Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18] 14,731 sequences; 166,592,095 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1522 127 6e-24 seq1558 102 2e-16 seq1557 98.7 3e-15 seq1555 93.3 1e-13 >seq1522 Length=449511 Score = 127 bits (140), Expect = 6e-24 Identities = 184/260 (71%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 302575 TCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTA 302634 |||||| ||| || | ||||||||| || ||||| ||| || ||| |||||||| ||| Sbjct 174249 TCCATAGCCTTTATAAGACGACGCTGGATGTAACCGGTTTCAGCTGTCTTTACAGCAGTA 174308 Query 302635 TCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCC 302694 || || ||||| ||||||||||||| || ||||| | | ||| ||| || || Sbjct 174309 TCGATAAGACCCTCACGACCACCCATGGCGTGGAAATAGAACTCAGAGGGTGTCAGGCCG 174368 Query 302695 CCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAG 302754 ||| | | || |||| |||||||| |||| ||| || || ||| ||| ||||| Sbjct 174369 GCAAGATACGAATTCTCCACGAAACCGCGCGACTCAGGACCATAATCGTCCTTAATAAAG 174428 Query 302755 TGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGT 302814 || || || || | || | ||||| ||||| ||||| || || |||||||| || Sbjct 174429 TGGGGAAGAGTGCGCTTGCGGAAACCGTAGGGGATTCGCTTACCCTCCACGTTCTGTTGA 174488 Query 302815 CCCAGGCACGAAATCATCTG 302834 |||| || | ||| | ||| Sbjct 174489 CCCACACAAGCAATAACCTG 174508 >seq1558 Length=21120651 Score = 102 bits (112), Expect = 2e-16 Identities = 147/202 (73%), Gaps = 4/202 (2%) Strand=Plus/Plus Query 251845 ATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGTCCATCA 251904 || ||||||||| || ||||| ||||| ||||||||||| |||||| || || || Sbjct 12061551 ATTGTCATACGAGATGGGATAGCGTGGGGGTTGATGATGATATCGGGTGCCAAGCCCTC- 12061609 Query 251905 GCAG-TGAAGGGCATATCCTTTTCCTCAATAATGT-TTCCAATAGTTCCCTTTTGTCCGT 251962 |||| |||||| |||||| | || | ||| || |||| |||||||||||||||| Sbjct 12061610 GCAGGTGAAGGCCATATCTTCTTGA-CGATACTGAATTCCGCACGTTCCCTTTTGTCCGT 12061668 Query 251963 GACGAGAACTGAACTTATCACCAATAACAGGACGGCGAACACTACGAAGGCGAACCTTAC 252022 |||||||| |||||| || || || ||| || ||| || | |||| ||| | Sbjct 12061669 GACGAGAAGCGAACTTGTCGCCGATCTGGGGAATACGCACAGAGCGCACTCGAATCTTGC 12061728 Query 252023 AGAAGTTGTAACCATCACCGTT 252044 |||| ||||| || || | ||| Sbjct 12061729 AGAACTTGTAGCCCTCGCTGTT 12061750 >seq1557 Length=14215200 Score = 98.7 bits (108), Expect = 3e-15 Identities = 122/167 (73%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 251485 GCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGA 251544 || |||| ||||| | |||||||||||||||||||| | |||||| ||||| |||||| Sbjct 5479807 GCTCCGTAAGAAATGAGGCAATCACGCTCCATTTCACCCAGACGAAGGCCACCCTCGCGA 5479748 Query 251545 GCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATGT 251604 ||| |||| | |||||||| ||||| | || |||| || || |||| ||| Sbjct 5479747 CTCCTGCCCTGCGTCGGCTGACGGGTGAGCACAGCCTTAGGTCCTCGGGCGCGGGCATGC 5479688 Query 251605 TGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACC 251651 |||||| | ||||| ||||| || ||||||| | |||| || Sbjct 5479687 ATCTTATCCTGCACCATGTGCTTCAGTTTCTGGTAGTACACGGGTCC 5479641 >seq1555 Length=7220098 Score = 93.3 bits (102), Expect = 1e-13 Identities = 590/941 (63%), Gaps = 21/941 (2%) Strand=Plus/Plus Query 155406 TCGGCTAAACCCTGAACTCCAATACCGACTGGGCGATGCCTGTAATTGCTCCTGCTTGTC 155465 || || || ||||||| ||||| || || || || ||||| ||||| | | |||| | Sbjct 5751203 TCAGCGAATCCCTGAATACCAATGCCCACGGGACGGTGCCTCAAATTGGACTTCCTTGCC 