Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18]
14,731 sequences; 166,592,095 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq1522 127 6e-24
seq1558 102 2e-16
seq1557 98.7 3e-15
seq1555 93.3 1e-13
>seq1522
Length=449511
Score = 127 bits (140), Expect = 6e-24
Identities = 184/260 (71%), Gaps = 0/260 (0%)
Strand=Plus/Plus
Query 302575 TCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTA 302634
|||||| ||| || | ||||||||| || ||||| ||| || ||| |||||||| |||
Sbjct 174249 TCCATAGCCTTTATAAGACGACGCTGGATGTAACCGGTTTCAGCTGTCTTTACAGCAGTA 174308
Query 302635 TCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCC 302694
|| || ||||| ||||||||||||| || ||||| | | ||| ||| || ||
Sbjct 174309 TCGATAAGACCCTCACGACCACCCATGGCGTGGAAATAGAACTCAGAGGGTGTCAGGCCG 174368
Query 302695 CCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAG 302754
||| | | || |||| |||||||| |||| ||| || || ||| ||| |||||
Sbjct 174369 GCAAGATACGAATTCTCCACGAAACCGCGCGACTCAGGACCATAATCGTCCTTAATAAAG 174428
Query 302755 TGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGT 302814
|| || || || | || | ||||| ||||| ||||| || || |||||||| ||
Sbjct 174429 TGGGGAAGAGTGCGCTTGCGGAAACCGTAGGGGATTCGCTTACCCTCCACGTTCTGTTGA 174488
Query 302815 CCCAGGCACGAAATCATCTG 302834
|||| || | ||| | |||
Sbjct 174489 CCCACACAAGCAATAACCTG 174508
>seq1558
Length=21120651
Score = 102 bits (112), Expect = 2e-16
Identities = 147/202 (73%), Gaps = 4/202 (2%)
Strand=Plus/Plus
Query 251845 ATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGTCCATCA 251904
|| ||||||||| || ||||| ||||| ||||||||||| |||||| || || ||
Sbjct 12061551 ATTGTCATACGAGATGGGATAGCGTGGGGGTTGATGATGATATCGGGTGCCAAGCCCTC- 12061609
Query 251905 GCAG-TGAAGGGCATATCCTTTTCCTCAATAATGT-TTCCAATAGTTCCCTTTTGTCCGT 251962
|||| |||||| |||||| | || | ||| || |||| ||||||||||||||||
Sbjct 12061610 GCAGGTGAAGGCCATATCTTCTTGA-CGATACTGAATTCCGCACGTTCCCTTTTGTCCGT 12061668
Query 251963 GACGAGAACTGAACTTATCACCAATAACAGGACGGCGAACACTACGAAGGCGAACCTTAC 252022
|||||||| |||||| || || || ||| || ||| || | |||| ||| |
Sbjct 12061669 GACGAGAAGCGAACTTGTCGCCGATCTGGGGAATACGCACAGAGCGCACTCGAATCTTGC 12061728
Query 252023 AGAAGTTGTAACCATCACCGTT 252044
|||| ||||| || || | |||
Sbjct 12061729 AGAACTTGTAGCCCTCGCTGTT 12061750
>seq1557
Length=14215200
Score = 98.7 bits (108), Expect = 3e-15
Identities = 122/167 (73%), Gaps = 0/167 (0%)
Strand=Plus/Minus
Query 251485 GCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGA 251544
|| |||| ||||| | |||||||||||||||||||| | |||||| ||||| ||||||
Sbjct 5479807 GCTCCGTAAGAAATGAGGCAATCACGCTCCATTTCACCCAGACGAAGGCCACCCTCGCGA 5479748
Query 251545 GCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATGT 251604
||| |||| | |||||||| ||||| | || |||| || || |||| |||
Sbjct 5479747 CTCCTGCCCTGCGTCGGCTGACGGGTGAGCACAGCCTTAGGTCCTCGGGCGCGGGCATGC 5479688
Query 251605 TGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACC 251651
|||||| | ||||| ||||| || ||||||| | |||| ||
Sbjct 5479687 ATCTTATCCTGCACCATGTGCTTCAGTTTCTGGTAGTACACGGGTCC 5479641
>seq1555
Length=7220098
Score = 93.3 bits (102), Expect = 1e-13
Identities = 590/941 (63%), Gaps = 21/941 (2%)
Strand=Plus/Plus
Query 155406 TCGGCTAAACCCTGAACTCCAATACCGACTGGGCGATGCCTGTAATTGCTCCTGCTTGTC 155465
|| || || ||||||| ||||| || || || || ||||| ||||| | | |||| |
Sbjct 5751203 TCAGCGAATCCCTGAATACCAATGCCCACGGGACGGTGCCTCAAATTGGACTTCCTTGCC 5751262
Query 155466 TTCTTGTTTGGGTAAAAATTCACATCAATAATGTTATTTAAATTT---GTAACCAATACC 155522
| | || ||| | || | |||||| || || |||| |||| ||||| || |
Sbjct 5751263 TCCGGCAGGGGATAATAGTTGATATCAATTATCTTGTTTAGATTTTTGGTAAC---TATC 5751319
Query 155523 TTGGTTACGTCTGCTAATTTCACATAGTCAAATGTTTTATCCTCATTTACAAACATACCA 155582
||||| || || | ||| | | ||| | || || ||| | || |||||
Sbjct 5751320 TTGGTGACTTCCTTGAGCTTCTTAAAATCATACGTCTTCTCCGGCGTGACGAACATGTTG 5751379
Query 155583 AGACCAATAGACGCCAGATTACATACCGCAGTCTCCTTGTCGTCGCTG--TATTCTACAA 155640
|| | || || |||| || || || ||| |||| | || | | ||||| || |
Sbjct 5751380 AGGGCGATGGAGGCCAAGTTGCAGACTGCAATCTCATC--CGGTGAGGAATATTCAACGA 5751437
Query 155641 TCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGT 155700
| || ||||| ||| | |||||||||||| | ||||| |||||| || ||||
Sbjct 5751438 TTTCCGTGCACAAGTTGCTGCACTTGATGGTGCCCACATTCTGCTGGTTGCTCTTCCTGT 5751497
Query 155701 TACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCT 155760
| ||||| |||||| | || ||||| || |||| ||||||| || || || | ||
Sbjct 5751498 TGCAAGCGTCCTTGAAGAGCATGTACGGATTTCCGGTCTCCACTTGCGCCTCAATGATGG 5751557
Query 155761 TTAGCCAGAGGTCACGGGCATTAA---TTTGCTTGTTGTATCTGCCTTCCGACTCATATT 155817
| ||| ||| | || |||| || | |||| | || || ||| ||||
Sbjct 5751558 CAAACCACAGGGATTGAGCCTTAACCGTTCG---GTTGGCCCGACCCTCTTGCTCGTATT 5751614
Query 155818 TCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGG 155877
|| |||||| || | | || || || | || || ||||| ||||| | ||
Sbjct 5751615 TCTCGTACAGCTTTTCGAATTCATCGCCCCACACTTCGTGGAGACCAGGACACTTGTGGG 5751674
Query 155878 GGCAAAACAGCGACCAAATTTTATTACCGATTACACGCTCCATAAATACATCACTCGCCC 155937
|||| | ||||||||| || | || || | ||| || | ||| ||
Sbjct 5751675 GGCACATGAGCGACCAATCACCGTTGGCCTCAACGCGTTTCATGAAGAGATCGGGTATCC 5751734
Query 155938 AAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCG-CCGTGATTCTTCCGTAGC 155996
| | || || || || || | ||| ||| || | | ||||| |||||| ||
Sbjct 5751735 ACAGGGCGTAAAACAGATCGCGTGCGCGATTCTCTTCTTTGCCCGTG-TTCTTCTTCAGT 5751793
Query 155997 TCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTC 156056
|| | ||| || | ||| | || || |||| ||| || ||||| |||
Sbjct 5751794 TCCAGGAACTCAAAGACATCCGAGTGCCAGGGTTCCAAATAAATGGCAAAGGCACCGGGA 5751853
Query 156057 CTCTT---GCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGA 156113
| ||| ||| |||||||| ||||| || || ||||||||||| | ||||| |||
Sbjct 5751854 CGCTTGCCGCCTCCCTGATCCACATAACGTGCCACATTATTGAAGACCCTCAGCATGGGA 5751913
Query 156114 ATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTA 156173
| | ||||||||||| ||||| || |||| ||| | || || |||| |
Sbjct 5751914 ACCAACCCATTGGAAGTACCATTTGTGCCGCAAATCGAGGTGCCCTTTGCACGAATGCAA 5751973
Query 156174 TGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTA 156233
|| | | ||||| || ||||| | | || || || ||||||| | ||||
Sbjct 5751974 TGCACGTTGAGTCCGATGCCACCGGCGGACTTGGAGATCATGGCGCATTGTTCCACAGAC 5752033
Query 156234 TTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGA 156293
|||||||| || || || || || || ||| | || || | ||||| || ||
Sbjct 5752034 TTGAAAATGCCCTCGATGGAGTCGGCTGTCATGGTCAGAAGGAAACACGACGACAACTGC 5752093
Query 156294 GGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATG 156334
|| || ||| ||||| || ||||| || | ||||||
Sbjct 5752094 GGCCGGTTTGTGGCAGCGGCAAACAGTGTGGGCGATGCATG 5752134
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471539807766347
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |