Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18]
14,731 sequences; 166,592,095 total letters
Query= NC_020104.1
Length=1021348
Score E
Sequences producing significant alignments: (Bits) Value
seq1558 152 3e-31
seq1555 120 2e-21
>seq1558
Length=21120651
Score = 152 bits (168), Expect = 3e-31
Identities = 368/548 (67%), Gaps = 8/548 (1%)
Strand=Plus/Minus
Query 474333 TTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTAG 474392
||||||||||||| || || || ||| || || | || | || |||| || || |
Sbjct 10881719 TTGGTATTGATTTGGGCACCACCTACTCGTGCGTGGGCGTGTTCCAGCATGGCAAGGTCG 10881660
Query 474393 AAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAA 474452
| || || ||||| ||||| |||||| | || || ||||| |||||| | || || || |
Sbjct 10881659 AGATCATCGCCAACGACCAGGGTAATCGTACCACTCCATCCTATGTTGCCTTCACCGATA 10881600
Query 474453 CTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACTA 474512
| || | ||| || |||||||| || || | || | || || || | || |
Sbjct 10881599 CGGAGCGTCTGATCGGAGATGCCGCCAAGAACCAGGTGGCGATGAACCCGACCCAGACGA 10881540
Query 474513 TTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATA 474572
| || || || || | ||||||||||| || || |||||| || | || || ||||| |
Sbjct 10881539 TCTTCGACGCCAAGCGCTTGATTGGTCGCAAGTTCGATGATGCCGCCGTGCAGTCTGACA 10881480
Query 474573 TGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAGCAA--T 474630
|| || ||||| || | ||| | | | | ||| || || | || || | | |
Sbjct 10881479 TGAAGCACTGGCCCTTCGATGTGGTCAGCGCCGATGGCAAGCCCAAGATCGAGGTGACCT 10881420
Query 474631 ACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAA 474690
||| | | | | || | || | ||| || || | || || || ||||| | ||||
Sbjct 10881419 ACAAGGACGAG-AAGAAGACCTTCTTC-CCCGAGGAGATCTCCTCGATGGTGCTCACCAA 10881362
Query 474691 AATGAAACAAACCG-CGAGCTCATATCTTGGACAAGA-AGTAACTGATGCAGTAATTACT 474748
||||| | |||| |||| | |||| ||| ||||| || || | || || || ||
Sbjct 10881361 GATGAAGGAGACCGCCGAG-GCCTATC-TGGGCAAGACTGTGACCAACGCTGTCATCACC 10881304
Query 474749 GTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCA 474808
|| || || || || || || ||||| ||||| || || || || || |||| || ||
Sbjct 10881303 GTGCCGGCCTACTTCAACGACTCTCAGCGTCAGGCGACCAAGGACGCCGGAACCATCGCC 10881244
Query 474809 GGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTT 474868
||||| ||||| | ||||| || || || || || || || || | ||||| |||||
Sbjct 10881243 GGTCTGAATGTGCTGCGTATCATCAACGAGCCCACTGCCGCTGCTATCGCTTACGGTCTG 10881184
Query 474869 GATAAGAA 474876
|| |||||
Sbjct 10881183 GACAAGAA 10881176
Score = 113 bits (124), Expect = 3e-19
Identities = 364/559 (65%), Gaps = 11/559 (2%)
Strand=Plus/Minus
Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388
|| ||||| || ||||| || || || ||| || || | || | ||| | || |||
Sbjct 20224299 GCCATTGGAATCGATTTGGGCACCACATACTCCTGCGTGGGAGTCTTCCAACACGGAAAA 20224240
Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448
|| || || |||||||| ||||| ||||| | || || ||||| || || | || ||
Sbjct 20224239 GTGGAGATCATTGCCAACGACCAGGGTAACCGTACCACTCCATCGTACGTGGCCTTCACC 20224180
Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAAT 474508
|| | |||| |||||||||||||| ||||| | || | || || || ||
Sbjct 20224179 GACTCGGAACGCCTTATTGGAGATGCCGCTAAGAACCAGGTGGCCATGAACCCCAGGAAC 20224120
Query 474509 ACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCT 474568
|| | || ||||| || | ||||||| ||| |||||| ||| ||| ||||
Sbjct 20224119 TCTGTGTTCGATGCCAAGCGTCTGATTGGGCGTCGTTTTGACGATTCCAAGATCCAGGAC 20224060
Query 474569 GATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAGC- 474627
|| || || ||||| || || ||||| || | | || || ||| | || ||||
Sbjct 20224059 GACATAAAACACTGGCCGTTCAAAGTGATCAACGATAACGGCAAGCCAAAGAT--AAGCG 20224002
Query 474628 ---AATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTT 474684
| | || | || | ||| || || || || | ||| || ||||| |
Sbjct 20224001 TTGAGTTCAAG--GGCGCGGATAAGTGTTTCTCTCCCGAGGAGATTAGCTCGATGGTACT 20223944
Query 474685 AGCCAAAATGAAACAAACCGCGAGCTCATATCTTGG-ACAAGAAGTAACTGATGCAGTAA 474743
|||||||||| |||| || | || || || || | ||| | || || || |
Sbjct 20223943 CACCAAAATGAAGGAAACTGCAGAAGCCTACCTGGGCACTA-CAGTGAAGGACGCTGTCA 20223885
Query 474744 TTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAA 474803
| ||||| || || || || || || || || || || ||||| || ||||| || ||
Sbjct 20223884 TCACTGTGCCGGCCTACTTCAACGACTCCCAGCGCCAGGCAACAAAGGATGCCGGTGCAA 20223825
Query 474804 TTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATG 474863
| || || | ||||| | || || || || || |||||||| || || || || || |
Sbjct 20223824 TCGCTGGCATCAATGTGCTCCGCATCATCAACGAGCCAACAGCGGCGGCTCTGGCCTACG 20223765
Query 474864 GTCTTGATAAGAATTCTGA 474882
| || || ||||| |||||
Sbjct 20223764 GCCTGGACAAGAA-TCTGA 20223747
>seq1555
Length=7220098
Score = 120 bits (132), Expect = 2e-21
Identities = 132/176 (75%), Gaps = 0/176 (0%)
Strand=Plus/Minus
Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653
||||| |||| || || | | |||||| || ||||| ||||| || || ||||| ||
Sbjct 5837896 TTATAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGC 5837837
Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713
||||| |||||||||||||| ||||| |||||||| ||||||| ||| ||||||||
Sbjct 5837836 TGATCTGGAGGAATTCCTTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTATCC 5837777
Query 480714 GTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
| || ||||| || || || || || ||||| ||||||||||| || ||
Sbjct 5837776 GACGGTTCGACCTCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTG 5837721
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3267547315935188
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |