Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18] 14,731 sequences; 166,592,095 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq1558 109 4e-18 >seq1558 Length=21120651 Score = 109 bits (120), Expect = 4e-18 Identities = 272/413 (66%), Gaps = 0/413 (0%) Strand=Plus/Minus Query 281426 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 281485 || |||||||| || || ||||||||||| | ||||| || || || | || || || Sbjct 6117178 GCCGTCACATTGAGTATTCCATTGGCATCGATGTCAAAGGTCACCTCCACCTGGGGCACT 6117119 Query 281486 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 281545 || | |||| ||||| || | | ||| | ||||| | || ||||| Sbjct 6117118 CCGCGTGGAGCCGGTGGAATTGACGAGAGCTCAAACTTACCCAGGCTGTTGTTATCCCGC 6117059 Query 281546 GTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAA 281605 || | |||||||||||||| | |||||| || | | || || || | |||| Sbjct 6117058 GTCATCGCCCGTTCACCCTCGAACACCTGGATAAGCACACCTGGCTGGTTGTCCGCATAA 6116999 Query 281606 GTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTC 281665 || ||||| | | | || || || || || ||||| || | ||| | ||||| Sbjct 6116998 GTGGTAAAGATTTGCGTTTGCTTGGTGGGTATGGTGGTGTTCCTTTTAATCAGCGTGGTC 6116939 Query 281666 ATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATA 281725 || | |||||||| || || | ||| ||||| |||||||||||||| | |||| | | Sbjct 6116938 ATCACTCCACCAGCGGTCTCAATACCCAGAGACAGAGGAGTGACATCGAGCAGGAGCAGA 6116879 Query 281726 TTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATAT 281785 | || | | || || | ||| ||| ||||| || || | ||||||||||| Sbjct 6116878 TCCTGCACTGCCTCCGATGTATCGCCATGAAGGATAGCCGCCTGCACTGCAGCACCATAG 6116819 Query 281786 GCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAA 281838 ||||| || || || ||||| | | | ||||| | || || |||||||| Sbjct 6116818 GCAACCGCCTCGTCGGGATTGATGGACTTGTTTAGATCCTTGCCGTTGAAAAA 6116766 Score = 109 bits (120), Expect = 4e-18 Identities = 450/705 (64%), Gaps = 6/705 (1%) Strand=Plus/Plus Query 282179 GTTACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTT 282238 || || ||||| || || || || ||||| |||| | |||| ||| | ||| | | Sbjct 10881023 GTGACTAGACGGTTGTCGAAGTCCTCACCACCCAGATGCGTATCTCCGGCCGTGGACTTG 10881082 Query 282239 ACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATA 282298 || | ||| | || || || | |||| | | ||||| ||| || || |||| | Sbjct 10881083 ACCTCGAAGATACCGTCATCGATCGACAGGATGGACACATCGAAGGTGCCGCCGCCCAGA 10881142 Query 282299 TCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCA 282358 || || ||||| || || ||| | || || || ||||| || || | |||| Sbjct 10881143 TCGAAGATAAGCACGTTGCGCTCTCCAACAGCCTTCTTGTCCAGACCGTAAGCGATAGCA 10881202 Query 282359 GCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCT 282418 || ||||| || || || || || | || ||||| ||||| || || |||| || || Sbjct 10881203 GCGGCAGTGGGCTCGTTGATGATACGCAGCACATTCAGACCGGCGATGGTTCCGGCGTCC 10881262 Query 282419 TTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTT 282478 || || || || | || || ||||| || || || || || || || || || | || Sbjct 10881263 TTGGTCGCCTGACGCTGAGAGTCGTTGAAGTAGGCCGGCACGGTGATGACAGCGTTGGTC 10881322 Query 282479 ACTTCTTTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAA 282538 || || || | ||| || || || | ||||| || | | | ||| || || Sbjct 10881323 ACAGTCTTGCCCAGATAGGCCTCGGCGGTCTCCTTCATCTTGGTGAGCACCATCGAGGAG 10881382 Query 282539 ATTTGTTCTGGAGAATATTG-CTTGGATTCATTTTGATATGATACTTCAAAATATGGTTT 282597 || | || || ||| | | ||| || | | || | || || | | || || Sbjct 10881383 ATCTCCTCGGG-GAAGAAGGTCTTCTTCTCGTCCTTGTAGGTCACCTCGATCTTGGGCTT 10881441 Query 282598 ATTACCAACATTAATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGG-- 282655 | | | | | || | || ||||| | ||||| || || || ||| || Sbjct 10881442 GCCATCGGCGCTGACCACATCGAAGGGCCAGTGCTTCATGTCAGACTG--CACGGCGGCA 10881499 Query 282656 TCATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACT 282715 |||| || | | |||||| || || || || || || || || | ||| || || | Sbjct 10881500 TCATCGAACTTGCGACCAATCAAGCGCTTGGCGTCGAAGATCGTCTGGGTCGGGTTCATC 10881559 Query 282716 GCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATAT 282775 || | || | ||||| |||||||| |||||| | || || || || || | |||||| Sbjct 10881560 GCCACCTGGTTCTTGGCGGCATCTCCGATCAGACGCTCCGTATCGGTGAAGGCAACATAG 10881619 Query 282776 GATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCAT 282835 |||||||| || |||||||| || || || || || || || || || |||| || | Sbjct 10881620 GATGGAGTGGTACGATTACCCTGGTCGTTGGCGATGATCTCGACCTTGCCATGCTGGAAC 10881679 Query 282836 ACACCTACACAACTAAAAGTTGTTCCTAAATCAATACCAATAGCA 282880 || || || || | || || || ||||||||||||| |||| Sbjct 10881680 ACGCCCACGCACGAGTAGGTGGTGCCCAAATCAATACCAACAGCA 10881724 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3739907170153206