Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18]
14,731 sequences; 166,592,095 total letters
Query= NC_018504.1
Length=123876
Score E
Sequences producing significant alignments: (Bits) Value
seq1556 111 1e-19
seq1557 95.1 1e-14
seq1554 93.3 3e-14
>seq1556
Length=7591821
Score = 111 bits (122), Expect = 1e-19
Identities = 154/216 (71%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313
||| | ||| ||||| ||||| || || || || || |||||||||| | || | |
Sbjct 3893216 ACGGAGAACCAAATGGAGGGTTGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCC 3893275
Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373
|| ||||||||||| || || || |||| |||||| ||||| || ||||| || || ||
Sbjct 3893276 GTCTTCCAATTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGGGGAATTCCCTCCTT 3893335
Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433
||||| ||||| || ||| | || | ||||| || | || || || | |||||
Sbjct 3893336 GTCTTGGATTTTAGCCTTCACATTCTCAATGGTGTCCGATGGCTCAACCTCCAAAGTGAT 3893395
Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469
|| ||||| || | || || || || ||||||||
Sbjct 3893396 GGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 3893431
Score = 111 bits (122), Expect = 1e-19
Identities = 154/216 (71%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313
||| | ||| ||||| ||||| || || || || || |||||||||| | || | |
Sbjct 3893900 ACGGAGAACCAAATGGAGGGTTGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCC 3893959
Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373
|| ||||||||||| || || || |||| |||||| ||||| || ||||| || || ||
Sbjct 3893960 GTCTTCCAATTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGGGGAATTCCCTCCTT 3894019
Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433
||||| ||||| || ||| | || | ||||| || | || || || | |||||
Sbjct 3894020 GTCTTGGATTTTAGCCTTCACATTCTCAATGGTGTCCGATGGCTCAACCTCCAAAGTGAT 3894079
Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469
|| ||||| || | || || || || ||||||||
Sbjct 3894080 GGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 3894115
>seq1557
Length=14215200
Score = 95.1 bits (104), Expect = 1e-14
Identities = 103/137 (75%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 13667 CAACCTTCAAAATTCATGTGTCGTATTTTACCATAGATTGGTCGCTCCATCCAGGCACGA 13726
|| |||| | | ||||||| || | ||||| ||| | |||||| ||||| |
Sbjct 1364758 CATCCTTGATAGTTCATGTACCGAACCTTACCGAAGACAGCCCGCTCCTTCCAGCCCATG 1364699
Query 13727 TCGTGAGTTCCGCATATTGACCACATGCAACCGGCATAACCGTTGGGATCGCGTCCATCC 13786
|| || |||| || ||||||||||||||| |||| |||||||| ||||||||||||
Sbjct 1364698 TCATGGACGCCGCCAATGGACCACATGCAACCGACATAGCCGTTGGGGTCGCGTCCATCC 1364639
Query 13787 AAACTGTATTTGTCGTT 13803
| |||||| ||||||||
Sbjct 1364638 AGACTGTACTTGTCGTT 1364622
>seq1554
Length=6179234
Score = 93.3 bits (102), Expect = 3e-14
Identities = 146/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320
|| ||||||||||| || || || || || ||||| |||| | ||| | | || |||
Sbjct 592527 ACCAAATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCCTCC 592468
Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380
|| ||||| || || || ||||||||||| ||||| || || || || || || || ||
Sbjct 592467 AACTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGG 592408
Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440
|| || || || | || | || || || | || || || | ||||| || |||
Sbjct 592407 ATCTTGGCCTTGACGTTCTCGATGGTATCGGATGGCTCAACCTCCAAAGTGATGGTCTTG 592348
Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469
||||| | ||| || || || || |||||
Sbjct 592347 CCGGTCAGAGTCTTAACGAAAATTTGCAT 592319
Score = 91.5 bits (100), Expect = 1e-13
Identities = 146/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320
|| || |||||||| || || || || || ||||| |||| | ||| | | || |||
Sbjct 592755 ACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCCTCC 592696
Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380
| ||||| || || || ||||||||||| ||||| || || || ||||| || || ||
Sbjct 592695 AGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCTTCCTTGTCCTGG 592636
Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440
|| || || || | || | || || || | || ||||| | |||| || |||
Sbjct 592635 ATCTTGGCCTTGACGTTCTCAATGGTATCGGATGGCTCAACTTCCAAGGTGATGGTCTTG 592576
Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCATG 101470
|| || | ||| || || || |||||||||
Sbjct 592575 CCAGTCAGAGTCTTCACGAAGATCTGCATG 592546
Score = 91.5 bits (100), Expect = 1e-13
Identities = 146/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320
|| || |||||||| || || || || || ||||| |||| | ||| | | || |||
Sbjct 593211 ACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCCTCC 593152
Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380
| ||||| || || || ||||||||||| ||||| || || || || || || || ||
Sbjct 593151 AGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGG 593092
Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440
|| || || ||| | || | || || || | || ||||| | |||| || |||
Sbjct 593091 ATCTTGGCCTTGACATTCTCAATGGTATCGGATGGCTCAACTTCCAAGGTGATGGTCTTG 593032
Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCATG 101470
|| || | ||| || || || |||||||||
Sbjct 593031 CCAGTCAGAGTCTTCACGAAGATCTGCATG 593002
Score = 86.0 bits (94), Expect = 5e-12
Identities = 145/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320
|| || |||||||| || || || || || ||||| |||| | ||| | | || |||
Sbjct 592983 ACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCCTCC 592924
Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380
| ||||| || || || ||||||||||| ||||| || || || || || || || ||
Sbjct 592923 AGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGG 592864
Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440
|| || || || | || | || || || | || ||||| | |||| || |||
Sbjct 592863 ATCTTGGCCTTGACGTTCTCAATGGTATCGGATGGCTCAACTTCCAAGGTGATGGTCTTG 592804
Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCATG 101470
|| || | ||| || || || |||||||||
Sbjct 592803 CCAGTCAGAGTCTTCACGAAGATCTGCATG 592774
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 396207254528967
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |