Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18]
14,731 sequences; 166,592,095 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq1557 129 7e-24
seq1556 111 2e-18
seq1558 107 2e-17
seq1548 98.7 1e-14
seq1549 86.0 8e-11
>seq1557
Length=14215200
Score = 129 bits (142), Expect = 7e-24
Identities = 143/191 (75%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 1592106 AGAAGCGCACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCA 1592165
|||||||||| || |||||||| | |||||| || ||| | | || || ||| ||
Sbjct 5572335 AGAAGCGCACGGATGACATCTCATCCTGGGACGCTGACTTTCTCAAAGTGGACCAGGGCA 5572276
Query 1592166 CCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTG 1592225
| || || || |||||||||| ||||||||||| | ||| || | ||||||| |
Sbjct 5572275 CGCTGTTCGAACTGATCCTCGCGGCCAACTACCTGAATATCCAGGGTTTGCTCGACGTCA 5572216
Query 1592226 GGTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCT 1592285
|||||| | |||||||| |||||||||||||||||||| |||| || ||| | ||||
Sbjct 5572215 CCTGCAAGACGGTGGCCAATATGATCAAGGGCAAGTCGCCGCAGGACATTCGCGACACCT 5572156
Query 1592286 TTAACATCAAG 1592296
| |||||||
Sbjct 5572155 TCGCCATCAAG 5572145
Score = 123 bits (136), Expect = 3e-22
Identities = 170/236 (72%), Gaps = 4/236 (2%)
Strand=Plus/Plus
Query 869631 CCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTT 869690
||||||| | |||||| |||||||||||||||||||| ||| | |||| | | |
Sbjct 5422254 CCGAGTGCACGTTCTCCATGGCGATCTGGAAGCCGTAGAAGCATCGTGCCTCCGTGATCT 5422313
Query 869691 GGACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGA 869750
| ||||||| |||| || | ||||||||||| |||||||| || ||||||||
Sbjct 5422314 GCACCTCCTGACTGAAGCGCTCCACCAGGTTCTCGTTTACGATGCCATCAGAGGCGGCGA 5422373
Query 869751 AAAAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGT--G 869808
| || ||||| |||||| ||| || |||||||||||||| | || ||||| |
Sbjct 5422374 AGAAGGCCAGCACGTGCGAGATGAAATGGCGCTCGTCGTCCTTCAGGCGGTGCCAGTCAG 5422433
Query 869809 GACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCT 869864
| | ||| | | |||||||||||| ||||||||| || ||||| ||||
Sbjct 5422434 TAAG--GTCCTTGGACAAATCCACCTCCTCGACGGTCCAGAAAGAAGCCTCAGCCT 5422487
Score = 114 bits (126), Expect = 2e-19
Identities = 162/227 (71%), Gaps = 7/227 (3%)
Strand=Plus/Plus
Query 869174 TGCGAACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCG 869233
||| | || ||||||||| ||||| |||||| |||| | || ||||| || |||
Sbjct 5421968 TGCAAGCCCTCGTCGCGAGAGATCAGCTCGTTGGAGAAGGTCAATCCAGGCATCAGACCG 5422027
Query 869234 CGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCG 869293
|||||||| ||||| || |||| | ||| ||||| ||| || |||||||| ||||||
Sbjct 5422028 CGCTTCTTAAGCCAGAAAATGGAGGCGAAGCTGCCGCTGAAGAAAATGCCCTCCACGGCG 5422087
Query 869294 GCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTT--GATCCACTTCA 869351
|||||| |||||| ||||| | || | |||| | | | | |||||| ||
Sbjct 5422088 GCAAAGGCGATGATGCGCTCCCCGAAATT-----GGCCGACTTGGATGAGATCCAGGACA 5422142
Query 869352 TCGCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCG 869398
|||||||| ||||| | |||| | ||||| ||| ||||| |||
Sbjct 5422143 GGGCCCAGTCTGCCTTGCGCTTCACAGCCGGCATCGTTTCGATAGCG 5422189
