Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18]
14,731 sequences; 166,592,095 total letters
Query= NC_023639.1
Length=1168989
Score E
Sequences producing significant alignments: (Bits) Value
seq1558 109 4e-18
>seq1558
Length=21120651
Score = 109 bits (120), Expect = 4e-18
Identities = 272/413 (66%), Gaps = 0/413 (0%)
Strand=Plus/Minus
Query 281426 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 281485
|| |||||||| || || ||||||||||| | ||||| || || || | || || ||
Sbjct 6117178 GCCGTCACATTGAGTATTCCATTGGCATCGATGTCAAAGGTCACCTCCACCTGGGGCACT 6117119
Query 281486 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 281545
|| | |||| ||||| || | | ||| | ||||| | || |||||
Sbjct 6117118 CCGCGTGGAGCCGGTGGAATTGACGAGAGCTCAAACTTACCCAGGCTGTTGTTATCCCGC 6117059
Query 281546 GTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAA 281605
|| | |||||||||||||| | |||||| || | | || || || | ||||
Sbjct 6117058 GTCATCGCCCGTTCACCCTCGAACACCTGGATAAGCACACCTGGCTGGTTGTCCGCATAA 6116999
Query 281606 GTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTC 281665
|| ||||| | | | || || || || || ||||| || | ||| | |||||
Sbjct 6116998 GTGGTAAAGATTTGCGTTTGCTTGGTGGGTATGGTGGTGTTCCTTTTAATCAGCGTGGTC 6116939
Query 281666 ATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATA 281725
|| | |||||||| || || | ||| ||||| |||||||||||||| | |||| | |
Sbjct 6116938 ATCACTCCACCAGCGGTCTCAATACCCAGAGACAGAGGAGTGACATCGAGCAGGAGCAGA 6116879
Query 281726 TTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATAT 281785
| || | | || || | ||| ||| ||||| || || | |||||||||||
Sbjct 6116878 TCCTGCACTGCCTCCGATGTATCGCCATGAAGGATAGCCGCCTGCACTGCAGCACCATAG 6116819
Query 281786 GCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAA 281838
||||| || || || ||||| | | | ||||| | || || ||||||||
Sbjct 6116818 GCAACCGCCTCGTCGGGATTGATGGACTTGTTTAGATCCTTGCCGTTGAAAAA 6116766
Score = 109 bits (120), Expect = 4e-18
Identities = 450/705 (64%), Gaps = 6/705 (1%)
Strand=Plus/Plus
Query 282179 GTTACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTT 282238
|| || ||||| || || || || ||||| |||| | |||| ||| | ||| | |
Sbjct 10881023 GTGACTAGACGGTTGTCGAAGTCCTCACCACCCAGATGCGTATCTCCGGCCGTGGACTTG 10881082
Query 282239 ACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATA 282298
|| | ||| | || || || | |||| | | ||||| ||| || || |||| |
Sbjct 10881083 ACCTCGAAGATACCGTCATCGATCGACAGGATGGACACATCGAAGGTGCCGCCGCCCAGA 10881142
Query 282299 TCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCA 282358
|| || ||||| || || ||| | || || || ||||| || || | ||||
Sbjct 10881143 TCGAAGATAAGCACGTTGCGCTCTCCAACAGCCTTCTTGTCCAGACCGTAAGCGATAGCA 10881202
Query 282359 GCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCT 282418
|| ||||| || || || || || | || ||||| ||||| || || |||| || ||
Sbjct 10881203 GCGGCAGTGGGCTCGTTGATGATACGCAGCACATTCAGACCGGCGATGGTTCCGGCGTCC 10881262
Query 282419 TTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTT 282478
|| || || || | || || ||||| || || || || || || || || || | ||
Sbjct 10881263 TTGGTCGCCTGACGCTGAGAGTCGTTGAAGTAGGCCGGCACGGTGATGACAGCGTTGGTC 10881322
Query 282479 ACTTCTTTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAA 282538
|| || || | ||| || || || | ||||| || | | | ||| || ||
Sbjct 10881323 ACAGTCTTGCCCAGATAGGCCTCGGCGGTCTCCTTCATCTTGGTGAGCACCATCGAGGAG 10881382
Query 282539 ATTTGTTCTGGAGAATATTG-CTTGGATTCATTTTGATATGATACTTCAAAATATGGTTT 282597
|| | || || ||| | | ||| || | | || | || || | | || ||
Sbjct 10881383 ATCTCCTCGGG-GAAGAAGGTCTTCTTCTCGTCCTTGTAGGTCACCTCGATCTTGGGCTT 10881441
Query 282598 ATTACCAACATTAATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGG-- 282655
| | | | | || | || ||||| | ||||| || || || ||| ||
Sbjct 10881442 GCCATCGGCGCTGACCACATCGAAGGGCCAGTGCTTCATGTCAGACTG--CACGGCGGCA 10881499
Query 282656 TCATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACT 282715
|||| || | | |||||| || || || || || || || || | ||| || || |
Sbjct 10881500 TCATCGAACTTGCGACCAATCAAGCGCTTGGCGTCGAAGATCGTCTGGGTCGGGTTCATC 10881559
Query 282716 GCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATAT 282775
|| | || | ||||| |||||||| |||||| | || || || || || | ||||||
Sbjct 10881560 GCCACCTGGTTCTTGGCGGCATCTCCGATCAGACGCTCCGTATCGGTGAAGGCAACATAG 10881619
Query 282776 GATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCAT 282835
|||||||| || |||||||| || || || || || || || || || |||| || |
Sbjct 10881620 GATGGAGTGGTACGATTACCCTGGTCGTTGGCGATGATCTCGACCTTGCCATGCTGGAAC 10881679
Query 282836 ACACCTACACAACTAAAAGTTGTTCCTAAATCAATACCAATAGCA 282880
|| || || || | || || || ||||||||||||| ||||
Sbjct 10881680 ACGCCCACGCACGAGTAGGTGGTGCCCAAATCAATACCAACAGCA 10881724
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3739907170153206
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |