Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18] 14,731 sequences; 166,592,095 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq1558 152 3e-31 seq1555 120 2e-21 >seq1558 Length=21120651 Score = 152 bits (168), Expect = 3e-31 Identities = 368/548 (67%), Gaps = 8/548 (1%) Strand=Plus/Minus Query 474333 TTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTAG 474392 ||||||||||||| || || || ||| || || | || | || |||| || || | Sbjct 10881719 TTGGTATTGATTTGGGCACCACCTACTCGTGCGTGGGCGTGTTCCAGCATGGCAAGGTCG 10881660 Query 474393 AAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAA 474452 | || || ||||| ||||| |||||| | || || ||||| |||||| | || || || | Sbjct 10881659 AGATCATCGCCAACGACCAGGGTAATCGTACCACTCCATCCTATGTTGCCTTCACCGATA 10881600 Query 474453 CTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACTA 474512 | || | ||| || |||||||| || || | || | || || || | || | Sbjct 10881599 CGGAGCGTCTGATCGGAGATGCCGCCAAGAACCAGGTGGCGATGAACCCGACCCAGACGA 10881540 Query 474513 TTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATA 474572 | || || || || | ||||||||||| || || |||||| || | || || ||||| | Sbjct 10881539 TCTTCGACGCCAAGCGCTTGATTGGTCGCAAGTTCGATGATGCCGCCGTGCAGTCTGACA 10881480 Query 474573 TGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAGCAA--T 474630 || || ||||| || | ||| | | | | ||| || || | || || | | | Sbjct 10881479 TGAAGCACTGGCCCTTCGATGTGGTCAGCGCCGATGGCAAGCCCAAGATCGAGGTGACCT 10881420 Query 474631 ACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAA 474690 ||| | | | | || | || | ||| || || | || || || ||||| | |||| Sbjct 10881419 ACAAGGACGAG-AAGAAGACCTTCTTC-CCCGAGGAGATCTCCTCGATGGTGCTCACCAA 10881362 Query 474691 AATGAAACAAACCG-CGAGCTCATATCTTGGACAAGA-AGTAACTGATGCAGTAATTACT 474748 ||||| | |||| |||| | |||| ||| ||||| || || | || || || || Sbjct 10881361 GATGAAGGAGACCGCCGAG-GCCTATC-TGGGCAAGACTGTGACCAACGCTGTCATCACC 10881304 Query 474749 GTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCA 474808 || || || || || || || ||||| ||||| || || || || || |||| || || Sbjct 10881303 GTGCCGGCCTACTTCAACGACTCTCAGCGTCAGGCGACCAAGGACGCCGGAACCATCGCC 10881244 Query 474809 GGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTT 474868 ||||| ||||| | ||||| || || || || || || || || | ||||| ||||| Sbjct 10881243 GGTCTGAATGTGCTGCGTATCATCAACGAGCCCACTGCCGCTGCTATCGCTTACGGTCTG 10881184 Query 474869 GATAAGAA 474876 || ||||| Sbjct 10881183 GACAAGAA 10881176 Score = 113 bits (124), Expect = 3e-19 Identities = 364/559 (65%), Gaps = 11/559 (2%) Strand=Plus/Minus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388 || ||||| || ||||| || || || ||| || || | || | ||| | || ||| Sbjct 20224299 GCCATTGGAATCGATTTGGGCACCACATACTCCTGCGTGGGAGTCTTCCAACACGGAAAA 20224240 Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 || || || |||||||| ||||| ||||| | || || ||||| || || | || || Sbjct 20224239 GTGGAGATCATTGCCAACGACCAGGGTAACCGTACCACTCCATCGTACGTGGCCTTCACC 20224180 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAAT 474508 || | |||| |||||||||||||| ||||| | || | || || || || Sbjct 20224179 GACTCGGAACGCCTTATTGGAGATGCCGCTAAGAACCAGGTGGCCATGAACCCCAGGAAC 20224120 Query 474509 ACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCT 474568 || | || ||||| || | ||||||| ||| |||||| ||| ||| |||| Sbjct 20224119 TCTGTGTTCGATGCCAAGCGTCTGATTGGGCGTCGTTTTGACGATTCCAAGATCCAGGAC 20224060 Query 474569 GATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAGC- 474627 || || || ||||| || || ||||| || | | || || ||| | || |||| Sbjct 20224059 GACATAAAACACTGGCCGTTCAAAGTGATCAACGATAACGGCAAGCCAAAGAT--AAGCG 20224002 Query 474628 ---AATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTT 474684 | | || | || | ||| || || || || | ||| || ||||| | Sbjct 20224001 TTGAGTTCAAG--GGCGCGGATAAGTGTTTCTCTCCCGAGGAGATTAGCTCGATGGTACT 20223944 Query 474685 AGCCAAAATGAAACAAACCGCGAGCTCATATCTTGG-ACAAGAAGTAACTGATGCAGTAA 474743 |||||||||| |||| || | || || || || | ||| | || || || | Sbjct 20223943 CACCAAAATGAAGGAAACTGCAGAAGCCTACCTGGGCACTA-CAGTGAAGGACGCTGTCA 20223885 Query 474744 TTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAA 474803 | ||||| || || || || || || || || || || ||||| || ||||| || || Sbjct 20223884 TCACTGTGCCGGCCTACTTCAACGACTCCCAGCGCCAGGCAACAAAGGATGCCGGTGCAA 20223825 Query 474804 TTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATG 474863 | || || | ||||| | || || || || || |||||||| || || || || || | Sbjct 20223824 TCGCTGGCATCAATGTGCTCCGCATCATCAACGAGCCAACAGCGGCGGCTCTGGCCTACG 20223765 Query 474864 GTCTTGATAAGAATTCTGA 474882 | || || ||||| ||||| Sbjct 20223764 GCCTGGACAAGAA-TCTGA 20223747 >seq1555 Length=7220098 Score = 120 bits (132), Expect = 2e-21 Identities = 132/176 (75%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 ||||| |||| || || | | |||||| || ||||| ||||| || || ||||| || Sbjct 5837896 TTATAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGC 5837837 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 ||||| |||||||||||||| ||||| |||||||| ||||||| ||| |||||||| Sbjct 5837836 TGATCTGGAGGAATTCCTTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTATCC 5837777 Query 480714 GTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || ||||| || || || || || ||||| ||||||||||| || || Sbjct 5837776 GACGGTTCGACCTCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTG 5837721 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267547315935188