Score = 102 bits (112), Expect = 1e-15
Identities = 164/236 (69%), Gaps = 0/236 (0%)
Strand=Plus/Plus
Query 868699 GTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCAT 868758
|||||| |||| | |||||||||||||||||| || || ||||| |||| ||||||
Sbjct 5421667 GTACTCCGCCACCTTCTTCTCGAAAAAGTTGGTCTTTCCGTCCAGCGATATCATCTCCAT 5421726
Query 868759 CCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCG 868818
| || ||||| || |||||| |||| | || | | | |||||| ||
Sbjct 5421727 GAAGTTAAATGGGTTTTTGGTGTTGTAGATCTTTCCAACGCCCAACTCCACGAGCAAACG 5421786
Query 868819 GTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATGAGCGCCAC 868878
||| || || ||||| ||||||||| |||| ||| || ||||||||||| | ||
Sbjct 5421787 GTCCGCTACGAACTCAATGTACTGGGACATCAGGTCGCAATTCATGCCGATCAAATTGAC 5421846
Query 868879 CGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATGATCT 868934
||||| | ||| | | ||||| | ||| || | || || ||| ||||||||
Sbjct 5421847 GGGCAGGGCATCGGTGAGGAACTCCTGCTCTATGGCCACCGCGTCGCGGATGATCT 5421902
>seq1556
Length=7591821
Score = 111 bits (122), Expect = 2e-18
Identities = 235/347 (68%), Gaps = 4/347 (1%)
Strand=Plus/Minus
Query 1573895 GGGTCCGCCCGGCACGGGCAAGACCACGAGCATCGCGTGTCTGGCGCGTGTCCTCTTGGG 1573954
|||||| || ||| ||||||||| || | |||| |||||| || | | || ||||
Sbjct 4128196 GGGTCCTCCAGGCGTGGGCAAGACAACCACCATCCAGTGTCTTGCTAGAATTCTTCTGGG 4128137
Query 1573955 CGCGGCCGCCGACGAGGCCGTGCTCGAACTCAACGCGTCGGACGAGCGCGGCGTCGACGT 1574014
| | | | ||||| || ||||| || || || || | || || || |||| ||
Sbjct 4128136 AGACAGCTACAAGGAGGCTGTCCTCGAGCTGAATGCCTCCAATGAACGAGGAATCGATGT 4128077
Query 1574015 CGTGCGCAAGATCATCAAGCACCACGC-CTCCAAGAGGATCGACCT-GCCGCCCGGACGC 1574072
|| ||||| | |||||| || | ||| ||| ||| | ||||| || |
Sbjct 4128076 GGTCCGCAACAAGATCAAGATGTTTGCTCAGCAAAAGGT--GACATTGCCGCGGGGCAGG 4128019
Query 1574073 CACAAGGTGATCATCCTCGACGAGGCCGACTGCCTCACGTCGGCGGCCCAGCAGGCCCTG 1574132
|||||| | | || || |||||||||||| || | ||| || ||||||||||| |||
Sbjct 4128018 CACAAGATTGTAATTCTGGACGAGGCCGACAGCATGACGGAGGGTGCCCAGCAGGCACTG 4127959
Query 1574133 CGGTCCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCTGGCGTGCAACACGTCG 1574192
|| |||||||| | ||| || ||| || || ||||||||||| ||||||||
Sbjct 4127958 CGTCGGACCATGGAGATCTACAGCAGCACCACTCGTTTTGCCCTGGCCTGCAACACCAGC 4127899
Query 1574193 TCGATGGTCATCGAGGCCCTCCAAAGTCGCTGCGCCATTCTGCGCTT 1574239
|| | |||| ||| | |||| ||||||||||| || || ||
Sbjct 4127898 GAGAAGATCATAGAGCCTATCCAGTCCCGCTGCGCCATGCTACGATT 4127852
>seq1558
Length=21120651
Score = 107 bits (118), Expect = 2e-17
Identities = 334/503 (66%), Gaps = 18/503 (4%)
Strand=Plus/Plus
Query 1852163 AAGGCAAATATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTGCTGC 1852222
|||| ||| |||||||||||||| || || ||||| ||||| || | ||||| || |
Sbjct 8505956 AAGGTAAAGATCTTGCGCTGGTCTACGCCACCGAACTGTGCGTCCACCTTGAGGTACTCC 8506015
Query 1852223 TCGTCGAGGGCCTGCATGAGCGGG-TAGAGCACGTTGCTCAGGAGCGGGTTGCGGTCCAT 1852281
||||| || ||||||| || |||| ||||||| | || || |||| ||||
Sbjct 8506016 TCGTCCAGAGCCTGCA-GACCGGGATAGAGCAACCCGGAAAGCAGTGGGTAC---TCCAC 8506071
Query 1852282 CT---TGACCACCTGAGCGGCGGCCTTTTGCGC--CGTGCCG-GTGCGCACGTGCGCCGC 1852335
