Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18] 14,731 sequences; 166,592,095 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq1557 262 7e-65 seq1555 255 1e-62 >seq1557 Length=14215200 Score = 262 bits (290), Expect = 7e-65 Identities = 557/824 (68%), Gaps = 13/824 (2%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| ||| |||| | ||||| || ||||| ||||| || |||| ||| || |||| Sbjct 5421664 CTGGTACTCCGCCACCTTCTTCTCGAAAAAGTTGGTCTTTCCGTCCAGCGATATCATCTC 5421723 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAG 47958 ||||||| || ||||| ||||| || | | | | ||||| || | |||| Sbjct 5421724 CATGAAGTTAAATGGGTTTTTGGTGTTGTAGATCTTTCCAACGCCCAACTCCACGAGCAA 5421783 Query 47959 GTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGA 48018 | ||||| ||| |||| ||||| | ||||| ||| | |||||||| || | Sbjct 5421784 ACGGTCCGCTACGAACTCAATGTACTGGGACATCAGGTCGCAATTCATGCCGATCAAATT 5421843 Query 48019 CACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTG 48078 ||||||| || | ||||| ||||||| |||||| ||| || || | | |||| Sbjct 5421844 GACGGGCAGGGCATCGGTGAGGAACTCCTGCTCTATGGCCACCGCGTCGCGGATGATCTC 5421903 Query 48079 CTTAACGCGGGACTCTGAG---GGTTTGTTGCGC-AGGTGCTTGGCATAGAGCATGCA-G 48133 | | ||| ||| | | || | | ||| | ||||||| | | | || ||| | Sbjct 5421904 GATGATGCG---CTC-GCGCTTGGGTCGCTGCACCAGGTGCTGGA---ACATCA-GCACG 5421955 Query 48134 GCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCA 48193 |||||||| | ||||||||| ||||| || ||| ||| ||||||||||| | ||| Sbjct 5421956 GCAAAGTCGCAGTGCAAGCCCTCGTCGCGAGAGATCAGCTCGTTGGAGAAGGTCAATCCA 5422015 Query 48194 GGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATG 48253 ||||| | || | || || ||||||||||| | ||||| ||| |||||| ||| Sbjct 5422016 GGCATCAGACCGCGCTTCTTAAGCCAGAAAATGGAGGCGAAGCTGCCGCTGAAGAAAATG 5422075 Query 48254 CCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATC 48313 |||||||| || || || ||| ||| | ||| |||||| || |||| ||||||| Sbjct 5422076 CCCTCCACGGCGGCAAAGGCGATGATGCGCTCCCCGAAATTGGCCGACTTGGATGAGATC 5422135 Query 48314 CAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAG 48373 ||||| || |||||||||||||| ||| | |||||||| || || || ||| Sbjct 5422136 CAGGACAGGGCCCAGTCTGCCTTGCGCTTCACAGCCGGCATCGTTTCGATAGCGTTGAAC 5422195 Query 48374 AGCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCTCA 48433 || | || | || || ||| | || || || || ||||||||| Sbjct 5422196 AGGTACTCTCGCTGGTGTGGATCCCGGATGTAAGTGTCGATCAAAACACTGTACATCTCC 5422255 Query 48434 GAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGC 48493 |||||||| ||||| || ||||||||||| ||||||||| | ||||| | |||| Sbjct 5422256 GAGTGCACGTTCTCCATGGCGATCTGGAAGCCGTAGAAGCATCGTGCCTCCGTGATCTGC 5422315 Query 48494 ACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAG 48553 || || ||| | ||||| ||| ||||| || || || ||||| || || || ||| Sbjct 5422316 ACCTCCTGACTGAAGCGCTCCACCAGGTTCTCGTTTACGATGCCATCAGAGGCGGCGAAG 5422375 Query 48554 AAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCTGT 48613 ||||| || || || | |||||||||||||| || | || | |||| | Sbjct 5422376 AAGGCCAGCACGTGCGAGATGAAATGGCGCTCGTCGTCCTTCAGGCGGTGCCAGTCAGTA 5422435 Query 48614 ACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGC 48657 | ||| ||| || ||||| || || || |||||||| || || Sbjct 5422436 AGGTCCTTGGACAAATCCACCTCCTCGACGGTCCAGAAAGAAGC 5422479 Score = 89.7 bits (98), Expect = 1e-12 Identities = 155/224 (69%), Gaps = 1/224 (0%) Strand=Plus/Minus Query 241401 GGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACG 241460 |||| |||||| || |||||||| || ||||| ||||| |||||| || Sbjct 3601198 GGCA-ATGTGCTCCATCACCTCCTGCTTCAGTTGCGCCACATGGTCCTTGAGGTTCTTTA 3601140 Query 241461 CGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCG 241520 || | | | ||| | |||| || |||||| ||||| || ||||||||| | Sbjct 3601139 CGATGCTAGCCAGGTCGACGTTCTCGCCCTTGAGTACCTTTACGCGATCCTCCAGCTTTG 3601080 Query 241521 CGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCT 241580 |||||| ||||| |||||| |||||| |||| || |||| ||||| || | |||| Sbjct 3601079 AGATGCGCTCCAGCTTGCGCTTGCGGCACTTGGATGCAGCCACACGGTTACGCTGCCTCT 3601020 Query 241581 TACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGA 241624 | || ||| |||||| |||||| ||||||||||| ||| Sbjct 3601019 TGCGCTCCAGCTTGATCTTTTCCTGCGTTTCCATGTCGATGGGA 3600976 >seq1555 Length=7220098 Score = 255 bits (282), Expect = 1e-62 Identities = 1208/1893 (64%), Gaps = 107/1893 (6%) Strand=Plus/Plus Query 212551 TCACCGTAAACTGTACTGGATCAGCAGCAGCCTTGGTGCGTAGATAGTACATGCCGGTCT 212610 |||| || ||||| | | || ||||| | ||||||||| ||||||||||| ||||| | Sbjct 5750475 TCACGGTGAACTGAATGGCATTCGCAGCTGGCTTGGTGCGCAGATAGTACATTCCGGTTT 5750534 Query 212611 TTAGGCCCTTGCC--CCAGCCGTGCATGTGCATTGCTGTGAGTTTCTTCAGCTTAATATT 212668 | || || ||| |||| || | ||| || | || || || | ||| | Sbjct 5750535 TAAGACC--TGCTTTCCAGGAGTAAAAGTGTATGGAAGTCAGCTT-------TCCATAGT 5750585 Query 212669 CTGGTCATCCTCGTGGCCCAGATGTAGGTTCAGGGACTGACTCTGGTCTATGAATGGGGC 212728 ||| |||| ||| ||||| ||| | ||||||||||| |||||||| | | Sbjct 5750586 TTGG-----CTCGG---CCACATGTATGTTGAACGACTGACTCTGATCTATGAACGCACC 5750637 Query 212729 CCTGTCAGCGGCCATGTCTATGAT--ATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAG 212786 | || |||||||| | || | | | ||| ||| |||||||| ||||| | Sbjct 5750638 ACGATCGGCGGCCATTTTAATCGTGGACTTGACTG--AGATTTCCCACACCGTCTTATAC 5750695 Query 212787 ATTTCTTTGAGGTCCTCTGGGAAGCCGGGGATGTTCTGCACAGACCCCCTG-TG--TATG 212843 | ||| | | || |||| | ||||| || | || |||||| || |||| Sbjct 5750696 AGATCTCGCACCTTCTGGGGGATGGTCTCAATGTTTTGAATCGATCCCCTGCTGGATATG 5750755 Query 212844 GTCAGCTGCAGGCGCATGTCCTCGTTCCAGAGGCCC--CTGGTCTCCAGGCACTTGACCA 212901 || | | | |||||| |||| ||| | | || || | | ||| | || Sbjct 5750756 ATCTGGTTCTT---CATGTCGTCGTCCCACAAGTCCAGCTCGGTT--AGGTCGCGCAACA 5750810 Query 212902 GGTGAGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAG 