||| | ||| | | || ||| Sbjct 593211 ACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCCTCC 593152 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | ||||| || || || ||||||||||| ||||| || || || || || || || || Sbjct 593151 AGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGG 593092 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || || ||| | || | || || || | || ||||| | |||| || ||| Sbjct 593091 ATCTTGGCCTTGACATTCTCAATGGTATCGGATGGCTCAACTTCCAAGGTGATGGTCTTG 593032 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || || | ||| || || || ||||||||| Sbjct 593031 CCAGTCAGAGTCTTCACGAAGATCTGCATG 593002 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || |||||||| || || || || || ||||| |||| | ||| | | || ||| Sbjct 592983 ACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCCTCC 592924 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | ||||| || || || ||||||||||| ||||| || || || || || || || || Sbjct 592923 AGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGG 592864 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || || || | || | || || || | || ||||| | |||| || ||| Sbjct 592863 ATCTTGGCCTTGACGTTCTCAATGGTATCGGATGGCTCAACTTCCAAGGTGATGGTCTTG 592804 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || || | ||| || || || ||||||||| Sbjct 592803 CCAGTCAGAGTCTTCACGAAGATCTGCATG 592774 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396207254528967