Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20sechellia_20[refseq_20GCF_5F000005215.3_202006-04-18] 14,731 sequences; 166,592,095 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq1555 159 7e-34 seq1554 143 5e-29 seq1557 102 2e-16 >seq1555 Length=7220098 Score = 159 bits (176), Expect = 7e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||| || | || || || || ||||||||||| || || ||||| || ||||| ||||| Sbjct 5837945 ACCACCACGCAGGCGGAGCACCAAGTGCAGAGTGGACTCCTTCTGAATGTTATAGTCAGA 5837886 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 || | | || ||||| || || || ||||| ||||| || | || ||||||||||| Sbjct 5837885 GAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGG 5837826 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 |||||||| || || |||||||| ||||| |||||||| || ||||| ||||| || Sbjct 5837825 AATTCCTTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTATCCGACGGTTCGAC 5837766 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | ||| || |||||||| || | ||||| || || |||||||| Sbjct 5837765 CTCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCAT 5837718 >seq1554 Length=6179234 Score = 143 bits (158), Expect = 5e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | || |||||| || ||||| || || || || ||||| || || || || || Sbjct 592773 CCACCGCGCAGACGCAGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 592714 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | | ||||| || || || ||||| || ||||| | | || |||||||| || Sbjct 592713 AGAGTGCGTCCGTCCTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGG 592654 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||||||||| || || ||||| || || || || ||||| ||||| || || ||| Sbjct 592653 ATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTATCGGATGGCTCAACT 592594 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || || |||||||| |||| ||||| || || |||||||| Sbjct 592593 TCCAAGGTGATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCAT 592547 >seq1557 Length=14215200 Score = 102 bits (112), Expect = 2e-16 Identities = 155/218 (71%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 198331 ATGACCCTCTATGGAATGCATCGCAAATACAGATGATAAGAGAAGGAAAAATGCATAGTT 198390 ||||| || ||||| | ||||| | ||| || | | || ||||||||||| | | Sbjct 1364482 ATGACGACCTGTGGAACTCGGCGCAACTGCAGCTGGTGCGCGAGGGAAAAATGCACGGCT 1364541 Query 198391 TTTTAAGAATGTACTGGGCTAAAAAGATACTTGAATGGACAAGAACACCGGAAGACGCTT 198450 |||| | ||||||||||| |||||||| || ||||||||| |||||||| | || | Sbjct 1364542 TTTTGCGCATGTACTGGGCCAAAAAGATTCTGGAATGGACAGCGACACCGGAGCAGGCGT 1364601 Query 198451 TGAGTTATAGTATCTATCTAAACAATAAGTACGAACTAGACGGCACG-GATCCTAACGGA 198509 || || ||| || ||| | |||||| || || || ||| || || ||||| Sbjct 1364602 TGGAATACGCAATCCTACTGAACGACAAGTACAGTCTGGATGG-ACGCGACCCCAACGGC 1364660 Query 198510 TACGTAGGTTGTATGTGGTCTATTTGCGGATTACATGA 198547 || || ||||| |||||||| ||| |||| | ||||| Sbjct 1364661 TATGTCGGTTGCATGTGGTCCATTGGCGGCGTCCATGA 1364698 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981641889013809