212961 ||| ||||||| | |||||| || || || || || | || ||| | ||| | | Sbjct 5750811 AATGATGGTTGACCACCTGGAATTCGCCGGACAGAACTCGCCGGGTGTATATGTTCGTGG 5750870 Query 212962 TGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGG 213021 |||||||||||| | || ||||| |||| ||||| || || || |||||||||| Sbjct 5750871 TGTAGGGCTCGAAGGATTCATTGTTGCCCATTATCTGAGCCGTAGATGCAGTGGGCATGG 5750930 Query 213022 GAGCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCG--AAGCTCTGC 213079 |||| || || || ||||| || ||||||| ||| | | || || ||||| Sbjct 5750931 GAGCAACGAGCAGGGAGTTCCGGACACCGTGCTTCTTAATG-GACTCCTTCAATTTCTGC 5750989 Query 213080 CCAGTCCCATCTGCCAGACAGGTCCTCGT-----CCTTCACGTTCCACATGTCAAACTGC 213134 | ||||||| ||||| |||| |||| || ||||||||| ||||| Sbjct 5750990 C-AGTCCCA---------CAGGT--TCGTTGGCACCTT---GTCCCACATGTCGTACTGC 5751034 Query 213135 AAGATGCCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCC 213194 || || ||||||||||| |||||||||| ||| | ||| | || | || |||| Sbjct 5751035 AAAATTCCTTTGCTCACCGGGCTGCCCTCGTAGGTTTCGTATGCACCTTCGGTCTGGGCC 5751094 Query 213195 AGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGA-- 213252 || |||||| || | || ||| | ||||| |||||||| ||||||| | || | Sbjct 5751095 AGTTCGCAGCTGGCTTCCAAGGCGCCATAGTAAATGGTTTCGAATATCTGCTGATTCAAA 5751154 Query 213253 ------GCTTCTTGGCCTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAG 213306 ||||||| || | | ||| ||| |||| | || || |||||| Sbjct 5751155 AGACCGGCTTCTTCGCTTTCGT--ACGGGAAACGCATGAGAATC------AAGGCATCAG 5751206 Query 213307 CCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTGGAGCACTCCT 213366 | | ||||| | || ||||| | ||| | ||| |||| || ||||| |||| Sbjct 5751207 CGAATCCCTGAATACCAATGCCCACGGGACGGTGCCTCAAATTGGACTTCCTTGCCTCCG 5751266 Query 213367 CCAAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGA 213426 || ||| ||| ||||| || || |||||||| || || ||| | | ||||||| Sbjct 5751267 GCAGGGGATAATAGTTGATATCAATTATCTTGTTTAGATTTTTGGTAACTATCTTGGTGA 5751326 Query 213427 CATGGGCCAGGTACTCGTGATTGAACACGTAGCCCCCGTCCTGCACAAACTCAGGCAGGG 213486 | | || | || || | |||| | ||| | || || ||| |||| Sbjct 5751327 CTTCCTTGAGCTTCTTAAAATC--ATACGTCTTCTCCGGCGTG-ACGAACATGTTGAGGG 5751383 Query 213487 CGATGCTGGCCAGGTTGCAAACGGCCACCTCCT---GAGAGTCTGTGTACTCCATGATCT 213543 ||||| ||||| |||||| || || | ||| | | ||| | || || | ||| | Sbjct 5751384 CGATGGAGGCCAAGTTGCAGACTGCAATCTCATCCGGTGAG---GAATATTCAACGATTT 5751440 Query 213544 CGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGG 213603 | ||||||| ||||||||| ||||||||||| ||||| ||||| ||| |||| Sbjct 5751441 CCGTGCACAAGTTGCTGCACTTGATGGTGCCCACATTCTGCTGGTTGCTCTTCCTGTTGC 5751500 Query 213604 CAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGC 213663 || |||||| |||||||||| || |||||||| | || | | | | || ||| Sbjct 5751501 AAGCGTCCTTGAAGAGCATGTACGGATTTCCGGTCTCCACTTGCGCCTCAATGAT--GGC 5751558 Query 213664 T--CCAGAGGTACCTGGCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGC-CTCGTACT 213720 ||| ||| | ||||| ||| || || | ||| | | |||||| | Sbjct 5751559 AAACCACAGGGATTGAGCCTTAACCGTTCGGTTGGC----CCGACCCTCTTGCTCGTATT 5751614 Query 213721 GTTCGTAGAGCTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGACAGGATGCGG 213780 ||||| |||| | |||||| | |||||| || || || || ||||| || Sbjct 5751615 TCTCGTACAGCTTTTCGAATTCATCGCCCCACACTTCGTGGAGACCAGGACACTTGTGGG 5751674 Query 213781 GACACATGAGGCTCCAGTCCCCGTCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCC 213840 | |||||||| ||| || |||| | || | | |||||| || || || | || Sbjct 5751675 GGCACATGAGCGACCAATCACCGTTGGCCTCAACGCGTTTCATGAAGAGATCGGGTATCC 5751734 Query 213841 ACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGAT 213900 |||| ||| ||||| || | | | |||| || || | ||| || ||| | Sbjct 5751735 ACAGGGCGTAAAACAGATCGCGTGCGCGATTCTCTTCTTTGCCCGTGTTCTTCTTCAGTT 5751794 Query 213901 CTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGCC 213960 | || || ||||||| |||| |||||| || |||| || ||||||||||| || || | Sbjct 5751795 CCAGGAACTCAAAGACATCCGAGTGCCAGGGTTCCAAATAAATGGCAAAGGCACCGGGAC 5751854 Query 213961 TCTTGCCG---CCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTA 214017 ||||||| ||||| ||||| | ||||| | ||||||| | ||| | ||| | Sbjct 5751855 GCTTGCCGCCTCCCTGATCCACATAACGTGCCACATTATTGAAGACCCTCAGCATGGGAA 5751914 Query 214018 CCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAGGTTGC 214077 ||| ||| ||||| || || || || || | | ||| || | | | Sbjct 5751915 CCAACCCATTGGAAGTACCATTTGTGCCGCAAATCGAGGTGCCCTTTGCACGAATGCAAT 5751974 Query 214078 TCATGGAGAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTCT 214137 || | ||| || |||||||||||| ||||||||||||||||||| | ||||| || Sbjct 5751975 GCACGTTGAGTCCGATGCCACCGGCGGACTTGGAGATCATGGCGCATTGTTCCACAGACT 5752034 Query 214138 CCATGATGCCGGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGGG 214197 | ||||| | ||| ||| |||| | | |||| | ||| || ||| | ||| | Sbjct 5752035 TGAAAATGCCCTCGATGGAGTCGGCTGTCATGGTCAGAAGGAAACACGACGACAACTGCG 5752094 Query 214198 GCCTGGACGAGCCAGAGTTGAAAAGCGTGGGGCTGGCATGGATCATAAACTTG---TTAG 214254 ||| | | | ||| | || || ||||| ||||| | | || | | | | Sbjct 5752095 GCCGGTTTGTGGCAGCGGCAAACAGTGTGGGCGATGCATG---CGTGAAGTAGCGCTCCG 5752151 Query 214255 AGAGGAGCCTGTAGGTCTCCAGGACTGAGGGGATGTCGTGCTTGTGGATCTGTAGAGCGC 214314 | || || | ||||| |||| | | | ||| || | |||| | || ||| Sbjct 5752152 ACAGAAGATTATAGGTTTCCACGGCCGCATCGATATCCTCTCCATGGA--TTCCGATCGC 5752209 Query 214315 A--CCTCATCAGCATGTGCTGGGGCCTCTCTATGGGTCCTTT--GGGGCCCTTGAGCAGG 214370 | | ||||||||| ||||| || || || || | |||| | | |||||| || Sbjct 5752210 AACGCGCATCAGCATATGCTGCGG--TCGCTCTGCGATCTTTCCGTTTCTCTTGAGAAGA 5752267 Query 214371 TAGGAGCGCTCCAGAGTCTTGAACCCAAAGTAG 214403 ||||| |||||||| |||||||| ||||| ||| Sbjct 5752268 TAGGAACGCTCCAGCGTCTTGAAGCCAAAATAG 5752300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931361269879040