Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18] 14,731 sequences; 166,592,095 total letters Query= NC_018874.1 Length=211518 Score E Sequences producing significant alignments: (Bits) Value seq1549 123 3e-23 seq533 123 3e-23 >seq1549 Length=3197100 Score = 123 bits (136), Expect = 3e-23 Identities = 192/271 (71%), Gaps = 5/271 (2%) Strand=Plus/Minus Query 197022 CAGATCCTCGTCGCTAAAGCCCGTACCGATCTTACAAATGGATTCGTACATCTGGTTGTC 197081 ||| ||||| || | || ||||| || ||||| || ||| | ||| || ||| || Sbjct 3071113 CAGGTCCTCATCAGTGAAACCCGTTCCAATCTTGCATATGCTCTGATACTCCTCGTTCTC 3071054 Query 197082 GGGATTGTAACAGGCGAGTAAGAAAGCGCCGTAGGTTCCCGTTCTCTTTCCCACCCCGTT 197141 || | || ||||| || || || | ||||||||||| |||| | ||| || || Sbjct 3071053 GGTGTCATAGCAGGCAAGCAAAAATCCTCCGTAGGTTCCAGTTCGCCGGCCCTTGCCTTT 3070994 Query 197142 GAAGCCTCCGATAACCACCAGATCCAGAGTGTCGCACACCCCTTCCAT--GTAATCTTTC 197199 | |||| || || ||||||| ||| || | ||||| || || || ||| || ||| Sbjct 3070993 GTAGCCGCCAATGACCACCAAATCGAGTGAGTCGCCTACA--TTGGATAGGTAGTCCTTC 3070936 Query 197200 TTCAGTTTGAGCCAGCTTCTAGATCTCTTGGCAATCTCGTAGGTTGCGTTTACGTCCAGG 197259 |||| ||| |||||| | | ||||||||||||||||| ||||| || | | |||| Sbjct 3070935 TTCAATTTCAGCCAGTTGCGGGATCTCTTGGCAATCTCATAGGTGGCCTCCTCATCCAAA 3070876 Query 197260 GTCTTGATCATCAATCCCTCGCAATCTTCCT 197290 || |||| ||| | |||||||||| ||||| Sbjct 3070875 GTTTTGACCATGAGGCCCTCGCAAT-TTCCT 3070846 >seq533 Length=8139 Score = 123 bits (136), Expect = 3e-23 Identities = 192/271 (71%), Gaps = 5/271 (2%) Strand=Plus/Minus Query 197022 CAGATCCTCGTCGCTAAAGCCCGTACCGATCTTACAAATGGATTCGTACATCTGGTTGTC 197081 ||| ||||| || | || ||||| || ||||| || ||| | ||| || ||| || Sbjct 7333 CAGGTCCTCATCAGTGAAACCCGTTCCAATCTTGCATATGCTCTGATACTCCTCGTTCTC 7274 Query 197082 GGGATTGTAACAGGCGAGTAAGAAAGCGCCGTAGGTTCCCGTTCTCTTTCCCACCCCGTT 197141 || | || ||||| || || || | ||||||||||| |||| | ||| || || Sbjct 7273 GGTGTCATAGCAGGCAAGCAAAAATCCTCCGTAGGTTCCAGTTCGCCGGCCCTTGCCTTT 7214 Query 197142 GAAGCCTCCGATAACCACCAGATCCAGAGTGTCGCACACCCCTTCCAT--GTAATCTTTC 197199 | |||| || || ||||||| ||| || | ||||| || || || ||| || ||| Sbjct 7213 GTAGCCGCCAATGACCACCAAATCGAGTGAGTCGCCTACA--TTGGATAGGTAGTCCTTC 7156 Query 197200 TTCAGTTTGAGCCAGCTTCTAGATCTCTTGGCAATCTCGTAGGTTGCGTTTACGTCCAGG 197259 |||| ||| |||||| | | ||||||||||||||||| ||||| || | | |||| Sbjct 7155 TTCAATTTCAGCCAGTTGCGGGATCTCTTGGCAATCTCATAGGTGGCCTCCTCATCCAAA 7096 Query 197260 GTCTTGATCATCAATCCCTCGCAATCTTCCT 197290 || |||| ||| | |||||||||| ||||| Sbjct 7095 GTTTTGACCATGAGGCCCTCGCAAT-TTCCT 7066 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 676604988703280