Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18] 14,731 sequences; 166,592,095 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq1555 167 3e-36 seq1551 109 7e-19 >seq1555 Length=7220098 Score = 167 bits (184), Expect = 3e-36 Identities = 634/987 (64%), Gaps = 15/987 (2%) Strand=Plus/Minus Query 75608 TACTTGGAACCATGGCATGCCGATATCATGGAGTTCCTTGAGTT-ACGACTCAACCAAGG 75666 || |||||||| ||||| | ||| || | |||||||| || | | || ||| || Sbjct 5751834 TATTTGGAACCCTGGCACTCGGATGTCTTTGAGTTCCTGGAACTGAAGAAG-AACACGGG 5751776 Query 75667 TGACGAAGAGGCTCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCAT 75726 | |||||| ||| | ||||| |||| |||||||||| || || || ||||| Sbjct 5751775 CAAAGAAGAGAATCGCGCACGCGATCTGTTTTACGCCCTGTGGATACCCGATCTCTTCAT 5751716 Query 75727 GAAGCGGGTTGAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCT 75786 ||| || ||||||| ||| | ||||| || | || || ||||| || ||||| Sbjct 5751715 GAAACGCGTTGAGGCCAACGGTGATTGGTCGCTCATGTGCCCCCACAAGTGTCCTGGTCT 5751656 Query 75787 CTCCGACGCGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAG 75846 | ||| | | ||| || || || ||| || ||| || || || | |||||| | Sbjct 5751655 CCACGAAGTGTGGGGCGATGAATTCGAAAAGCTGTACGAGAAATACGAGCAAGAGGGTCG 5751596 Query 75847 AGCCAATGCGACTGTACCAGCCGCCGATG--TTTGGAAGGCTATTCTCAAATCACAGACG 75904 ||||| || || || | || | ||| || || | | | || | Sbjct 5751595 GGCCAACCGAACGGTTAAGGCT--CAATCCCTGTGGTTTGCCATCATTGAGGCGCAAGTG 5751538 Query 75905 GAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAG 75964 ||||| |||| || || ||||| | |||||| ||||| |||| |||||| ||||| || Sbjct 5751537 GAGACCGGAAATCCGTACATGCTCTTCAAGGACGCTTGCAACAGGAAGAGCAACCAGCAG 5751478 Query 75965 AATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAG 76024 ||| |||| || |||||| || || | ||||||||||| | || || | | Sbjct 5751477 AATGTGGGCACCATCAAGTGCAGCAACTTGTGCACGGAAATCGTTGAATATTCCTCACCG 5751418 Query 76025 GATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAG 76084 ||||||| || || ||||| ||||| || |||||||| | || |||| ||| Sbjct 5751417 GATGAGATTGCAGTCTGCAACTTGGCCTCCATCGCCCTCAACATGTTCGTCACGCCGGAG 5751358 Query 76085 ACTCGCACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTA 76144 | || | ||||| | | || || | ||| |||| ||||| ||||||||||||||| Sbjct 5751357 A---AGACGTATGATTTTAAGAAGCTCAAGGAAGTCACCAAGATAGTTACCAAAAATCTA 5751301 Query 76145 AACCGAGTCATTGACAGAAATTTTTATCCCGTTGAGACTGCGCGAAAGTCTAATATGCGA 76204 ||| | ||||| | || | ||||||| | | || | ||||| ||| || | Sbjct 5751300 AACAAGATAATTGATATCAACTATTATCCCCTGCCGGAGGCAAGGAAGTCCAATTTGAGG 5751241 Query 76205 CACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTAC 76264 ||| | || | || | ||| |||| || |||| |||| || ||| | || | | Sbjct 5751240 CACCGTCCCGTGGGCATTGGTATTCAGGGATTCGCTGATGCCTTGATTCTCATGCGTTTC 5751181 Query 76265 GCATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCAC 76324 | | || || |||||| ||||| | || || |||||||| || | Sbjct 5751180 CCGTACGAAAGCGAAGAAGCCGGTCTTTTGAATCAGCAGATATTCGAAACCATTTACTAT 5751121 Query 76325 GCATCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAG 76384 | || |||| || || || ||| |||| | || ||||| | || || || | ||| Sbjct 5751120 GGCGCCTTGGAAGCCAGCTGCGAACTGGCCCAGACCGAAGGTGCATACGAAACCTACGAG 5751061 Query 76385 GGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGG--AAGGTG-AAACCAAG 76441 || || | | | |||| | | |||| || ||||||| |||||| ||| || Sbjct 5751060 GGCAGCCCGGTGAGCAAAGGAATTTTGCAGTACGACATGTGGGACAAGGTGCCAACGAAC 5751001 Query 76442 CTCAACTACGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGT 76501 || | |||||| | | ||||| ||| ||| || | ||| | || ||| Sbjct 5751000 CT---GTGGGACTGGCAGAAATTGAAGGAGTCCATTAAGAAGCACGGTGTCCGGAACTCC 5750944 Query 76502 CTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGC 76561 || | | || || ||||| || || || || || || || |||| || ||||||| | Sbjct 5750943 CTGCTCGTTGCTCCCATGCCCACTGCATCTACGGCTCAGATAATGGGCAACAATGAATCC 5750884 Query 76562 TTTGAACCATACACAACAAACATCTAC 76588 || || || ||||| || ||||| ||| Sbjct 5750883 TTCGAGCCCTACACCACGAACATATAC 5750857 >seq1551 Length=3727775 Score = 109 bits (120), Expect = 7e-19 Identities = 202/291 (69%), Gaps = 4/291 (1%) Strand=Plus/Minus Query 14340 AGCGCTCTATTGCCCATATGGCGGATGGTCTCAAGCCTTCACAGAGGAAAGTGATGTATG 14399 ||||||| ||| | | ||| |||||| | ||||| ||| |||| ||||||| Sbjct 3065556 AGCGCTCCATTCCTAGTCTGGTGGATGGCTTGAAGCCGGGTCAGCGGAAGGTGATGTTCA 3065497 Query 14400 CTTGCTTCCATAAGAATCTCAAGGATGAAATGAAGGTGGCACAACTGGCGGCATATGTCG 14459 |||| ||| | | |||| |||| ||| |||||||||| || || | | || || | Sbjct 3065496 CTTGTTTCAAAAGGAATGACAAGCGTGAGGTGAAGGTGGCCCAGCTATCCGGATCAGTGG 3065437 Query 14460 CGGACAAGTCTGCGTACCACCATGGTGAAGTATCCTTAGCGGAC-ACGATTGTTAAGTTG 14518 |||| | ||| || |||||||| || || |||||| | || || || || || || || Sbjct 3065436 CGGAGATGTCGGCCTACCACCACGGAGAGGTATCCCT-GCAGATGACAATCGTAAATCTG 3065378 Query 14519 GCAAACGACTACACGGGTTCAAACAACATTAACCTTCTTGAACCGTGTGGTCAATTTGGT 14578 || | | | |||| | ||||||||||| || ||||| || | |||||||||||| Sbjct 3065377 GCCCAGAATTTTGTGGGTGCGAACAACATTAATCTGCTTGAGCCACGCGGTCAATTTGGT 3065318 Query 14579 ACGCGTCTCATGGGTGGTAAGGATGCTTCTCAG-ACGAGGTACATTTTCAC 14628 || || | | ||| || || ||| | | ||| | | ||||||||||| Sbjct 3065317 ACCCGCTTGACGGGAGGCAAAGATTGTGC-CAGCGCTCGTTACATTTTCAC 3065268 Score = 87.8 bits (96), Expect = 2e-12 Identities = 143/203 (70%), Gaps = 5/203 (2%) Strand=Plus/Minus Query 13534 TCGCAAGTC---CAAAATTACCGGTATTCCCAAGTTGGATGACGCGAACAAGGCGGGTAC 13590 ||||||||| ||| || | || ||||||||| |||| ||||| ||| |||||||| Sbjct 3066404 TCGCAAGTCAAGCAAGATCAAGGGCATTCCCAAGCTGGAAGACGCTAACGAGGCGGGTG- 3066346 Query 13591 GGCACAA-TCTGGAAAGTGTACTCTCATTGTCACAGAGGGTGATTCGGCTAAAACCCTCG 13649 | | || ||| || || || ||||| |||| ||||| || || || || | | | Sbjct 3066345 GAAAGAACTCTATTAATTGCACCCTCATCCTCACGGAGGGAGACTCAGCCAAGTCATTAG 3066286 Query 13650 CGGTTGCGGGTCTCTCTGTCGTTGGTCGTGATCACTACGGTGTGTTCCCACTTCGCGGTA 13709 | || | ||||| || | || || ||||||||||| |||||||| ||| | |||| Sbjct 3066285 CCGTATCTGGTCTGGGCGTGATCGGACGAGATCACTACGGCGTGTTCCCGCTTAGGGGTA 3066226 Query 13710 AATGTAAGAATGTTCGGGACGCT 13732 || | ||||| ||||| ||| Sbjct 3066225 AACTTCTAAATGTGCGGGAAGCT 3066203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596459749165280