| ||||||| | ||| | ||||| | || |||| | ||| |||| | || |
Sbjct 8506072 TTGTTTGACCACTTCTGCGCCCGCCTTCTTGGCATCGTGTTGCGTGACCACG-GAGCTGA 8506130
Query 1852336 GAGTCGGTAGAGGTCGAGCGCGTAGGCGCCGCCGCACTGGTACTCGGTGCCGCGCACAAA 1852395
| | ||| | || || | ||| | | ||| || ||| |||| || ||
Sbjct 8506131 GCTT--GTATACATCCAGGGTGTATTCCTTGGACAGCTGATAGTCGCTGCCCTTGACGAA 8506188
Query 1852396 CT-CGAGTCCGCCCAGCGGCACGCCGAT-GTGCTGGAGCATGGCCTTGATGGCAAACTCG 1852453
|| | | | | || ||||| |||||||| | ||| | ||||||||||||| | ||||
Sbjct 8506189 CTTCAACTTCTCC-AGCGGAACGCCGATTGCGCTCAA-CATGGCCTTGATGACCTGCTCG 8506246
Query 1852454 TACCAGCGGCACCGGTGTTCGACCAGGTCCCACGGCGTCTTGCCGTTGTCGAGGTGGGCG 1852513
|| | || || | |||| ||| ||| || | || |||||| || | ||||
Sbjct 8506247 TAGTACTGGGTGCGCAGCTCGAGCAGAGACCAGGGTGCTTTCATGTTGTCCAGATAGGCG 8506306
Query 1852514 TGCACGTCGGCAAAGAGGATCTTGACCCGACAGCCGGCCTGGAGAAAGTCGGCCAGTTTG 1852573
|| | ||||| || ||||| | || || || |||| || || ||||| | ||
Sbjct 8506307 TGGAGATCGGCGAACAGGATGGTCACTTCGCATCCTGCCTTCAGGAAATCGGCAATCTTC 8506366
Query 1852574 AAGATGGGCACAAAGTAGCCTAGGTGCGGGTTGCCCGTCGGCGCCGTGCCCCAATATATG 1852633
| |||||||| || ||| | | || || |||||||||| |||||| ||||| || ||
Sbjct 8506367 GACATGGGCACGAAATAGGCGACATGTGGCTTGCCCGTCGTCGCCGTTCCCCAGTAGATC 8506426
Query 1852634 ATCAGGGGGCGCTCGGCCATGAT 1852656
|||| ||||| |||| |||
Sbjct 8506427 TTCAGATCTCGCTCCGCCAGGAT 8506449
>seq1548
Length=3036183
Score = 98.7 bits (108), Expect = 1e-14
Identities = 138/192 (72%), Gaps = 4/192 (2%)
Strand=Plus/Plus
Query 1592106 AGAAGCGCACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGAC--GTCGAGCAGCC 1592163
||||||| || |||||||| | ||||| | || ||| | | ||||| |||
Sbjct 396773 AGAAGCGGACAGACGACATTATCTCATGGGAT--GCAGATTTCCTAAAAGTCGACCAGGG 396830
Query 1592164 CACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCT 1592223
||| | |||||| | || | || || ||||| || ||||||||| || || || ||
Sbjct 396831 CACATTGTTTGAGCTCATTTTGGCAGCGAACTATCTGGACATCAAGGGCCTCCTGGAGCT 396890
Query 1592224 TGGGTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGAC 1592283
|||||| |||| || |||||||| ||||| ||| | |||||||| || ||||||||
Sbjct 396891 CACCTGCAAGACTGTTGCAAACATGATTAAGGGAAAGACTCCCGAGGAAATACGCAAGAC 396950
Query 1592284 CTTTAACATCAA 1592295
||| ||||| ||
Sbjct 396951 CTTCAACATTAA 396962
>seq1549
Length=3197100
Score = 86.0 bits (94), Expect = 8e-11
Identities = 101/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 1592156 GAGCAGCCCACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTG 1592215
|| ||| ||| |||||||| | ||||| || ||||||||||| |||||| ||||
Sbjct 2634861 GATCAGGGCACGCTCTTTGAACTCATCCTGGCGGCCAACTACCTGGACATCCCCAATCTG 2634802
Query 1592216 CTCGATCTTGGGTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATC 1592275
|| | | |||| | | ||||||||||||||||||||| || | ||||||||
Sbjct 2634801 CTGAACGCCGCCTGCATGACGGTGGCCAACATGATCAAGGGCCGCACGGCGGAGGAGATT 2634742
Query 1592276 CGCAAGACCTTTAACAT 1592292
||| ||||||| ||||
Sbjct 2634741 CGCCAGACCTTCCACAT 2634725
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6105930305154727
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |