Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18]
14,731 sequences; 166,592,095 total letters
Query= NC_019491.1
Length=291144
Score E
Sequences producing significant alignments: (Bits) Value
seq1557 262 7e-65
seq1555 255 1e-62
>seq1557
Length=14215200
Score = 262 bits (290), Expect = 7e-65
Identities = 557/824 (68%), Gaps = 13/824 (2%)
Strand=Plus/Plus
Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898
|||||| ||| |||| | ||||| || ||||| ||||| || |||| ||| || ||||
Sbjct 5421664 CTGGTACTCCGCCACCTTCTTCTCGAAAAAGTTGGTCTTTCCGTCCAGCGATATCATCTC 5421723
Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAG 47958
||||||| || ||||| ||||| || | | | | ||||| || | ||||
Sbjct 5421724 CATGAAGTTAAATGGGTTTTTGGTGTTGTAGATCTTTCCAACGCCCAACTCCACGAGCAA 5421783
Query 47959 GTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGA 48018
| ||||| ||| |||| ||||| | ||||| ||| | |||||||| || |
Sbjct 5421784 ACGGTCCGCTACGAACTCAATGTACTGGGACATCAGGTCGCAATTCATGCCGATCAAATT 5421843
Query 48019 CACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTG 48078
||||||| || | ||||| ||||||| |||||| ||| || || | | ||||
Sbjct 5421844 GACGGGCAGGGCATCGGTGAGGAACTCCTGCTCTATGGCCACCGCGTCGCGGATGATCTC 5421903
Query 48079 CTTAACGCGGGACTCTGAG---GGTTTGTTGCGC-AGGTGCTTGGCATAGAGCATGCA-G 48133
| | ||| ||| | | || | | ||| | ||||||| | | | || ||| |
Sbjct 5421904 GATGATGCG---CTC-GCGCTTGGGTCGCTGCACCAGGTGCTGGA---ACATCA-GCACG 5421955
Query 48134 GCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCA 48193
|||||||| | ||||||||| ||||| || ||| ||| ||||||||||| | |||
Sbjct 5421956 GCAAAGTCGCAGTGCAAGCCCTCGTCGCGAGAGATCAGCTCGTTGGAGAAGGTCAATCCA 5422015
Query 48194 GGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATG 48253
||||| | || | || || ||||||||||| | ||||| ||| |||||| |||
Sbjct 5422016 GGCATCAGACCGCGCTTCTTAAGCCAGAAAATGGAGGCGAAGCTGCCGCTGAAGAAAATG 5422075
Query 48254 CCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATC 48313
|||||||| || || || ||| ||| | ||| |||||| || |||| |||||||
Sbjct 5422076 CCCTCCACGGCGGCAAAGGCGATGATGCGCTCCCCGAAATTGGCCGACTTGGATGAGATC 5422135
Query 48314 CAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAG 48373
||||| || |||||||||||||| ||| | |||||||| || || || |||
Sbjct 5422136 CAGGACAGGGCCCAGTCTGCCTTGCGCTTCACAGCCGGCATCGTTTCGATAGCGTTGAAC 5422195
Query 48374 AGCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCTCA 48433
|| | || | || || ||| | || || || || |||||||||
Sbjct 5422196 AGGTACTCTCGCTGGTGTGGATCCCGGATGTAAGTGTCGATCAAAACACTGTACATCTCC 5422255
Query 48434 GAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGC 48493
|||||||| ||||| || ||||||||||| ||||||||| | ||||| | ||||
Sbjct 5422256 GAGTGCACGTTCTCCATGGCGATCTGGAAGCCGTAGAAGCATCGTGCCTCCGTGATCTGC 5422315
Query 48494 ACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAG 48553
|| || ||| | ||||| ||| ||||| || || || ||||| || || || |||
Sbjct 5422316 ACCTCCTGACTGAAGCGCTCCACCAGGTTCTCGTTTACGATGCCATCAGAGGCGGCGAAG 5422375
Query 48554 AAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCTGT 48613
||||| || || || | |||||||||||||| || | || | |||| |
Sbjct 5422376 AAGGCCAGCACGTGCGAGATGAAATGGCGCTCGTCGTCCTTCAGGCGGTGCCAGTCAGTA 5422435
Query 48614 ACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGC 48657
| ||| ||| || ||||| || || || |||||||| || ||
Sbjct 5422436 AGGTCCTTGGACAAATCCACCTCCTCGACGGTCCAGAAAGAAGC 5422479
Score = 89.7 bits (98), Expect = 1e-12
Identities = 155/224 (69%), Gaps = 1/224 (0%)
Strand=Plus/Minus
Query 241401 GGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACG 241460
|||| |||||| || |||||||| || ||||| ||||| |||||| ||
Sbjct 3601198 GGCA-ATGTGCTCCATCACCTCCTGCTTCAGTTGCGCCACATGGTCCTTGAGGTTCTTTA 3601140
Query 241461 CGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCG 241520
|| | | | ||| | |||| || |||||| ||||| || ||||||||| |
Sbjct 3601139 CGATGCTAGCCAGGTCGACGTTCTCGCCCTTGAGTACCTTTACGCGATCCTCCAGCTTTG 3601080
Query 241521 CGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCT 241580
|||||| ||||| |||||| |||||| |||| || |||| ||||| || | ||||
Sbjct 3601079 AGATGCGCTCCAGCTTGCGCTTGCGGCACTTGGATGCAGCCACACGGTTACGCTGCCTCT 3601020
Query 241581 TACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGA 241624
| || ||| |||||| |||||| ||||||||||| |||
Sbjct 3601019 TGCGCTCCAGCTTGATCTTTTCCTGCGTTTCCATGTCGATGGGA 3600976
>seq1555
Length=7220098
Score = 255 bits (282), Expect = 1e-62
Identities = 1208/1893 (64%), Gaps = 107/1893 (6%)
Strand=Plus/Plus
Query 212551 TCACCGTAAACTGTACTGGATCAGCAGCAGCCTTGGTGCGTAGATAGTACATGCCGGTCT 212610
|||| || ||||| | | || ||||| | ||||||||| ||||||||||| ||||| |
Sbjct 5750475 TCACGGTGAACTGAATGGCATTCGCAGCTGGCTTGGTGCGCAGATAGTACATTCCGGTTT 5750534
Query 212611 TTAGGCCCTTGCC--CCAGCCGTGCATGTGCATTGCTGTGAGTTTCTTCAGCTTAATATT 212668
| || || ||| |||| || | ||| || | || || || | ||| |
Sbjct 5750535 TAAGACC--TGCTTTCCAGGAGTAAAAGTGTATGGAAGTCAGCTT-------TCCATAGT 5750585
Query 212669 CTGGTCATCCTCGTGGCCCAGATGTAGGTTCAGGGACTGACTCTGGTCTATGAATGGGGC 212728
||| |||| ||| ||||| ||| | ||||||||||| |||||||| | |
Sbjct 5750586 TTGG-----CTCGG---CCACATGTATGTTGAACGACTGACTCTGATCTATGAACGCACC 5750637
Query 212729 CCTGTCAGCGGCCATGTCTATGAT--ATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAG 212786
| || |||||||| | || | | | ||| ||| |||||||| ||||| |
Sbjct 5750638 ACGATCGGCGGCCATTTTAATCGTGGACTTGACTG--AGATTTCCCACACCGTCTTATAC 5750695
Query 212787 ATTTCTTTGAGGTCCTCTGGGAAGCCGGGGATGTTCTGCACAGACCCCCTG-TG--TATG 212843
| ||| | | || |||| | ||||| || | || |||||| || ||||
Sbjct 5750696 AGATCTCGCACCTTCTGGGGGATGGTCTCAATGTTTTGAATCGATCCCCTGCTGGATATG 5750755
Query 212844 GTCAGCTGCAGGCGCATGTCCTCGTTCCAGAGGCCC--CTGGTCTCCAGGCACTTGACCA 212901
|| | | | |||||| |||| ||| | | || || | | ||| | ||
Sbjct 5750756 ATCTGGTTCTT---CATGTCGTCGTCCCACAAGTCCAGCTCGGTT--AGGTCGCGCAACA 5750810
Query 212902 GGTGAGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAG 212961
