Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18] 14,731 sequences; 166,592,095 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq1377 163 2e-35 seq1558 89.7 4e-13 >seq1377 Length=33538 Score = 163 bits (180), Expect = 2e-35 Identities = 168/218 (77%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 34432 TTGTAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATG 34491 |||| ||| | | |||| || |||||||||||||| || |||||||| || || || || Sbjct 7342 TTGTGATCAAACAGCGTCTGGGCGCCCAGCTCGCAACCAAAGTACTTGGTTGGATAGGTG 7401 Query 34492 GCCGGACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCG 34551 ||||| ||||| | ||| | || | ||| | ||||||||| | || |||||||| ||| Sbjct 7402 GCCGGGCGTCCGATGGCCCTAGCCACTTCCGCCATGTTGACCAGCACGGTCTTGATCCCG 7461 Query 34552 TTGCCCTTTCCTTCGACCTTGGC--GCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGT 34609 || ||||| || |||||||| || ||||| || ||||| |||||||| ||||| || Sbjct 7462 TTTCCCTTGCCCTCGACCTTTGCCTGCAGA--CGTGGCATCTTGTAGCGATAGAAGATGT 7519 Query 34610 CCGCCACATTGCGGTTAACGTTCACAGTCCCCATCGTG 34647 ||| |||| ||||||| ||||| || || ||||| || Sbjct 7520 CCGTCACACTGCGGTTTACGTTTACGGTGGCCATCTTG 7557 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34200 TGCCGGCGGGTTTTTCAGTATGAAGGTGTTGAGCTTATGCGAGAAGTGTAGCGTGCCGTG 34259 || ||||||||| |||| ||||| ||||| | ||||| | | ||| || || Sbjct 7046 TGACGGCGGGTTCTTCACAATGAATGTGTTCACTTTATGGTTAACCTTGAGCAGACCATG 7105 Query 34260 ATAACCGCATGCTTTGCAGCCCTGACAGATAATGTTCTTTTTAGCGGACACGATGAGCTC 34319 | |||||||| ||||| ||| | || | | ||||| || ||||| | | | Sbjct 7106 GAAGCCGCATGCCTTGCAAGACTGCGATATGGTCTGGTTTTTGGCTGACACAGTCAAATT 7165 Query 34320 AGTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCAAGCAG 34379 |||||||| ||||| || || || || |||||||||||||| || |||||||| | || Sbjct 7166 GGTCTCCGGATTGTCGCACTCGGGGCATAACACAAACTTGCGAATAAAACCATCCAACAA 7225 Query 34380 GTCCTGTAACTT 34391 ||||| ||||| Sbjct 7226 ATCCTGCAACTT 7237 >seq1558 Length=21120651 Score = 89.7 bits (98), Expect = 4e-13 Identities = 107/140 (76%), Gaps = 4/140 (3%) Strand=Plus/Minus Query 107171 GGACTGCACGGCTTCCACGTGCACGAATTTGGCGACACCAGCAACGGCTGTACGTCCGCC 107230 || ||||| || |||||||||||||| ||||| |||| || ||||||||| | ||| || Sbjct 3328251 GGTCTGCATGGATTCCACGTGCACGAGTTTGGAGACAACACCAACGGCTGCATGTCATCC 3328192 Query 107231 GGTGAACACTTCAATCCCACATACCAA-AATCACGGTGCGCCCGACGCCGTAGAA-AGGC 107288 || ||||||||| || || ||| | ||||| || |||| || || |||| | | Sbjct 3328191 GGACCCCACTTCAAT-CCGTATGGCAAGGAGCACGGCGCTCCCGTCGACG-AGAACCGTC 3328134 Query 107289 ACGTCGGCGATCTGGGCAAC 107308 || | ||||||||||||||| Sbjct 3328133 ACCTGGGCGATCTGGGCAAC 3328114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412767480870383