Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18] 14,731 sequences; 166,592,095 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq1557 152 1e-31 seq1555 136 7e-27 >seq1557 Length=14215200 Score = 152 bits (168), Expect = 1e-31 Identities = 351/522 (67%), Gaps = 10/522 (2%) Strand=Plus/Minus Query 25512 CTGGACCGCCGAAGAGATTGATCTGGCCAAGGACATGGACGGCTGGTACGCTCTATCCAA 25571 |||||||| ||| ||| | ||| || |||||||| | | |||| || || | Sbjct 5422471 CTGGACCGTCGAGGAGGTGGATTTGTCCAAGGACCTTACTGACTGGCACCGCCTGAAGGA 5422412 Query 25572 AGACGAGCAGCATTTTCTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGT 25631 ||||||| ||||| || | ||||| |||| ||||| || ||||||||||| || || Sbjct 5422411 CGACGAGCGCCATTTCATCTCGCACGTGCTGGCCTTCTTCGCCGCCTCTGATGGCATCGT 5422352 Query 25632 GAACGAGAATCTGTGCGAGAGATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTT 25691 |||||||| ||| ||| | |||| ||| |||||| | |||||| || || Sbjct 5422351 AAACGAGAACCTGGTGGAGCGCTTCAGTCAGGAGGTGCAGATCACGGAGGCACGATGCTT 5422292 Query 25692 CTACGGTTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGAT 25751 |||||| |||||||| ||||| || || |||||||| ||| |||| || || |||| Sbjct 5422291 CTACGGCTTCCAGATCGCCATGGAGAACGTGCACTCGGAGATGTA---CAGTGTTTTGAT 5422235 Query 25752 ---GACGTACATTACAGA-CGTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACA 25807 || ||||| || | | || || |||| ||||| || ||||| | Sbjct 5422234 CGACACTTACATCCGGGATCCACACC-AGCGAGAGTACCTGTTCAACGCTATCGAAACGA 5422176 Query 25808 TACCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCC-AGAGCGCT 25866 | || | ||| | ||||| |||||| || |||||| || || || || Sbjct 5422175 TGCCGGCTGTGAAGCGCAAGGCAGACTGGGCCCTGTCCTGGATC-TCATCCAAGTCGGCC 5422117 Query 25867 ACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCG 25926 | || || ||||| | | |||||||| || ||||||||||| || |||||||| Sbjct 5422116 AATTTCGGGGAGCGCATCATCGCCTTTGCCGCCGTGGAGGGCATTTTCTTCAGCGGCAGC 5422057 Query 25927 TTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAAC 25986 || || |||| |||||||| ||| || || ||||| || || ||| |||||| Sbjct 5422056 TTCGCCTCCATTTTCTGGCTTAAGAAGCGCGGTCTGATGCCTGGATTGACCTTCTCCAAC 5421997 Query 25987 GAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCC 26028 ||||| ||| | |||||||| | ||| | || |||||| Sbjct 5421996 GAGCTGATCTCTCGCGACGAGGGCTTGCACTGCGACTTTGCC 5421955 >seq1555 Length=7220098 Score = 136 bits (150), Expect = 7e-27 Identities = 517/808 (64%), Gaps = 15/808 (2%) Strand=Plus/Plus Query 221698 GTTTAGGGCAACGCTGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTAT 221757 ||| ||||| | | ||||| ||| || || || | ||| ||| || ||| | | Sbjct 5751376 GTTGAGGGCGATGGAGGCCAAGTTGCAGACTGCAATCTCATCCGGTGAGGAATATTCAAC 5751435 Query 221758 GATCTCTGTACAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCG 221817 ||| || || || | |||||||||||||||||| |||| | | || || ||| | Sbjct 5751436 GATTTCCGTGCACAAGTTGCTGCACTTGATGGTGCCCACATTCTGCTGGTTGCTCTTCCT 5751495 Query 221818 ATTGGCAGCGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAAT 221877 ||| |||||||||| ||||||| | ||| || ||||||| || ||| | ||| Sbjct 5751496 GTTGCAAGCGTCCTTGAAGAGCATGTACGGATTTCCGGTCTCCACTTGCGCCTC---AAT 5751552 Query 221878 CTTGTC---CCAGAGTTCTCTGGCGCTCACCGTCCTCTTGACTGCACCCTCGGTCTTTTC 221934 || | ||| || | || | ||||| | ||| | |||||| || | Sbjct 5751553 GATGGCAAACCACAGGGATTGAGCCTTAACCGTTCGGTTGGCCCGACCCTCTTGCTCGTA 5751612 Query 221935 ATACCCGGTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCT 221994 | | || || ||| | || || | || || || | |||| || || |||||| | Sbjct 5751613 TTTCTCG---TACAGCTTTTCGAATTCATCGCCCCACACTTCGTGGAGACCAGGACACTT 5751669 Query 221995 GGCGGGACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGG 222054 | ||| ||||| || ||| | |||| | | || | | ||||||||| || || Sbjct 5751670 GTGGGGGCACATGAGCGACCAATCACCGTTGGCCTCAACGCGTTTCATGAAGAGATCGGG 5751729 Query 222055 GATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCT 222114 |||||||| || | ||| ||||| | | || | ||| || ||| |||| ||| | Sbjct 5751730 TATCCACAGGGCGTAAAACAGATCGCGTGCGCGATTCTCTTCTTTGCCCGTGTTCTTCTT 5751789 Query 222115 CAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCC 222174 ||| |||| |||||||| | || | |||||| || |||| ||| | ||| | || || Sbjct 5751790 CAGTTCCAGGAACTCAAAGACATCCGAGTGCCAGGGTTCCAAATAAATGGCAAAGGCACC 5751849 Query 222175 GGGTCGCTTGTTGCCACCCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGT 222234 ||| |||||| ||| ||||||||||| | ||| | ||||||| | || | Sbjct 5751850 GGGACGCTTGCCGCCTCCCTGATCCACATAACGTGCCACATTATTGAAGACCCTCAGCAT 5751909 Query 222235 CGGTACCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAG 222294 || |||| || ||||| ||| || ||||| ||| | | || || | | Sbjct 5751910 GGGAACCAACCCATTGGAAGTACCATTTGTGCCGCAAATCGAGGTGCCCTTTGCACGAAT 5751969 Query 222295 GTTACTGGCAGACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAG 222354 | | | | ||||| ||||||||| || |||||||||||||| | | Sbjct 5751970 GCAATGCACGTTGAGTCCGATGCCACCGGCGGACTTGGAGATCATGGCGCATTGTTCCAC 5752029 Query 222355 AGTGTCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACAT 222414 || | | |||||||| || ||||| | | | | |||| || ||||| ||||||| Sbjct 5752030 AGACTTGAAAATGCCCTCGATGGAGTCGGCTGTCATGGTCAGAAGGAAACACGACGACAA 5752089 Query 222415 CTGAG---ATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCC 222471 ||| | || |||| | ||| |||||| ||||| || || || ||||||| Sbjct 5752090 CTGCGGCCGGTTTGTGGCA---GCGGCAAACAGTGTGGGCGATGCATGCGTGAAGTAGCG 5752146 Query 222472 CCTAGACATCAGATCGTACGTCTCTACG 222499 | |||| |||| || || || ||| Sbjct 5752147 CTCCGACAGAAGATTATAGGTTTCCACG 5752174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928673764840640