||| ||||||| | |||||| || || || || || | || ||| | ||| | |
Sbjct 5750811 AATGATGGTTGACCACCTGGAATTCGCCGGACAGAACTCGCCGGGTGTATATGTTCGTGG 5750870
Query 212962 TGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGG 213021
|||||||||||| | || ||||| |||| ||||| || || || ||||||||||
Sbjct 5750871 TGTAGGGCTCGAAGGATTCATTGTTGCCCATTATCTGAGCCGTAGATGCAGTGGGCATGG 5750930
Query 213022 GAGCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCG--AAGCTCTGC 213079
|||| || || || ||||| || ||||||| ||| | | || || |||||
Sbjct 5750931 GAGCAACGAGCAGGGAGTTCCGGACACCGTGCTTCTTAATG-GACTCCTTCAATTTCTGC 5750989
Query 213080 CCAGTCCCATCTGCCAGACAGGTCCTCGT-----CCTTCACGTTCCACATGTCAAACTGC 213134
| ||||||| ||||| |||| |||| || ||||||||| |||||
Sbjct 5750990 C-AGTCCCA---------CAGGT--TCGTTGGCACCTT---GTCCCACATGTCGTACTGC 5751034
Query 213135 AAGATGCCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCC 213194
|| || ||||||||||| |||||||||| ||| | ||| | || | || ||||
Sbjct 5751035 AAAATTCCTTTGCTCACCGGGCTGCCCTCGTAGGTTTCGTATGCACCTTCGGTCTGGGCC 5751094
Query 213195 AGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGA-- 213252
|| |||||| || | || ||| | ||||| |||||||| ||||||| | || |
Sbjct 5751095 AGTTCGCAGCTGGCTTCCAAGGCGCCATAGTAAATGGTTTCGAATATCTGCTGATTCAAA 5751154
Query 213253 ------GCTTCTTGGCCTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAG 213306
||||||| || | | ||| ||| |||| | || || ||||||
Sbjct 5751155 AGACCGGCTTCTTCGCTTTCGT--ACGGGAAACGCATGAGAATC------AAGGCATCAG 5751206
Query 213307 CCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTGGAGCACTCCT 213366
| | ||||| | || ||||| | ||| | ||| |||| || ||||| ||||
Sbjct 5751207 CGAATCCCTGAATACCAATGCCCACGGGACGGTGCCTCAAATTGGACTTCCTTGCCTCCG 5751266
Query 213367 CCAAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGA 213426
|| ||| ||| ||||| || || |||||||| || || ||| | | |||||||
Sbjct 5751267 GCAGGGGATAATAGTTGATATCAATTATCTTGTTTAGATTTTTGGTAACTATCTTGGTGA 5751326
Query 213427 CATGGGCCAGGTACTCGTGATTGAACACGTAGCCCCCGTCCTGCACAAACTCAGGCAGGG 213486
| | || | || || | |||| | ||| | || || ||| ||||
Sbjct 5751327 CTTCCTTGAGCTTCTTAAAATC--ATACGTCTTCTCCGGCGTG-ACGAACATGTTGAGGG 5751383
Query 213487 CGATGCTGGCCAGGTTGCAAACGGCCACCTCCT---GAGAGTCTGTGTACTCCATGATCT 213543
||||| ||||| |||||| || || | ||| | | ||| | || || | ||| |
Sbjct 5751384 CGATGGAGGCCAAGTTGCAGACTGCAATCTCATCCGGTGAG---GAATATTCAACGATTT 5751440
Query 213544 CGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGG 213603
| ||||||| ||||||||| ||||||||||| ||||| ||||| ||| ||||
Sbjct 5751441 CCGTGCACAAGTTGCTGCACTTGATGGTGCCCACATTCTGCTGGTTGCTCTTCCTGTTGC 5751500
Query 213604 CAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGC 213663
|| |||||| |||||||||| || |||||||| | || | | | | || |||
Sbjct 5751501 AAGCGTCCTTGAAGAGCATGTACGGATTTCCGGTCTCCACTTGCGCCTCAATGAT--GGC 5751558
Query 213664 T--CCAGAGGTACCTGGCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGC-CTCGTACT 213720
