Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18]
14,731 sequences; 166,592,095 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq1557 152 1e-31
seq1555 136 7e-27
>seq1557
Length=14215200
Score = 152 bits (168), Expect = 1e-31
Identities = 351/522 (67%), Gaps = 10/522 (2%)
Strand=Plus/Minus
Query 25512 CTGGACCGCCGAAGAGATTGATCTGGCCAAGGACATGGACGGCTGGTACGCTCTATCCAA 25571
|||||||| ||| ||| | ||| || |||||||| | | |||| || || |
Sbjct 5422471 CTGGACCGTCGAGGAGGTGGATTTGTCCAAGGACCTTACTGACTGGCACCGCCTGAAGGA 5422412
Query 25572 AGACGAGCAGCATTTTCTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGT 25631
||||||| ||||| || | ||||| |||| ||||| || ||||||||||| || ||
Sbjct 5422411 CGACGAGCGCCATTTCATCTCGCACGTGCTGGCCTTCTTCGCCGCCTCTGATGGCATCGT 5422352
Query 25632 GAACGAGAATCTGTGCGAGAGATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTT 25691
|||||||| ||| ||| | |||| ||| |||||| | |||||| || ||
Sbjct 5422351 AAACGAGAACCTGGTGGAGCGCTTCAGTCAGGAGGTGCAGATCACGGAGGCACGATGCTT 5422292
Query 25692 CTACGGTTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGAT 25751
|||||| |||||||| ||||| || || |||||||| ||| |||| || || ||||
Sbjct 5422291 CTACGGCTTCCAGATCGCCATGGAGAACGTGCACTCGGAGATGTA---CAGTGTTTTGAT 5422235
Query 25752 ---GACGTACATTACAGA-CGTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACA 25807
|| ||||| || | | || || |||| ||||| || ||||| |
Sbjct 5422234 CGACACTTACATCCGGGATCCACACC-AGCGAGAGTACCTGTTCAACGCTATCGAAACGA 5422176
Query 25808 TACCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCC-AGAGCGCT 25866
| || | ||| | ||||| |||||| || |||||| || || || ||
Sbjct 5422175 TGCCGGCTGTGAAGCGCAAGGCAGACTGGGCCCTGTCCTGGATC-TCATCCAAGTCGGCC 5422117
Query 25867 ACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCG 25926
| || || ||||| | | |||||||| || ||||||||||| || ||||||||
Sbjct 5422116 AATTTCGGGGAGCGCATCATCGCCTTTGCCGCCGTGGAGGGCATTTTCTTCAGCGGCAGC 5422057
Query 25927 TTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAAC 25986
|| || |||| |||||||| ||| || || ||||| || || ||| ||||||
Sbjct 5422056 TTCGCCTCCATTTTCTGGCTTAAGAAGCGCGGTCTGATGCCTGGATTGACCTTCTCCAAC 5421997
Query 25987 GAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCC 26028
||||| ||| | |||||||| | ||| | || ||||||
Sbjct 5421996 GAGCTGATCTCTCGCGACGAGGGCTTGCACTGCGACTTTGCC 5421955
>seq1555
Length=7220098
Score = 136 bits (150), Expect = 7e-27
Identities = 517/808 (64%), Gaps = 15/808 (2%)
Strand=Plus/Plus
Query 221698 GTTTAGGGCAACGCTGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTAT 221757
||| ||||| | | ||||| ||| || || || | ||| ||| || ||| | |
Sbjct 5751376 GTTGAGGGCGATGGAGGCCAAGTTGCAGACTGCAATCTCATCCGGTGAGGAATATTCAAC 5751435
Query 221758 GATCTCTGTACAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCG 221817
||| || || || | |||||||||||||||||| |||| | | || || ||| |
Sbjct 5751436 GATTTCCGTGCACAAGTTGCTGCACTTGATGGTGCCCACATTCTGCTGGTTGCTCTTCCT 5751495
Query 221818 ATTGGCAGCGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAAT 221877
||| |||||||||| ||||||| | ||| || ||||||| || ||| | |||
Sbjct 5751496 GTTGCAAGCGTCCTTGAAGAGCATGTACGGATTTCCGGTCTCCACTTGCGCCTC---AAT 5751552
Query 221878 CTTGTC---CCAGAGTTCTCTGGCGCTCACCGTCCTCTTGACTGCACCCTCGGTCTTTTC 221934
|| | ||| || | || | ||||| | ||| | |||||| || |
Sbjct 5751553 GATGGCAAACCACAGGGATTGAGCCTTAACCGTTCGGTTGGCCCGACCCTCTTGCTCGTA 5751612
Query 221935 ATACCCGGTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCT 221994
| | || || ||| | || || | || || || | |||| || || |||||| |
Sbjct 5751613 TTTCTCG---TACAGCTTTTCGAATTCATCGCCCCACACTTCGTGGAGACCAGGACACTT 5751669
Query 221995 GGCGGGACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGG 222054
| ||| ||||| || ||| | |||| | | || | | ||||||||| || ||
Sbjct 5751670 GTGGGGGCACATGAGCGACCAATCACCGTTGGCCTCAACGCGTTTCATGAAGAGATCGGG 5751729
Query 222055 GATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCT 222114
|||||||| || | ||| ||||| | | || | ||| || ||| |||| ||| |
Sbjct 5751730 TATCCACAGGGCGTAAAACAGATCGCGTGCGCGATTCTCTTCTTTGCCCGTGTTCTTCTT 5751789
Query 222115 CAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCC 222174
||| |||| |||||||| | || | |||||| || |||| ||| | ||| | || ||
Sbjct 5751790 CAGTTCCAGGAACTCAAAGACATCCGAGTGCCAGGGTTCCAAATAAATGGCAAAGGCACC 5751849
Query 222175 GGGTCGCTTGTTGCCACCCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGT 222234
||| |||||| ||| ||||||||||| | ||| | ||||||| | || |
Sbjct 5751850 GGGACGCTTGCCGCCTCCCTGATCCACATAACGTGCCACATTATTGAAGACCCTCAGCAT 5751909
Query 222235 CGGTACCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAG 222294
|| |||| || ||||| ||| || ||||| ||| | | || || | |
Sbjct 5751910 GGGAACCAACCCATTGGAAGTACCATTTGTGCCGCAAATCGAGGTGCCCTTTGCACGAAT 5751969
Query 222295 GTTACTGGCAGACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAG 222354
| | | | ||||| ||||||||| || |||||||||||||| | |
Sbjct 5751970 GCAATGCACGTTGAGTCCGATGCCACCGGCGGACTTGGAGATCATGGCGCATTGTTCCAC 5752029
Query 222355 AGTGTCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACAT 222414
|| | | |||||||| || ||||| | | | | |||| || ||||| |||||||
Sbjct 5752030 AGACTTGAAAATGCCCTCGATGGAGTCGGCTGTCATGGTCAGAAGGAAACACGACGACAA 5752089
Query 222415 CTGAG---ATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCC 222471
||| | || |||| | ||| |||||| ||||| || || || |||||||
Sbjct 5752090 CTGCGGCCGGTTTGTGGCA---GCGGCAAACAGTGTGGGCGATGCATGCGTGAAGTAGCG 5752146
Query 222472 CCTAGACATCAGATCGTACGTCTCTACG 222499
| |||| |||| || || || |||
Sbjct 5752147 CTCCGACAGAAGATTATAGGTTTCCACG 5752174
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928673764840640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |