Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18]
14,731 sequences; 166,592,095 total letters
Query= NC_021924.1
Length=129052
Score E
Sequences producing significant alignments: (Bits) Value
seq1377 163 2e-35
seq1558 89.7 4e-13
>seq1377
Length=33538
Score = 163 bits (180), Expect = 2e-35
Identities = 168/218 (77%), Gaps = 4/218 (2%)
Strand=Plus/Plus
Query 34432 TTGTAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATG 34491
|||| ||| | | |||| || |||||||||||||| || |||||||| || || || ||
Sbjct 7342 TTGTGATCAAACAGCGTCTGGGCGCCCAGCTCGCAACCAAAGTACTTGGTTGGATAGGTG 7401
Query 34492 GCCGGACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCG 34551
||||| ||||| | ||| | || | ||| | ||||||||| | || |||||||| |||
Sbjct 7402 GCCGGGCGTCCGATGGCCCTAGCCACTTCCGCCATGTTGACCAGCACGGTCTTGATCCCG 7461
Query 34552 TTGCCCTTTCCTTCGACCTTGGC--GCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGT 34609
|| ||||| || |||||||| || ||||| || ||||| |||||||| ||||| ||
Sbjct 7462 TTTCCCTTGCCCTCGACCTTTGCCTGCAGA--CGTGGCATCTTGTAGCGATAGAAGATGT 7519
Query 34610 CCGCCACATTGCGGTTAACGTTCACAGTCCCCATCGTG 34647
||| |||| ||||||| ||||| || || ||||| ||
Sbjct 7520 CCGTCACACTGCGGTTTACGTTTACGGTGGCCATCTTG 7557
Score = 89.7 bits (98), Expect = 4e-13
Identities = 135/192 (70%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 34200 TGCCGGCGGGTTTTTCAGTATGAAGGTGTTGAGCTTATGCGAGAAGTGTAGCGTGCCGTG 34259
|| ||||||||| |||| ||||| ||||| | ||||| | | ||| || ||
Sbjct 7046 TGACGGCGGGTTCTTCACAATGAATGTGTTCACTTTATGGTTAACCTTGAGCAGACCATG 7105
Query 34260 ATAACCGCATGCTTTGCAGCCCTGACAGATAATGTTCTTTTTAGCGGACACGATGAGCTC 34319
| |||||||| ||||| ||| | || | | ||||| || ||||| | | |
Sbjct 7106 GAAGCCGCATGCCTTGCAAGACTGCGATATGGTCTGGTTTTTGGCTGACACAGTCAAATT 7165
Query 34320 AGTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCAAGCAG 34379
|||||||| ||||| || || || || |||||||||||||| || |||||||| | ||
Sbjct 7166 GGTCTCCGGATTGTCGCACTCGGGGCATAACACAAACTTGCGAATAAAACCATCCAACAA 7225
Query 34380 GTCCTGTAACTT 34391
||||| |||||
Sbjct 7226 ATCCTGCAACTT 7237
>seq1558
Length=21120651
Score = 89.7 bits (98), Expect = 4e-13
Identities = 107/140 (76%), Gaps = 4/140 (3%)
Strand=Plus/Minus
Query 107171 GGACTGCACGGCTTCCACGTGCACGAATTTGGCGACACCAGCAACGGCTGTACGTCCGCC 107230
|| ||||| || |||||||||||||| ||||| |||| || ||||||||| | ||| ||
Sbjct 3328251 GGTCTGCATGGATTCCACGTGCACGAGTTTGGAGACAACACCAACGGCTGCATGTCATCC 3328192
Query 107231 GGTGAACACTTCAATCCCACATACCAA-AATCACGGTGCGCCCGACGCCGTAGAA-AGGC 107288
|| ||||||||| || || ||| | ||||| || |||| || || |||| | |
Sbjct 3328191 GGACCCCACTTCAAT-CCGTATGGCAAGGAGCACGGCGCTCCCGTCGACG-AGAACCGTC 3328134
Query 107289 ACGTCGGCGATCTGGGCAAC 107308
|| | |||||||||||||||
Sbjct 3328133 ACCTGGGCGATCTGGGCAAC 3328114
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 412767480870383
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |