Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18] 14,731 sequences; 166,592,095 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq1555 149 5e-31 seq1554 96.9 3e-15 seq1553 95.1 9e-15 seq1556 84.2 2e-11 >seq1555 Length=7220098 Score = 149 bits (164), Expect = 5e-31 Identities = 234/335 (70%), Gaps = 0/335 (0%) Strand=Plus/Minus Query 9058 ACCAGTGTGGGATAAAAGATTTGTTCACAAATTAATTGAGCAATCCTGTCCCCCTTATTC 9117 |||||| ||||| ||||| | || ||||| || || || || | ||| || | ||| Sbjct 6413263 ACCAGTTGCGGATAGAAGATGCGCTCGCAAATAAACTGGGCGATGCGGTCGCCATGCTTC 6413204 Query 9118 ACGACAAAGTCTGTGTCGGAATGATTGAACAGCACCACTCCCACGTTACCCCTGTAATCC 9177 || |||| || || || ||||||||||| || || || | || || | |||||| Sbjct 6413203 ACCTCAAAATCAACATCTGAGTGATTGAACAGGACGACGCCGAGATTGCCGCGATAATCC 6413144 Query 9178 TCATCGATCACACCAGCACCCACGTCGATGAAGTGCTTGACCGCTAGTCCAGAGCGGGGC 9237 || |||| |||||| || ||||| || ||||||| ||| || ||||| || || || || Sbjct 6413143 TCGTCGACCACACCGGCGCCCACATCAATGAAGTTCTTCACTGCTAGCCCGGATCGTGGG 6413084 Query 9238 GCGATTCGACCGTAGCATCCCACCGGTAATTGCACCCGCAAGTCGGTCATGACCAGCCCC 9297 || | || |||||| | ||| |||| | ||||| ||| |||||| |||| | || Sbjct 6413083 GCTACGCGTCCGTAGGAGCCCTCCGGAACCTGCACTTGCAGATCGGTCTTGACAATGGCC 6413024 Query 9298 TTGCCGTGTTTTGGAATCACGGTGTCGTAGCCGCTCTTGAGATCAAACCCAGCTGCCCTG 9357 || ||| || || | ||| ||||||| ||||| || |||| || || || || Sbjct 6413023 TTTCCGCGTGCCGGCACCACCAGGTCGTAGGCGCTCCGCAGGTCAACTCCCGCCGCTTTG 6412964 Query 9358 TCCGATCCCTTCGTGGGCGCAAAAGCGTTTTCGGT 9392 | |||||| || ||| | ||||| || ||||| Sbjct 6412963 GCGGATCCCCTCACCGGCTCCAAAGCATTCTCGGT 6412929 >seq1554 Length=6179234 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| |||||||| || || ||| || || || ||||| || || ||| | || Sbjct 592536 AGACGCAGGACCAAATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGT 592477 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| ||||||||||| ||||| || |||| ||||| ||||| | ||| | |||||| Sbjct 592476 CCGTCCTCCAACTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCC 592417 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || || | | | || || | ||| ||||||| || Sbjct 592416 TTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTATCGGATGGCTCAACCTCCAAAGTG 592357 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || |||| ||| || || ||||| ||||| Sbjct 592356 ATGGTCTTGCCGGTCAGAGTCTTAACGAAAATTTGCAT 592319 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| ||||| || || || ||| || || || ||||| || || ||| | || Sbjct 593220 AGACGCAGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGT 593161 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| |||| |||||| ||||| || |||| ||||| ||||| | ||| | |||||| Sbjct 593160 CCGTCCTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCC 593101 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | | || || | ||| || |||| || Sbjct 593100 TTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTATCGGATGGCTCAACTTCCAAGGTG 593041 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || |||| ||| || || || |||||||| Sbjct 593040 ATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCAT 593003 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| ||||| || || || ||| || || || ||||| || || ||| | || Sbjct 592992 AGACGCAGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGT 592933 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| |||| |||||| ||||| || |||| ||||| ||||| | ||| | |||||| Sbjct 592932 CCGTCCTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCC 592873 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || || | | | || || | ||| || |||| || Sbjct 592872 TTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTATCGGATGGCTCAACTTCCAAGGTG 592813 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || |||| ||| || || || |||||||| Sbjct 592812 ATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCAT 592775 >seq1553 Length=5866729 Score = 95.1 bits (104), Expect = 9e-15 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | |||||| || || || ||| || || || ||||| || || ||| | || Sbjct 2325476 AGGCGGAGCACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGG 2325417 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| |||||| || || || ||||| ||||| ||||| | ||||| ||||||| Sbjct 2325416 CCATCCTCCAGCTGCTTGCCCGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCC 2325357 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || ||||| || ||| | | | || || | ||||||||||| || Sbjct 2325356 TTATCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCAGAAGGCTCCACCTCCAAGGTG 2325297 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 || || || || || | ||||| || || |||||||| ||| Sbjct 2325296 ATGGTCTTGCCGGTGAGGGTTTTCACGAAGATCTGCATAGTG 2325255 >seq1556 Length=7591821 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||||||| || || ||| || || || |||||||| || || | || |||| ||| Sbjct 3893223 ACCAAATGGAGGGTTGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCGTCTTCC 3893282 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 || ||||| || || || ||||| ||||| ||||| | ||||| ||||||||||| Sbjct 3893283 AATTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCTTGG 3893342 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 || || || ||| | | | || || | ||| ||||||| || || || || Sbjct 3893343 ATTTTAGCCTTCACATTCTCAATGGTGTCCGATGGCTCAACCTCCAAAGTGATGGTCTTG 3893402 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || | || || || || |||||||| Sbjct 3893403 CCAGTGAGGGTCTTCACGAAGATCTGCAT 3893431 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||||||| || || ||| || || || |||||||| || || | || |||| ||| Sbjct 3893907 ACCAAATGGAGGGTTGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCGTCTTCC 3893966 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 || ||||| || || || ||||| ||||| ||||| | ||||| ||||||||||| Sbjct 3893967 AATTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCTTGG 3894026 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 || || || ||| | | | || || | ||| ||||||| || || || || Sbjct 3894027 ATTTTAGCCTTCACATTCTCAATGGTGTCCGATGGCTCAACCTCCAAAGTGATGGTCTTG 3894086 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || | || || || || |||||||| Sbjct 3894087 CCAGTGAGGGTCTTCACGAAGATCTGCAT 3894115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380869208725113