Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18] 14,731 sequences; 166,592,095 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq1557 129 7e-24 seq1556 111 2e-18 seq1558 107 2e-17 seq1548 98.7 1e-14 seq1549 86.0 8e-11 >seq1557 Length=14215200 Score = 129 bits (142), Expect = 7e-24 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 1592106 AGAAGCGCACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCA 1592165 |||||||||| || |||||||| | |||||| || ||| | | || || ||| || Sbjct 5572335 AGAAGCGCACGGATGACATCTCATCCTGGGACGCTGACTTTCTCAAAGTGGACCAGGGCA 5572276 Query 1592166 CCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTG 1592225 | || || || |||||||||| ||||||||||| | ||| || | ||||||| | Sbjct 5572275 CGCTGTTCGAACTGATCCTCGCGGCCAACTACCTGAATATCCAGGGTTTGCTCGACGTCA 5572216 Query 1592226 GGTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCT 1592285 |||||| | |||||||| |||||||||||||||||||| |||| || ||| | |||| Sbjct 5572215 CCTGCAAGACGGTGGCCAATATGATCAAGGGCAAGTCGCCGCAGGACATTCGCGACACCT 5572156 Query 1592286 TTAACATCAAG 1592296 | ||||||| Sbjct 5572155 TCGCCATCAAG 5572145 Score = 123 bits (136), Expect = 3e-22 Identities = 170/236 (72%), Gaps = 4/236 (2%) Strand=Plus/Plus Query 869631 CCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTT 869690 ||||||| | |||||| |||||||||||||||||||| ||| | |||| | | | Sbjct 5422254 CCGAGTGCACGTTCTCCATGGCGATCTGGAAGCCGTAGAAGCATCGTGCCTCCGTGATCT 5422313 Query 869691 GGACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGA 869750 | ||||||| |||| || | ||||||||||| |||||||| || |||||||| Sbjct 5422314 GCACCTCCTGACTGAAGCGCTCCACCAGGTTCTCGTTTACGATGCCATCAGAGGCGGCGA 5422373 Query 869751 AAAAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGT--G 869808 | || ||||| |||||| ||| || |||||||||||||| | || ||||| | Sbjct 5422374 AGAAGGCCAGCACGTGCGAGATGAAATGGCGCTCGTCGTCCTTCAGGCGGTGCCAGTCAG 5422433 Query 869809 GACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCT 869864 | | ||| | | |||||||||||| ||||||||| || ||||| |||| Sbjct 5422434 TAAG--GTCCTTGGACAAATCCACCTCCTCGACGGTCCAGAAAGAAGCCTCAGCCT 5422487 Score = 114 bits (126), Expect = 2e-19 Identities = 162/227 (71%), Gaps = 7/227 (3%) Strand=Plus/Plus Query 869174 TGCGAACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCG 869233 ||| | || ||||||||| ||||| |||||| |||| | || ||||| || ||| Sbjct 5421968 TGCAAGCCCTCGTCGCGAGAGATCAGCTCGTTGGAGAAGGTCAATCCAGGCATCAGACCG 5422027 Query 869234 CGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCG 869293 |||||||| ||||| || |||| | ||| ||||| ||| || |||||||| |||||| Sbjct 5422028 CGCTTCTTAAGCCAGAAAATGGAGGCGAAGCTGCCGCTGAAGAAAATGCCCTCCACGGCG 5422087 Query 869294 GCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTT--GATCCACTTCA 869351 |||||| |||||| ||||| | || | |||| | | | | |||||| || Sbjct 5422088 GCAAAGGCGATGATGCGCTCCCCGAAATT-----GGCCGACTTGGATGAGATCCAGGACA 5422142 Query 869352 TCGCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCG 869398 |||||||| ||||| | |||| | ||||| ||| ||||| ||| Sbjct 5422143 GGGCCCAGTCTGCCTTGCGCTTCACAGCCGGCATCGTTTCGATAGCG 5422189 