||| ||| | ||||| ||| || || | ||| | | |||||| |
Sbjct 5751559 AAACCACAGGGATTGAGCCTTAACCGTTCGGTTGGC----CCGACCCTCTTGCTCGTATT 5751614
Query 213721 GTTCGTAGAGCTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGACAGGATGCGG 213780
||||| |||| | |||||| | |||||| || || || || ||||| ||
Sbjct 5751615 TCTCGTACAGCTTTTCGAATTCATCGCCCCACACTTCGTGGAGACCAGGACACTTGTGGG 5751674
Query 213781 GACACATGAGGCTCCAGTCCCCGTCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCC 213840
| |||||||| ||| || |||| | || | | |||||| || || || | ||
Sbjct 5751675 GGCACATGAGCGACCAATCACCGTTGGCCTCAACGCGTTTCATGAAGAGATCGGGTATCC 5751734
Query 213841 ACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGAT 213900
|||| ||| ||||| || | | | |||| || || | ||| || ||| |
Sbjct 5751735 ACAGGGCGTAAAACAGATCGCGTGCGCGATTCTCTTCTTTGCCCGTGTTCTTCTTCAGTT 5751794
Query 213901 CTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGCC 213960
| || || ||||||| |||| |||||| || |||| || ||||||||||| || || |
Sbjct 5751795 CCAGGAACTCAAAGACATCCGAGTGCCAGGGTTCCAAATAAATGGCAAAGGCACCGGGAC 5751854
Query 213961 TCTTGCCG---CCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTA 214017
||||||| ||||| ||||| | ||||| | ||||||| | ||| | ||| |
Sbjct 5751855 GCTTGCCGCCTCCCTGATCCACATAACGTGCCACATTATTGAAGACCCTCAGCATGGGAA 5751914
Query 214018 CCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAGGTTGC 214077
||| ||| ||||| || || || || || | | ||| || | | |
Sbjct 5751915 CCAACCCATTGGAAGTACCATTTGTGCCGCAAATCGAGGTGCCCTTTGCACGAATGCAAT 5751974
Query 214078 TCATGGAGAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTCT 214137
|| | ||| || |||||||||||| ||||||||||||||||||| | ||||| ||
Sbjct 5751975 GCACGTTGAGTCCGATGCCACCGGCGGACTTGGAGATCATGGCGCATTGTTCCACAGACT 5752034
Query 214138 CCATGATGCCGGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGGG 214197
| ||||| | ||| ||| |||| | | |||| | ||| || ||| | ||| |
Sbjct 5752035 TGAAAATGCCCTCGATGGAGTCGGCTGTCATGGTCAGAAGGAAACACGACGACAACTGCG 5752094
Query 214198 GCCTGGACGAGCCAGAGTTGAAAAGCGTGGGGCTGGCATGGATCATAAACTTG---TTAG 214254
||| | | | ||| | || || ||||| ||||| | | || | | | |
Sbjct 5752095 GCCGGTTTGTGGCAGCGGCAAACAGTGTGGGCGATGCATG---CGTGAAGTAGCGCTCCG 5752151
Query 214255 AGAGGAGCCTGTAGGTCTCCAGGACTGAGGGGATGTCGTGCTTGTGGATCTGTAGAGCGC 214314
| || || | ||||| |||| | | | ||| || | |||| | || |||
Sbjct 5752152 ACAGAAGATTATAGGTTTCCACGGCCGCATCGATATCCTCTCCATGGA--TTCCGATCGC 5752209
Query 214315 A--CCTCATCAGCATGTGCTGGGGCCTCTCTATGGGTCCTTT--GGGGCCCTTGAGCAGG 214370
| | ||||||||| ||||| || || || || | |||| | | |||||| ||
Sbjct 5752210 AACGCGCATCAGCATATGCTGCGG--TCGCTCTGCGATCTTTCCGTTTCTCTTGAGAAGA 5752267
Query 214371 TAGGAGCGCTCCAGAGTCTTGAACCCAAAGTAG 214403
||||| |||||||| |||||||| ||||| |||
Sbjct 5752268 TAGGAACGCTCCAGCGTCTTGAAGCCAAAATAG 5752300
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 931361269879040
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