Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18]
14,731 sequences; 166,592,095 total letters
Query= NC_023681.1
Length=152710
Score E
Sequences producing significant alignments: (Bits) Value
seq1556 100 3e-16
seq1555 91.5 1e-13
>seq1556
Length=7591821
Score = 100 bits (110), Expect = 3e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244
|| || || | ||| | ||| || |||| || || || || || |||||||||||| |
Sbjct 3892977 CCACCACGCAGACGGAGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGAC 3893036
Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304
| |||| |||||| ||||| || || || |||| ||||| |||||||| || |
Sbjct 3893037 AGGGTGCGTCCGTCTTCCAGTTGCTTGCCGGCGAAGATGAGACGCTGCTGATCTGGGGAG 3893096
Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364
|| || || || || ||| || || | | || | ||||| | ||||||||
Sbjct 3893097 ATTCCCTCCTTATCCTGAATCTTAGCCTTAACATTCTCGATGGTGTCCGACGGTTCTACC 3893156
Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412
|||| ||| | ||||| |||||||| || || ||||| || ||||||
Sbjct 3893157 TCAAGAGTGATGGTCTTTCCGGTCAAAGTCTTCACGAAGATCTGCATA 3893204
Score = 91.5 bits (100), Expect = 1e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244
|| || || | ||| | ||| ||||| | || || || || || |||||||||||| |
Sbjct 3893205 CCACCACGCAGACGGAGAACCAAATGGAGGGTTGACTCCTTCTGGATGTTGTAATCGGAC 3893264
Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304
| |||| |||||| | ||| || ||||| |||||||||| |||||||| || ||
Sbjct 3893265 AGGGTGCGTCCGTCTTCCAATTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGGGGA 3893324
Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364
|| || || ||||| ||||| || | | || | ||||| | || || ||
Sbjct 3893325 ATTCCCTCCTTGTCTTGGATTTTAGCCTTCACATTCTCAATGGTGTCCGATGGCTCAACC 3893384
Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412
|| | ||| | |||||||| || | || || ||||| || ||||||
Sbjct 3893385 TCCAAAGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATA 3893432
Score = 91.5 bits (100), Expect = 1e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244
|| || || | ||| | ||| || |||| || || || || || |||||||||||| |
Sbjct 3893661 CCACCACGCAGACGGAGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGAC 3893720
Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304
| |||| ||| || || || || || || |||||||||| |||||||| || ||
Sbjct 3893721 AGGGTGCGTCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGG 3893780
Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364
|| || || || || ||| || || | | || | ||||| | ||||||||
Sbjct 3893781 ATTCCCTCCTTATCCTGAATCTTAGCCTTAACATTCTCGATGGTGTCCGACGGTTCTACC 3893840
Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412
|||| | | ||||| |||||||| || || ||||| || ||||||
Sbjct 3893841 TCAAGGTTGATGGTCTTTCCGGTCAAAGTCTTCACGAAGATCTGCATA 3893888
Score = 91.5 bits (100), Expect = 1e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244
|| || || | ||| | ||| ||||| | || || || || || |||||||||||| |
Sbjct 3893889 CCACCACGCAGACGGAGAACCAAATGGAGGGTTGACTCCTTCTGGATGTTGTAATCGGAC 3893948
Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304
| |||| |||||| | ||| || ||||| |||||||||| |||||||| || ||
Sbjct 3893949 AGGGTGCGTCCGTCTTCCAATTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGGGGA 3894008
Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364
|| || || ||||| ||||| || | | || | ||||| | || || ||
Sbjct 3894009 ATTCCCTCCTTGTCTTGGATTTTAGCCTTCACATTCTCAATGGTGTCCGATGGCTCAACC 3894068
Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412
|| | ||| | |||||||| || | || || ||||| || ||||||
Sbjct 3894069 TCCAAAGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATA 3894116
Score = 91.5 bits (100), Expect = 1e-13
Identities = 161/232 (69%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244
|||||||| | ||||| ||| || |||| || || || || || ||||||||||| |
Sbjct 3894573 CCTCCTCGCAGACGCAGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGAC 3894632
Query 137245 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303
| |||| || | || || || || || || || |||||||||| |||||||| || ||
Sbjct 3894633 AGGGTGCGTCCA-TCCTCAAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCTGGGGG 3894691
Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363
|| || || || || ||| || || | | || | || || | || |||||
Sbjct 3894692 AATTCCCTCCTTATCCTGAATCTTAGCCTTAACATTCTCAATGGTATCAGAAGGCTCTAC 3894751
Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 137415
|| | || | ||||| |||||||| || || ||||| || |||||| ||
Sbjct 3894752 CTCGAGGGTGATAGTCTTTCCGGTCAAAGTCTTCACGAAGATCTGCATACCT 3894803
Score = 89.7 bits (98), Expect = 5e-13
Identities = 158/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244
|||||||| | ||||| ||| || |||| || || || || || ||||||||||| |
Sbjct 3895257 CCTCCTCGCAGACGCAGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGAC 3895316
Query 137245 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303
| |||| || | || || || || || || || |||||||||| |||||||| || ||
Sbjct 3895317 AGGGTGCGTCCA-TCCTCAAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCTGGGGG 3895375
Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363
|| || || || || ||| || || | | || | ||||| | || |||||
Sbjct 3895376 AATTCCCTCCTTATCCTGAATCTTAGCCTTAACATTCTCAATGGTGTCAGACGGCTCTAC 3895435
Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411
|| | || | ||||| |||||||| || || || || || |||||
Sbjct 3895436 CTCGAGGGTGATGGTCTTTCCGGTCAAGGTCTTCACAAAGATCTGCAT 3895483
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/231 (68%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244
|| || || | ||| | ||| || |||| || || || || || ||||||||||||
Sbjct 3894345 CCACCACGCAGACGGAGAACCAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAATCGGAA 3894404
Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304
| |||| ||| || |||||||| || || |||| ||||| |||||||| || ||
Sbjct 3894405 AGGGTGCGTCCGTCCTCCAGTTGTTTGCCGGCGAAGATGAGACGCTGCTGATCTGGGGGG 3894464
Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364
||||| || ||||| || || || | | || | ||||| | || || ||
Sbjct 3894465 ATGCCCTCCTTGTCTTGGATCTTAGCCTTCACATTCTCAATGGTGTCCGATGGCTCAACC 3894524
Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 137415
|| | ||| | |||||||| || | || || ||||| || |||||| ||
Sbjct 3894525 TCCAAAGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATACCT 3894575
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/231 (68%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244
|| || || | ||| | ||| || |||| || || || || || ||||||||||||
Sbjct 3895029 CCACCACGCAGACGGAGAACCAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAATCGGAA 3895088
Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304
| |||| ||| || |||||||| || || |||| ||||| |||||||| || ||
Sbjct 3895089 AGGGTGCGTCCGTCCTCCAGTTGTTTGCCGGCGAAGATGAGACGCTGCTGATCTGGGGGG 3895148
Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364
||||| || ||||| || || || | | || | ||||| | || || ||
Sbjct 3895149 ATGCCCTCCTTGTCTTGGATCTTAGCCTTCACATTCTCAATGGTGTCCGATGGCTCAACC 3895208
Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 137415
|| | ||| | |||||||| || | || || ||||| || |||||| ||
Sbjct 3895209 TCCAAAGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATACCT 3895259
Score = 82.4 bits (90), Expect = 7e-11
Identities = 155/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244
|| || || | ||| | ||| || |||| || || || || || |||||||||||| |
Sbjct 3893433 CCACCACGCAGACGGAGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGAC 3893492
Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304
| |||| |||||| ||||| || || || |||| ||||| |||||||| || ||
Sbjct 3893493 AGGGTGCGTCCGTCTTCCAGTTGCTTGCCGGCGAAGATGAGACGCTGCTGATCTGGGGGG 3893552
Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364
|| || || || || ||| || || | | || | ||||| | || || ||
Sbjct 3893553 ATTCCCTCCTTATCCTGAATCTTAGCCTTCACATTCTCAATGGTGTCCGATGGCTCAACC 3893612
Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412
|| | ||| | |||||||| || | || || ||||| || ||||||
Sbjct 3893613 TCCAAAGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATA 3893660
>seq1555
Length=7220098
Score = 91.5 bits (100), Expect = 1e-13
Identities = 113/155 (73%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 137257 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 137316
||||| || || || ||||| |||||||||| |||||||| ||||| || |||||||||
Sbjct 5837872 TCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTG 5837813
Query 137317 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACC 137376
|| ||| || ||| | | ||| | || || | ||||| || |||| ||| |
Sbjct 5837812 TCCTGAATCTTGGCTTTGACATTTTCGATAGTATCCGACGGTTCGACCTCAAGAGTGATG 5837753
Query 137377 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411
|||||||| || | || || ||||| || |||||
Sbjct 5837752 GTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCAT 5837718
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 488454040729200
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