Score = 102 bits (112), Expect = 1e-15 Identities = 164/236 (69%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 868699 GTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCAT 868758 |||||| |||| | |||||||||||||||||| || || ||||| |||| |||||| Sbjct 5421667 GTACTCCGCCACCTTCTTCTCGAAAAAGTTGGTCTTTCCGTCCAGCGATATCATCTCCAT 5421726 Query 868759 CCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCG 868818 | || ||||| || |||||| |||| | || | | | |||||| || Sbjct 5421727 GAAGTTAAATGGGTTTTTGGTGTTGTAGATCTTTCCAACGCCCAACTCCACGAGCAAACG 5421786 Query 868819 GTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATGAGCGCCAC 868878 ||| || || ||||| ||||||||| |||| ||| || ||||||||||| | || Sbjct 5421787 GTCCGCTACGAACTCAATGTACTGGGACATCAGGTCGCAATTCATGCCGATCAAATTGAC 5421846 Query 868879 CGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATGATCT 868934 ||||| | ||| | | ||||| | ||| || | || || ||| |||||||| Sbjct 5421847 GGGCAGGGCATCGGTGAGGAACTCCTGCTCTATGGCCACCGCGTCGCGGATGATCT 5421902 >seq1556 Length=7591821 Score = 111 bits (122), Expect = 2e-18 Identities = 235/347 (68%), Gaps = 4/347 (1%) Strand=Plus/Minus Query 1573895 GGGTCCGCCCGGCACGGGCAAGACCACGAGCATCGCGTGTCTGGCGCGTGTCCTCTTGGG 1573954 |||||| || ||| ||||||||| || | |||| |||||| || | | || |||| Sbjct 4128196 GGGTCCTCCAGGCGTGGGCAAGACAACCACCATCCAGTGTCTTGCTAGAATTCTTCTGGG 4128137 Query 1573955 CGCGGCCGCCGACGAGGCCGTGCTCGAACTCAACGCGTCGGACGAGCGCGGCGTCGACGT 1574014 | | | | ||||| || ||||| || || || || | || || || |||| || Sbjct 4128136 AGACAGCTACAAGGAGGCTGTCCTCGAGCTGAATGCCTCCAATGAACGAGGAATCGATGT 4128077 Query 1574015 CGTGCGCAAGATCATCAAGCACCACGC-CTCCAAGAGGATCGACCT-GCCGCCCGGACGC 1574072 || ||||| | |||||| || | ||| ||| ||| | ||||| || | Sbjct 4128076 GGTCCGCAACAAGATCAAGATGTTTGCTCAGCAAAAGGT--GACATTGCCGCGGGGCAGG 4128019 Query 1574073 CACAAGGTGATCATCCTCGACGAGGCCGACTGCCTCACGTCGGCGGCCCAGCAGGCCCTG 1574132 |||||| | | || || |||||||||||| || | ||| || ||||||||||| ||| Sbjct 4128018 CACAAGATTGTAATTCTGGACGAGGCCGACAGCATGACGGAGGGTGCCCAGCAGGCACTG 4127959 Query 1574133 CGGTCCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCTGGCGTGCAACACGTCG 1574192 || |||||||| | ||| || ||| || || ||||||||||| |||||||| Sbjct 4127958 CGTCGGACCATGGAGATCTACAGCAGCACCACTCGTTTTGCCCTGGCCTGCAACACCAGC 4127899 Query 1574193 TCGATGGTCATCGAGGCCCTCCAAAGTCGCTGCGCCATTCTGCGCTT 1574239 || | |||| ||| | |||| ||||||||||| || || || Sbjct 4127898 GAGAAGATCATAGAGCCTATCCAGTCCCGCTGCGCCATGCTACGATT 4127852 >seq1558 Length=21120651 Score = 107 bits (118), Expect = 2e-17 Identities = 334/503 (66%), Gaps = 18/503 (4%) Strand=Plus/Plus Query 1852163 AAGGCAAATATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTGCTGC 1852222 |||| ||| |||||||||||||| || || ||||| ||||| || | ||||| || | Sbjct 8505956 AAGGTAAAGATCTTGCGCTGGTCTACGCCACCGAACTGTGCGTCCACCTTGAGGTACTCC 8506015 Query 1852223 TCGTCGAGGGCCTGCATGAGCGGG-TAGAGCACGTTGCTCAGGAGCGGGTTGCGGTCCAT 1852281 ||||| || ||||||| || |||| ||||||| | || || |||| |||| Sbjct 8506016 TCGTCCAGAGCCTGCA-GACCGGGATAGAGCAACCCGGAAAGCAGTGGGTAC---TCCAC 8506071 Query 1852282 