5751262 Query 155466 TTCTTGTTTGGGTAAAAATTCACATCAATAATGTTATTTAAATTT---GTAACCAATACC 155522 | | || ||| | || | |||||| || || |||| |||| ||||| || | Sbjct 5751263 TCCGGCAGGGGATAATAGTTGATATCAATTATCTTGTTTAGATTTTTGGTAAC---TATC 5751319 Query 155523 TTGGTTACGTCTGCTAATTTCACATAGTCAAATGTTTTATCCTCATTTACAAACATACCA 155582 ||||| || || | ||| | | ||| | || || ||| | || ||||| Sbjct 5751320 TTGGTGACTTCCTTGAGCTTCTTAAAATCATACGTCTTCTCCGGCGTGACGAACATGTTG 5751379 Query 155583 AGACCAATAGACGCCAGATTACATACCGCAGTCTCCTTGTCGTCGCTG--TATTCTACAA 155640 || | || || |||| || || || ||| |||| | || | | ||||| || | Sbjct 5751380 AGGGCGATGGAGGCCAAGTTGCAGACTGCAATCTCATC--CGGTGAGGAATATTCAACGA 5751437 Query 155641 TCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGT 155700 | || ||||| ||| | |||||||||||| | ||||| |||||| || |||| Sbjct 5751438 TTTCCGTGCACAAGTTGCTGCACTTGATGGTGCCCACATTCTGCTGGTTGCTCTTCCTGT 5751497 Query 155701 TACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCT 155760 | ||||| |||||| | || ||||| || |||| ||||||| || || || | || Sbjct 5751498 TGCAAGCGTCCTTGAAGAGCATGTACGGATTTCCGGTCTCCACTTGCGCCTCAATGATGG 5751557 Query 155761 TTAGCCAGAGGTCACGGGCATTAA---TTTGCTTGTTGTATCTGCCTTCCGACTCATATT 155817 | ||| ||| | || |||| || | |||| | || || ||| |||| Sbjct 5751558 CAAACCACAGGGATTGAGCCTTAACCGTTCG---GTTGGCCCGACCCTCTTGCTCGTATT 5751614 Query 155818 TCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGG 155877 || |||||| || | | || || || | || || ||||| ||||| | || Sbjct 5751615 TCTCGTACAGCTTTTCGAATTCATCGCCCCACACTTCGTGGAGACCAGGACACTTGTGGG 5751674 Query 155878 GGCAAAACAGCGACCAAATTTTATTACCGATTACACGCTCCATAAATACATCACTCGCCC 155937 |||| | ||||||||| || | || || | ||| || | ||| || Sbjct 5751675 GGCACATGAGCGACCAATCACCGTTGGCCTCAACGCGTTTCATGAAGAGATCGGGTATCC 5751734 Query 155938 AAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCG-CCGTGATTCTTCCGTAGC 155996 | | || || || || || | ||| ||| || | | ||||| |||||| || Sbjct 5751735 ACAGGGCGTAAAACAGATCGCGTGCGCGATTCTCTTCTTTGCCCGTG-TTCTTCTTCAGT 5751793 Query 155997 TCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTC 156056 || | ||| || | ||| | || || |||| ||| || ||||| ||| Sbjct 5751794 TCCAGGAACTCAAAGACATCCGAGTGCCAGGGTTCCAAATAAATGGCAAAGGCACCGGGA 5751853 Query 156057 CTCTT---GCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGA 156113 | ||| ||| |||||||| ||||| || || ||||||||||| | ||||| ||| Sbjct 5751854 CGCTTGCCGCCTCCCTGATCCACATAACGTGCCACATTATTGAAGACCCTCAGCATGGGA 5751913 Query 156114 ATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTA 156173 | | ||||||||||| ||||| || |||| ||| | || || |||| | Sbjct 5751914 ACCAACCCATTGGAAGTACCATTTGTGCCGCAAATCGAGGTGCCCTTTGCACGAATGCAA 5751973 Query 156174 TGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTA 156233 || | | ||||| || ||||| | | || || || ||||||| | |||| Sbjct 5751974 TGCACGTTGAGTCCGATGCCACCGGCGGACTTGGAGATCATGGCGCATTGTTCCACAGAC 5752033 Query 156234 TTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGA 156293 |||||||| || || || || || || ||| | || || | ||||| || || Sbjct 5752034 TTGAAAATGCCCTCGATGGAGTCGGCTGTCATGGTCAGAAGGAAACACGACGACAACTGC 5752093 Query 156294 GGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATG 156334 || || ||| ||||| || ||||| || | |||||| Sbjct 5752094 GGCCGGTTTGTGGCAGCGGCAAACAGTGTGGGCGATGCATG 5752134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471539807766347