CT---TGACCACCTGAGCGGCGGCCTTTTGCGC--CGTGCCG-GTGCGCACGTGCGCCGC 1852335 | ||||||| | ||| | ||||| | || |||| | ||| |||| | || | Sbjct 8506072 TTGTTTGACCACTTCTGCGCCCGCCTTCTTGGCATCGTGTTGCGTGACCACG-GAGCTGA 8506130 Query 1852336 GAGTCGGTAGAGGTCGAGCGCGTAGGCGCCGCCGCACTGGTACTCGGTGCCGCGCACAAA 1852395 | | ||| | || || | ||| | | ||| || ||| |||| || || Sbjct 8506131 GCTT--GTATACATCCAGGGTGTATTCCTTGGACAGCTGATAGTCGCTGCCCTTGACGAA 8506188 Query 1852396 CT-CGAGTCCGCCCAGCGGCACGCCGAT-GTGCTGGAGCATGGCCTTGATGGCAAACTCG 1852453 || | | | | || ||||| |||||||| | ||| | ||||||||||||| | |||| Sbjct 8506189 CTTCAACTTCTCC-AGCGGAACGCCGATTGCGCTCAA-CATGGCCTTGATGACCTGCTCG 8506246 Query 1852454 TACCAGCGGCACCGGTGTTCGACCAGGTCCCACGGCGTCTTGCCGTTGTCGAGGTGGGCG 1852513 || | || || | |||| ||| ||| || | || |||||| || | |||| Sbjct 8506247 TAGTACTGGGTGCGCAGCTCGAGCAGAGACCAGGGTGCTTTCATGTTGTCCAGATAGGCG 8506306 Query 1852514 TGCACGTCGGCAAAGAGGATCTTGACCCGACAGCCGGCCTGGAGAAAGTCGGCCAGTTTG 1852573 || | ||||| || ||||| | || || || |||| || || ||||| | || Sbjct 8506307 TGGAGATCGGCGAACAGGATGGTCACTTCGCATCCTGCCTTCAGGAAATCGGCAATCTTC 8506366 Query 1852574 AAGATGGGCACAAAGTAGCCTAGGTGCGGGTTGCCCGTCGGCGCCGTGCCCCAATATATG 1852633 | |||||||| || ||| | | || || |||||||||| |||||| ||||| || || Sbjct 8506367 GACATGGGCACGAAATAGGCGACATGTGGCTTGCCCGTCGTCGCCGTTCCCCAGTAGATC 8506426 Query 1852634 ATCAGGGGGCGCTCGGCCATGAT 1852656 |||| ||||| |||| ||| Sbjct 8506427 TTCAGATCTCGCTCCGCCAGGAT 8506449 >seq1548 Length=3036183 Score = 98.7 bits (108), Expect = 1e-14 Identities = 138/192 (72%), Gaps = 4/192 (2%) Strand=Plus/Plus Query 1592106 AGAAGCGCACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGAC--GTCGAGCAGCC 1592163 ||||||| || |||||||| | ||||| | || ||| | | ||||| ||| Sbjct 396773 AGAAGCGGACAGACGACATTATCTCATGGGAT--GCAGATTTCCTAAAAGTCGACCAGGG 396830 Query 1592164 CACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCT 1592223 ||| | |||||| | || | || || ||||| || ||||||||| || || || || Sbjct 396831 CACATTGTTTGAGCTCATTTTGGCAGCGAACTATCTGGACATCAAGGGCCTCCTGGAGCT 396890 Query 1592224 TGGGTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGAC 1592283 |||||| |||| || |||||||| ||||| ||| | |||||||| || |||||||| Sbjct 396891 CACCTGCAAGACTGTTGCAAACATGATTAAGGGAAAGACTCCCGAGGAAATACGCAAGAC 396950 Query 1592284 CTTTAACATCAA 1592295 ||| ||||| || Sbjct 396951 CTTCAACATTAA 396962 >seq1549 Length=3197100 Score = 86.0 bits (94), Expect = 8e-11 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 1592156 GAGCAGCCCACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTG 1592215 || ||| ||| |||||||| | ||||| || ||||||||||| |||||| |||| Sbjct 2634861 GATCAGGGCACGCTCTTTGAACTCATCCTGGCGGCCAACTACCTGGACATCCCCAATCTG 2634802 Query 1592216 CTCGATCTTGGGTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATC 1592275 || | | |||| | | ||||||||||||||||||||| || | |||||||| Sbjct 2634801 CTGAACGCCGCCTGCATGACGGTGGCCAACATGATCAAGGGCCGCACGGCGGAGGAGATT 2634742 Query 1592276 CGCAAGACCTTTAACAT 1592292 ||| ||||||| |||| Sbjct 2634741 CGCCAGACCTTCCACAT 2634725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6105930305154727